mRNA_P-wetherbeei_contig10134.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10134.1.1
Unique NamemRNA_P-wetherbeei_contig10134.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10134.1.1 vs. uniprot
Match: A0A7Z9PVL7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PVL7_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 3.230e-11
Identity = 40/134 (29.85%), Postives = 77/134 (57.46%), Query Frame = 1 
Query:   16 LNRAGLSLLEVMLAIALMGVVVVGILVVMGGGLRLMNQAGDVTRARELATQEMENIRQSAYAYSPDGTNFDARSGTAAVG--GYPPAPYNPAP--GETYKLAVAVQRVNPTLRSIRVDVYWGVNHNIHLETLMN 405
            ++  G+ LLE+++A+ ++ V ++G++     GL++MN++  ++ A E+    +E ++ + Y  +  GT +D   G  A G  G+PPAPY       + Y L V   +V+P +R + VDV+W     + L+TL++
Sbjct:    1 MSTKGVFLLEIIIALGVVVVAILGLMAAFTAGLKMMNESEKISAATEIGRSFVEQVKTTGYDKTTVGT-YDGWIGEPADGTTGFPPAPYPQVKKQDQDYWLEVECAQVSPVVRMLSVDVHWDSQGKVTLKTLIH 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10134.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Z9PVL7_9BACT3.230e-1129.85Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10134contigP-wetherbeei_contig10134:805..1215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size411
Hectar predicted targeting categorysignal anchor
Exons1
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.3685095-CDS-P-wetherbeei_contig10134:804..12121683185856.3685095-CDS-P-wetherbeei_contig10134:804..1212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10134 805..1212 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.3780317-UTR-P-wetherbeei_contig10134:1212..12151683185856.3780317-UTR-P-wetherbeei_contig10134:1212..1215Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10134 1213..1215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10134.1.1prot_P-wetherbeei_contig10134.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10134 805..1212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10134.1.1

>prot_P-wetherbeei_contig10134.1.1 ID=prot_P-wetherbeei_contig10134.1.1|Name=mRNA_P-wetherbeei_contig10134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MARSLNRAGLSLLEVMLAIALMGVVVVGILVVMGGGLRLMNQAGDVTRAR
ELATQEMENIRQSAYAYSPDGTNFDARSGTAAVGGYPPAPYNPAPGETYK
LAVAVQRVNPTLRSIRVDVYWGVNHNIHLETLMNP*
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mRNA from alignment at P-wetherbeei_contig10134:805..1215-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10134.1.1 ID=mRNA_P-wetherbeei_contig10134.1.1|Name=mRNA_P-wetherbeei_contig10134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig10134:805..1215- (Phaeothamnion wetherbeei SAG_119_79)
CACATGGCGCGTTCGCTAAACCGCGCAGGACTGAGCCTGCTGGAAGTCAT
GTTGGCCATCGCGTTGATGGGGGTCGTGGTCGTAGGAATCCTGGTCGTGA
TGGGCGGCGGGCTGCGTCTGATGAATCAGGCCGGTGATGTCACTCGGGCC
CGAGAGCTGGCCACCCAGGAGATGGAGAACATCCGCCAGTCGGCTTACGC
CTACTCTCCCGACGGCACCAACTTCGACGCCCGCAGCGGCACCGCCGCCG
TCGGGGGCTATCCCCCGGCGCCCTATAATCCGGCGCCCGGAGAGACTTAC
AAGCTGGCGGTGGCCGTGCAACGCGTCAATCCGACACTTCGCTCAATCCG
CGTCGACGTCTATTGGGGTGTGAACCATAACATCCACCTGGAAACCTTGA
TGAACCCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10134:805..1215-

>mRNA_P-wetherbeei_contig10134.1.1 ID=mRNA_P-wetherbeei_contig10134.1.1|Name=mRNA_P-wetherbeei_contig10134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig10134:805..1215- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGTTCGCTAAACCGCGCAGGACTGAGCCTGCTGGAAGTCATGTT
GGCCATCGCGTTGATGGGGGTCGTGGTCGTAGGAATCCTGGTCGTGATGG
GCGGCGGGCTGCGTCTGATGAATCAGGCCGGTGATGTCACTCGGGCCCGA
GAGCTGGCCACCCAGGAGATGGAGAACATCCGCCAGTCGGCTTACGCCTA
CTCTCCCGACGGCACCAACTTCGACGCCCGCAGCGGCACCGCCGCCGTCG
GGGGCTATCCCCCGGCGCCCTATAATCCGGCGCCCGGAGAGACTTACAAG
CTGGCGGTGGCCGTGCAACGCGTCAATCCGACACTTCGCTCAATCCGCGT
CGACGTCTATTGGGGTGTGAACCATAACATCCACCTGGAAACCTTGATGA
ACCCGTGA
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