mRNA_P-wetherbeei_contig1013.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1013.9.1
Unique NamemRNA_P-wetherbeei_contig1013.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1013.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1013contigP-wetherbeei_contig1013:4949..5508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size560
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.9739172-UTR-P-wetherbeei_contig1013:4948..51841683185855.9739172-UTR-P-wetherbeei_contig1013:4948..5184Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1013 4949..5184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.9826128-CDS-P-wetherbeei_contig1013:5184..55081683185855.9826128-CDS-P-wetherbeei_contig1013:5184..5508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1013 5185..5508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1013.9.1prot_P-wetherbeei_contig1013.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1013 5185..5508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1013.9.1

>prot_P-wetherbeei_contig1013.9.1 ID=prot_P-wetherbeei_contig1013.9.1|Name=mRNA_P-wetherbeei_contig1013.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
PGPQVLLQNGVVFPFKLPGVRLGVVRFVVGLVLRNENEPPMLWVTKFLPL
VRNARLQPSRLLRDGPFERKNRKVHLVLRDFNAFLLICGDQLGNLQRRQP
EADSSGD*
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mRNA from alignment at P-wetherbeei_contig1013:4949..5508-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1013.9.1 ID=mRNA_P-wetherbeei_contig1013.9.1|Name=mRNA_P-wetherbeei_contig1013.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=560bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:4949..5508- (Phaeothamnion wetherbeei SAG_119_79)
CCCGGCCCCCAAGTCCTTCTTCAGAATGGTGTGGTTTTCCCCTTTAAGCT
TCCAGGCGTGCGACTGGGAGTCGTTCGATTTGTAGTTGGACTCGTCTTGC
GAAATGAAAACGAGCCGCCGATGCTGTGGGTTACCAAATTCCTTCCGCTT
GTTCGTAACGCACGCTTGCAACCATCCCGGCTGCTCCGCGACGGTCCGTT
CGAACGAAAAAACAGAAAGGTACACCTTGTCCTCCGGGACTTTAACGCCT
TCCTTCTCATCTGTGGCGATCAACTCGGCAATCTGCAGCGGCGTCAACCC
GAGGCTGATAGCTCGGGTGATTGATATTTCGTACCACAACTCTGCGTACT
CTCCATAGTTCCGAATCGCAGGCAGGTATTCCTGCATTGTTTCGAGGGGG
CGCAAGGGGCGGCCGGCGGGCCGAAGACGGCGAGTTGCGGTTCAGCTCCT
TTTGTTGAGGACATCTACTGATGCCGCATTCATGGGGTGGCAGCGTTCAG
AGGAAACTTAAAAATCGGCAGCGGTGGCCGCGGCGGTCCTCCTTTGTCAG
CGGCGGCACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1013:4949..5508-

>mRNA_P-wetherbeei_contig1013.9.1 ID=mRNA_P-wetherbeei_contig1013.9.1|Name=mRNA_P-wetherbeei_contig1013.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:4949..5508- (Phaeothamnion wetherbeei SAG_119_79)
CCCGGCCCCCAAGTCCTTCTTCAGAATGGTGTGGTTTTCCCCTTTAAGCT
TCCAGGCGTGCGACTGGGAGTCGTTCGATTTGTAGTTGGACTCGTCTTGC
GAAATGAAAACGAGCCGCCGATGCTGTGGGTTACCAAATTCCTTCCGCTT
GTTCGTAACGCACGCTTGCAACCATCCCGGCTGCTCCGCGACGGTCCGTT
CGAACGAAAAAACAGAAAGGTACACCTTGTCCTCCGGGACTTTAACGCCT
TCCTTCTCATCTGTGGCGATCAACTCGGCAATCTGCAGCGGCGTCAACCC
GAGGCTGATAGCTCGGGTGATTGA
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