mRNA_P-wetherbeei_contig10135.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10135.1.1
Unique NamemRNA_P-wetherbeei_contig10135.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10135.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10135contigP-wetherbeei_contig10135:99..245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1469557.JSWF01000028_gene2785
PFAMsDUF5011,FTP,Inhibitor_I69,MAM,Peptidase_C10,Peptidase_M14,Peptidase_M4,Peptidase_M43,Peptidase_M4_C,Reprolysin_4,fn3
Model size147
Max annot lvl976|Bacteroidetes
KEGG koko:K01400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000186
EggNOG OGsCOG2356@1|root,COG3227@1|root,COG3291@1|root,COG2356@2|Bacteria,COG3227@2|Bacteria,COG3291@2|Bacteria,4NF8H@976|Bacteroidetes,1IJ61@117743|Flavobacteriia
EC3.4.24.28
DescriptionThermolysin metallopeptidase, catalytic domain
Cds size129
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.4349804-CDS-P-wetherbeei_contig10135:98..2271683185856.4349804-CDS-P-wetherbeei_contig10135:98..227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10135 99..227 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.4433937-UTR-P-wetherbeei_contig10135:227..2451683185856.4433937-UTR-P-wetherbeei_contig10135:227..245Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10135 228..245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10135.1.1prot_P-wetherbeei_contig10135.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10135 99..227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10135.1.1

>prot_P-wetherbeei_contig10135.1.1 ID=prot_P-wetherbeei_contig10135.1.1|Name=mRNA_P-wetherbeei_contig10135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
MFSNTPCVSAGTDLKLCTDGVRNGNETDVDCGGGSCAVSARGR
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mRNA from alignment at P-wetherbeei_contig10135:99..245-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10135.1.1 ID=mRNA_P-wetherbeei_contig10135.1.1|Name=mRNA_P-wetherbeei_contig10135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig10135:99..245- (Phaeothamnion wetherbeei SAG_119_79)
GGCTATTCGGGAACGACCATGTTCTCCAACACGCCGTGCGTTAGCGCCGG
GACTGACCTGAAGCTCTGCACAGACGGCGTCCGGAATGGGAACGAGACCG
ACGTCGACTGCGGCGGCGGCTCCTGCGCGGTGAGCGCCAGAGGAAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10135:99..245-

>mRNA_P-wetherbeei_contig10135.1.1 ID=mRNA_P-wetherbeei_contig10135.1.1|Name=mRNA_P-wetherbeei_contig10135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig10135:99..245- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCTCCAACACGCCGTGCGTTAGCGCCGGGACTGACCTGAAGCTCTG
CACAGACGGCGTCCGGAATGGGAACGAGACCGACGTCGACTGCGGCGGCG
GCTCCTGCGCGGTGAGCGCCAGAGGAAGA
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