mRNA_P-wetherbeei_contig10131.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10131.1.1
Unique NamemRNA_P-wetherbeei_contig10131.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: A0A3C0TX88_9PROT (MFS transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TX88_9PROT)

HSP 1 Score: 168 bits (425), Expect = 1.420e-48
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FSLGMLALGMGNG+VFQLIPQRFR EIG MTGLVGFAGG GGYFLAK+LG AKG+TG+FSSGF+VFG+LALIGL AL +VKRRWRTTWGAVSGARI
Sbjct:  328 FSLGMLALGMGNGAVFQLIPQRFRQEIGVMTGLVGFAGGVGGYFLAKTLGAAKGLTGEFSSGFLVFGLLALIGLTALFQVKRRWRTTWGAVSGARI 423
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: A0A212Q7H6_RHOAC (Uncharacterized protein n=2 Tax=Rhodoblastus acidophilus TaxID=1074 RepID=A0A212Q7H6_RHOAC)

HSP 1 Score: 146 bits (369), Expect = 7.540e-44
Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FS+G L LGMGNG+VFQL+PQRFRNE+G MTGLVGFAGG GG+FLAK+L  +KGMTG F +GF+ F VLAL+G+  L+ VK RWRTTWGAVSGARI
Sbjct:    9 FSVGTLCLGMGNGAVFQLLPQRFRNEVGVMTGLVGFAGGLGGFFLAKALATSKGMTGGFMAGFLFFSVLALLGVAGLTFVKTRWRTTWGAVSGARI 104
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: A0A1W6MXL3_9HYPH (MFS transporter n=1 Tax=Methylocystis bryophila TaxID=655015 RepID=A0A1W6MXL3_9HYPH)

HSP 1 Score: 147 bits (372), Expect = 9.000e-41
Identity = 75/96 (78.12%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FSLG+L LGMGNGSVFQL+PQRFRNEIGAMTGLVG AGG GGYFLAK+L  +KG TG F  GF  FGVLAL+GL  L  VK RWRTTWGAVSGARI
Sbjct:  324 FSLGVLCLGMGNGSVFQLLPQRFRNEIGAMTGLVGAAGGFGGYFLAKTLAFSKGATGGFLMGFSFFGVLALLGLLGLLLVKSRWRTTWGAVSGARI 419
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: A0A508T7L1_9BRAD (Nitrate transporter n=58 Tax=cellular organisms TaxID=131567 RepID=A0A508T7L1_9BRAD)

HSP 1 Score: 147 bits (370), Expect = 1.770e-40
Identity = 71/96 (73.96%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FS+G+LALGMGNG+VFQLIP RFR+EIG MTGLVG AGG GG+FLA++LG AKGMTG F +GF+ FGVLAL+G   L+ VK RWRTTWGAVSGAR+
Sbjct:  324 FSIGVLALGMGNGAVFQLIPLRFRHEIGLMTGLVGCAGGIGGFFLAQTLGTAKGMTGGFGAGFLFFGVLALLGFIGLAMVKVRWRTTWGAVSGARV 419
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: UPI001FAA2FC9 (MFS transporter n=1 Tax=Rhodoblastus acidophilus TaxID=1074 RepID=UPI001FAA2FC9)

HSP 1 Score: 146 bits (369), Expect = 2.440e-40
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FS G L LGMGNG+VFQL+PQRFRNE+G MTGLVGFAGG GG+FLAK+L  +KGMTG F +GF+ FG LAL+G+  L+ VK RWRTTWGAVSGARI
Sbjct:  323 FSTGALCLGMGNGAVFQLLPQRFRNEVGVMTGLVGFAGGIGGFFLAKALATSKGMTGGFMAGFLFFGCLALLGVAGLTFVKHRWRTTWGAVSGARI 418
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: UPI001C009A25 (MFS transporter n=1 Tax=Bradyrhizobium sp. S2-11-2 TaxID=2840472 RepID=UPI001C009A25)

HSP 1 Score: 146 bits (369), Expect = 2.490e-40
Identity = 71/96 (73.96%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FS+G+LALGMGNG+VFQLIP RFR+EIG MTGLVG AGG GG+FLA++LGVAKGMTG F +GF+ FG LAL+G   L+ VK RWRTTWGAVSGAR+
Sbjct:  324 FSIGVLALGMGNGAVFQLIPLRFRHEIGLMTGLVGCAGGVGGFFLAQALGVAKGMTGGFGAGFLFFGFLALLGFVGLAMVKVRWRTTWGAVSGARV 419
[Close]
BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: A0A1B1UMW7_9BRAD (MFS transporter n=17 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1UMW7_9BRAD)

HSP 1 Score: 146 bits (368), Expect = 3.490e-40
Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FS+G+LALGMGNG+VFQLIP RFR EIG MTG+VG AGG GG+FLAK+LGVAKGMTG F +GF+ FG+LAL+G   L+ VK RWRTTWGA SGAR+
Sbjct:  324 FSIGVLALGMGNGAVFQLIPLRFRQEIGLMTGMVGCAGGIGGFFLAKALGVAKGMTGGFGAGFLFFGLLALLGFLGLAMVKVRWRTTWGAASGARV 419
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: A0A6B8KL41_9HYPH (MFS transporter n=1 Tax=Methylocystis heyeri TaxID=391905 RepID=A0A6B8KL41_9HYPH)

HSP 1 Score: 146 bits (368), Expect = 3.490e-40
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FS+GML+LGMGNG+VFQL+PQRFR EIGAMTGLVG AGG GG+FLAK+L  +KG TG F +GF  FGVLA++GLF L  VK RWRTTWGAVSGARI
Sbjct:  324 FSIGMLSLGMGNGAVFQLLPQRFRGEIGAMTGLVGAAGGLGGFFLAKTLAFSKGETGGFFAGFSFFGVLAILGLFGLLLVKSRWRTTWGAVSGARI 419
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: UPI001922FFA6 (MFS transporter n=1 Tax=Methylocystis sp. Sn-Cys TaxID=1701263 RepID=UPI001922FFA6)

HSP 1 Score: 145 bits (366), Expect = 6.990e-40
Identity = 71/96 (73.96%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FS+G+L LGMGNG+VFQL+PQRFR EIGAMTGLVG AGG GG+FLAK+L  +KG TG FS GF+ FG+LAL+GL  L  VK RWRTTWGAVSGARI
Sbjct:  325 FSIGVLCLGMGNGAVFQLLPQRFRREIGAMTGLVGAAGGLGGFFLAKTLAFSKGATGGFSGGFVFFGLLALLGLIGLFIVKTRWRTTWGAVSGARI 420
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BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Match: A0A431PP01_9HYPH (NarK/NasA family nitrate transporter n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A431PP01_9HYPH)

HSP 1 Score: 144 bits (364), Expect = 1.330e-39
Identity = 71/96 (73.96%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 FSLGMLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKGMTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI 288
            FS+G+L LGMGNG+VFQL+PQRFR EIGAMTGLVG AGG GG+FLAKSL  +KG TG F++GF+ F VLAL+GL  L  VK RWRTTWGAVSGARI
Sbjct:  323 FSIGVLCLGMGNGAVFQLLPQRFRKEIGAMTGLVGAAGGAGGFFLAKSLAYSKGATGGFTAGFLFFAVLALLGLLGLVFVKTRWRTTWGAVSGARI 418
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TX88_9PROT1.420e-4886.46MFS transporter n=1 Tax=Alphaproteobacteria bacter... [more]
A0A212Q7H6_RHOAC7.540e-4472.92Uncharacterized protein n=2 Tax=Rhodoblastus acido... [more]
A0A1W6MXL3_9HYPH9.000e-4178.13MFS transporter n=1 Tax=Methylocystis bryophila Ta... [more]
A0A508T7L1_9BRAD1.770e-4073.96Nitrate transporter n=58 Tax=cellular organisms Ta... [more]
UPI001FAA2FC92.440e-4072.92MFS transporter n=1 Tax=Rhodoblastus acidophilus T... [more]
UPI001C009A252.490e-4073.96MFS transporter n=1 Tax=Bradyrhizobium sp. S2-11-2... [more]
A0A1B1UMW7_9BRAD3.490e-4072.92MFS transporter n=17 Tax=Bradyrhizobium TaxID=374 ... [more]
A0A6B8KL41_9HYPH3.490e-4075.00MFS transporter n=1 Tax=Methylocystis heyeri TaxID... [more]
UPI001922FFA66.990e-4073.96MFS transporter n=1 Tax=Methylocystis sp. Sn-Cys T... [more]
A0A431PP01_9HYPH1.330e-3973.96NarK/NasA family nitrate transporter n=1 Tax=Hypho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10131contigP-wetherbeei_contig10131:2..292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000013_gene6520
Preferred namenarK
PFAMsMFS_1
Model size291
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02575
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.14e-38
EggNOG OGsCOG2223@1|root,COG2223@2|Bacteria,1MU27@1224|Proteobacteria,2TSXZ@28211|Alphaproteobacteria,3JUV6@41294|Bradyrhizobiaceae
DescriptionMajor Facilitator Superfamily
Cds size279
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.2352753-UTR-P-wetherbeei_contig10131:1..131683185856.2352753-UTR-P-wetherbeei_contig10131:1..13Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10131 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.2437854-CDS-P-wetherbeei_contig10131:13..2921683185856.2437854-CDS-P-wetherbeei_contig10131:13..292Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10131 14..292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10131.1.1prot_P-wetherbeei_contig10131.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10131 14..292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10131.1.1

>prot_P-wetherbeei_contig10131.1.1 ID=prot_P-wetherbeei_contig10131.1.1|Name=mRNA_P-wetherbeei_contig10131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MLALGMGNGSVFQLIPQRFRNEIGAMTGLVGFAGGTGGYFLAKSLGVAKG
MTGDFSSGFIVFGVLALIGLFALSRVKRRWRTTWGAVSGARI*
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mRNA from alignment at P-wetherbeei_contig10131:2..292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10131.1.1 ID=mRNA_P-wetherbeei_contig10131.1.1|Name=mRNA_P-wetherbeei_contig10131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig10131:2..292+ (Phaeothamnion wetherbeei SAG_119_79)
TTTTCTCTTGGGATGCTGGCGCTGGGCATGGGCAATGGTTCGGTGTTTCA
GCTTATTCCGCAACGCTTCCGCAATGAAATTGGCGCCATGACCGGGCTGG
TTGGGTTTGCGGGCGGAACCGGCGGTTACTTTCTTGCCAAATCATTGGGT
GTGGCGAAGGGCATGACGGGTGATTTTTCTTCCGGGTTTATTGTATTTGG
CGTGCTGGCCCTGATCGGACTGTTTGCGCTTTCGCGTGTGAAGCGCCGCT
GGCGCACCACCTGGGGCGCGGTGTCGGGGGCGCGCATATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10131:2..292+

>mRNA_P-wetherbeei_contig10131.1.1 ID=mRNA_P-wetherbeei_contig10131.1.1|Name=mRNA_P-wetherbeei_contig10131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig10131:2..292+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCGCTGGGCATGGGCAATGGTTCGGTGTTTCAGCTTATTCCGCA
ACGCTTCCGCAATGAAATTGGCGCCATGACCGGGCTGGTTGGGTTTGCGG
GCGGAACCGGCGGTTACTTTCTTGCCAAATCATTGGGTGTGGCGAAGGGC
ATGACGGGTGATTTTTCTTCCGGGTTTATTGTATTTGGCGTGCTGGCCCT
GATCGGACTGTTTGCGCTTTCGCGTGTGAAGCGCCGCTGGCGCACCACCT
GGGGCGCGGTGTCGGGGGCGCGCATATGA
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