mRNA_P-wetherbeei_contig1013.8.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1013.8.4
Unique NamemRNA_P-wetherbeei_contig1013.8.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5K757_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K757_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.100e-21
Identity = 55/148 (37.16%), Postives = 74/148 (50.00%), Query Frame = 2
Query:  266 ILKKDLGAGVMVSGA-----QFIGLKPDEMEAGGVLFFSSAIVRAVETRXXXXXXXGGARFRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            + KK  G G+MVSG       F    P +++             A   R          ++R +D L   E G  WS+HLFEYGKN+EGYWTG KM   + D++D     +P+   VC FDW+S HDC+   AP  S +NVG G+  N
Sbjct:  613 VTKKSPGQGIMVSGTIIHNVGFFSASPAQIDQANRNRKMRCRESAAAARRGENVKE--EKYRAIDMLHVDEDGNSWSYHLFEYGKNKEGYWTGLKMLDHMNDVLDMVGVLYPEYKPVCLFDWTSCHDCLEVGAPRVSGMNVGFGQMRN 758          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5KYI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.370e-21
Identity = 63/162 (38.89%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  248 GQGVPFILKKDLGAGVMVSGAQFIGLKPDEMEAGGVLFFSSA---IVRAVETRXXXXXXXGGAR----------FRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            GQ VP  +KK  G G+MVSG               V FFS++   I  A   R         A+          FR +D L   E G+ WS+HLFEYGKN+EGYWTG +M   + D++D  +  +P+   V  FDWSS HDCM   APS   +N+G+G   N
Sbjct:  132 GQHVP--VKKSQGQGIMVSGTII----------HNVGFFSASRAQIQDAERNRRKRCAATAAAKRRGENVKVEKFRPIDMLHEDEHGQYWSYHLFEYGKNKEGYWTGLRMLDHMSDVLDMFTVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRN 281          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5JX52_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX52_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.710e-21
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 2
Query:  257 VPFILKKDLGAGVMVSGA-----QFIGLKPDEMEAGGVLFFSSAIVRAVETRXXXXXXXGGARFRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRK 688
            V  + KK  G G+MVSG       F+     E+++   L        A   +           +R++D L+  E+G  WS+HLFEYGKN+EGYWTG KM   + D++D  + ++P+   V  FDWSS HDC+   AP+   +NVG G K
Sbjct:  563 VHVVRKKSPGQGIMVSGTIIHNVGFVSATKREIKSAEQLRRKRCNASAAAAKRGENVKV--EVYRRIDKLYVDEEGNYWSYHLFEYGKNKEGYWTGLKMLDHMSDVIDMLAIKYPNHKPVGLFDWSSCHDCLEEGAPTVKRMNVGHGGK 709          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5JWN3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.790e-21
Identity = 60/160 (37.50%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  248 GQGVPFILKKDLGAGVMVSGAQFIGLKPDEMEAGGVLFFSSAIVRAVETRXXXXXXXGGA-----------RFRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            GQ VP  +KK  G G+MVSG     +        G    S A ++  E           A           +FR +D L   E G+ WS+HLFEYGKN+EGYWTG +M   + D++D  +  +P+   V  FDWSS HDCM   APS   +N+G+G   N
Sbjct:  131 GQHVP--VKKSQGQGIMVSGTIIHNV--------GFFSASRAQIQDAERNRRKRCAASAAAKRRGENVKVEKFRPIDMLHEDEHGQYWSYHLFEYGKNKEGYWTGLRMLDHMSDVLDMFTVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRN 280          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5KQK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.540e-21
Identity = 63/162 (38.89%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  248 GQGVPFILKKDLGAGVMVSGAQFIGLKPDEMEAGGVLFFSSA---IVRAVETRXXXXXXXGGAR----------FRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            GQ VP  +KK  G G+MVSG               V FFS++   I  A   R         A+          FR +D L   E G+ WS+HLFEYGKN+EGYWTG +M   + D++D  +  +P+   V  FDWSS HDCM   APS   +N+G+G   N
Sbjct:  278 GQHVP--VKKSQGQGIMVSGTII----------HNVGFFSASRAQIQEAERNRRKRCAASAAAKRRGENVKVEKFRPIDMLHEDEHGQYWSYHLFEYGKNKEGYWTGLRMLDHMSDVLDMFTVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRN 427          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5JCT5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 9.490e-21
Identity = 60/160 (37.50%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  248 GQGVPFILKKDLGAGVMVSGAQFIGLKPDEMEAGGVLFFSSAIVRAVETRXXXXXXXGGA-----------RFRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            GQ VP  +KK  G G+MVSG     +        G    S A ++  E           A           +FR +D L   E G+ WS+HLFEYGKN+EGYWTG +M   + D++D  +  +P+   V  FDWSS HDCM   APS   +N+G+G   N
Sbjct:  177 GQHVP--VKKSQGQGIMVSGTIIHNV--------GFFSASRAQIQDAERNRRKRCAASAAAKRRGENVKVEKFRPIDMLHEDEHGQYWSYHLFEYGKNKEGYWTGLRMLDHMSDVLDMFTVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRN 326          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5KNP2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.180e-20
Identity = 60/160 (37.50%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  248 GQGVPFILKKDLGAGVMVSGAQFIGLKPDEMEAGGVLFFSSAIVRAVETRXXXXXXXGGA-----------RFRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            GQ VP  +KK  G G+MVSG     +        G    S A ++  E           A           +FR +D L   E G+ WS+HLFEYGKN+EGYWTG +M   + D++D  +  +P+   V  FDWSS HDCM   APS   +N+G+G   N
Sbjct:  418 GQHVP--VKKSQGQGIMVSGTIIHNV--------GFFSASRAQIQDAERNRRKRCAASAAAKRRGENVKVEKFRPIDMLHEDEHGQYWSYHLFEYGKNKEGYWTGLRMLDHMSDVLDMFTVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRN 567          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5K0T7_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.260e-20
Identity = 60/160 (37.50%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  248 GQGVPFILKKDLGAGVMVSGAQFIGLKPDEMEAGGVLFFSSAIVRAVETRXXXXXXXGGA-----------RFRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            GQ VP  +KK  G G+MVSG     +        G    S A ++  E           A           +FR +D L   E G+ WS+HLFEYGKN+EGYWTG +M   + D++D  +  +P+   V  FDWSS HDCM   APS   +N+G+G   N
Sbjct:  565 GQHVP--VKKSQGQGIMVSGTIIHNV--------GFFSASRAQIQDAERNRRKRCAASAAAKRRGENVKVEKFRPIDMLHEDEHGQYWSYHLFEYGKNKEGYWTGLRMLDHMSDVLDMFTVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRN 714          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5JKY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.540e-20
Identity = 59/160 (36.88%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  248 GQGVPFILKKDLGAGVMVSGAQFIGLKPDEMEAGGVLFFSSAIVRAVETRXXXXXXXGGA-----------RFRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            GQ VP  +KK  G G+MVSG     +        G    S A ++  E           A           +FR +D L   E G+ WS+HLFEYGKN+EGYWTG +M   + D++D  +  +P+   V  FDW S HDCM   APS   +N+G+G   N
Sbjct:  265 GQHVP--VKKSQGQGIMVSGTIIHNV--------GFFSASRAQIQDAERNRRKRCAASAAAKRRGENVKVEKFRPIDMLHEDEHGQYWSYHLFEYGKNKEGYWTGLRMLDHMSDVLDMFTVLYPEHKPVGLFDWPSCHDCMEVGAPSVKRINLGVGGVRN 414          
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Match: A0A6H5KX84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX84_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.760e-20
Identity = 63/162 (38.89%), Postives = 81/162 (50.00%), Query Frame = 2
Query:  248 GQGVPFILKKDLGAGVMVSGAQFIGLKPDEMEAGGVLFFSSA---IVRAVETRXXXXXXXGGAR----------FRKVDHLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCLFVCKFDWSSNHDCMPPTAPSASALNVGIGRKNN 694
            GQ VP  +KK  G G+MVSG     L           FFS++   I  A   R         A+          FR +D L   E G  WS+HLFEYGKN+EGYWTG KM   + D++D ++  +P+   V  FDWSS HDCM   A S   +N+G+G   N
Sbjct:  289 GQHVP--VKKSQGQGIMVSGTIIHNLG----------FFSASREQIKEAERNRRKRCTASVAAKRPGENVKVEKFRPIDMLHKDEHGRYWSYHLFEYGKNKEGYWTGLKMLDHMADVLDVSTVLYPEHKPVGLFDWSSWHDCMEAVAQSVKRINLGVGGVRN 438          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1013.8.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K757_9PHAE1.100e-2137.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYI9_9PHAE3.370e-2138.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX52_9PHAE3.710e-2136.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWN3_9PHAE3.790e-2137.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQK7_9PHAE8.540e-2138.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCT5_9PHAE9.490e-2137.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNP2_9PHAE1.180e-2037.50Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T7_9PHAE1.260e-2037.50Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKY4_9PHAE2.540e-2036.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX84_9PHAE2.760e-2038.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1013contigP-wetherbeei_contig1013:4780..5919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0S7H9
Model size704
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.43e-05
EggNOG OGs2D06V@1|root,2SD1E@2759|Eukaryota
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.1071773-UTR-P-wetherbeei_contig1013:4779..48771683185856.1071773-UTR-P-wetherbeei_contig1013:4779..4877Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1013 4780..4877 +
1683185856.1205232-UTR-P-wetherbeei_contig1013:5127..52931683185856.1205232-UTR-P-wetherbeei_contig1013:5127..5293Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1013 5128..5293 +
1683185856.1322792-UTR-P-wetherbeei_contig1013:5480..55111683185856.1322792-UTR-P-wetherbeei_contig1013:5480..5511Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1013 5481..5511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.1441386-CDS-P-wetherbeei_contig1013:5511..59191683185856.1441386-CDS-P-wetherbeei_contig1013:5511..5919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1013 5512..5919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1013.8.4prot_P-wetherbeei_contig1013.8.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1013 5512..5919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1013.8.4

>prot_P-wetherbeei_contig1013.8.4 ID=prot_P-wetherbeei_contig1013.8.4|Name=mRNA_P-wetherbeei_contig1013.8.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MVSGAQFIGLKPDEMEAGGVLFFSSAIVRAVETRRRSSAAAGGARFRKVD
HLWYGEKGECWSFHLFEYGKNREGYWTGEKMKYFVEDMVDCASERFPDCL
FVCKFDWSSNHDCMPPTAPSASALNVGIGRKNNIKA
back to top

mRNA from alignment at P-wetherbeei_contig1013:4780..5919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1013.8.4 ID=mRNA_P-wetherbeei_contig1013.8.4|Name=mRNA_P-wetherbeei_contig1013.8.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1140bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:4780..5919+ (Phaeothamnion wetherbeei SAG_119_79)
TATGGATGCACAAGCTCGGGGCCGGATTTGTCACTAAGCGAAAAGGCGTG TACGTAGACGGGCACGACCGGGATGACGTTCTGAAGTACCGCGACGAGGT GAAACTCATGCTGCGGCCATGATAAGAAACGTTTGCTTGAAGAAAAGCAT AGTCTTTTTAAATTCTGTTTGTGCCGCCGCTGACAAAGGAGGACCGCCGC GGCCACCGCTGCCGATTTTTAAGTTTCCTCTGAACGCTGCCACCCCATGA ATGCGGCATCAGTAGATGTCCTCAACAAAAGGAGCTGAACCGCAACTCGC CGTCTTCGGCCCGCCGGCCGCCCCTTGCGCCCCCTCGAAACAATGCAGGA ATACCTGCCTGCGATTCGGAACTATGGAGAGTACGCAGAGTTGTGGTACG AAATATCAATCACCCGAGCTATCAGCCTCGGGTTGACGCCGCTGCAGATT GCCGAGTTGATCGCCACAGATGAGAAGGAAGGCGTTAAAGTCCCGGAGGA CAAGGTGTACCTTTCTGTTTTTTCGTTCGAACGGACCGTCGCGGAGCAGC CGGGATGGTTGCAAGCGTGCGTTACGAACAAGCGGAAGGAATTTGGTAAC CCACAGCATCGGCGGCTCGTTTTCATTTCGCAAGACGAGTCCAACTACAA ATCGAACGACTCCCAGTCGCACGCCTGGAAGCTTAAAGGGGAAAACCACA CCATTCTGAAGAAGGACTTGGGGGCCGGGGTGATGGTTTCGGGAGCGCAG TTCATCGGGCTCAAACCGGACGAGATGGAGGCAGGGGGGGTTCTCTTCTT CTCATCTGCCATTGTCCGGGCGGTGGAGACCCGCCGGCGCAGCTCCGCGG CGGCGGGAGGCGCCAGATTTCGCAAGGTCGACCACTTGTGGTACGGCGAG AAGGGCGAGTGCTGGTCTTTTCATCTGTTTGAGTACGGCAAGAATCGAGA GGGATATTGGACCGGTGAAAAGATGAAATACTTCGTCGAAGATATGGTCG ATTGCGCGTCAGAACGCTTCCCCGACTGCCTGTTTGTCTGCAAGTTCGAC TGGAGCTCTAACCACGATTGTATGCCGCCCACTGCGCCGTCAGCGTCGGC ACTCAACGTCGGCATCGGCCGCAAGAACAATATCAAAGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1013:4780..5919+

>mRNA_P-wetherbeei_contig1013.8.4 ID=mRNA_P-wetherbeei_contig1013.8.4|Name=mRNA_P-wetherbeei_contig1013.8.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:4780..5919+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTTCGGGAGCGCAGTTCATCGGGCTCAAACCGGACGAGATGGAGGC
AGGGGGGGTTCTCTTCTTCTCATCTGCCATTGTCCGGGCGGTGGAGACCC
GCCGGCGCAGCTCCGCGGCGGCGGGAGGCGCCAGATTTCGCAAGGTCGAC
CACTTGTGGTACGGCGAGAAGGGCGAGTGCTGGTCTTTTCATCTGTTTGA
GTACGGCAAGAATCGAGAGGGATATTGGACCGGTGAAAAGATGAAATACT
TCGTCGAAGATATGGTCGATTGCGCGTCAGAACGCTTCCCCGACTGCCTG
TTTGTCTGCAAGTTCGACTGGAGCTCTAACCACGATTGTATGCCGCCCAC
TGCGCCGTCAGCGTCGGCACTCAACGTCGGCATCGGCCGCAAGAACAATA
TCAAAGCC
back to top