mRNA_P-wetherbeei_contig1013.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1013.6.1
Unique NamemRNA_P-wetherbeei_contig1013.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1013.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1013contigP-wetherbeei_contig1013:3367..4276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size717
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.9196184-UTR-P-wetherbeei_contig1013:3366..33871683185855.9196184-UTR-P-wetherbeei_contig1013:3366..3387Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1013 3367..3387 +
1683185855.9374998-UTR-P-wetherbeei_contig1013:3756..39341683185855.9374998-UTR-P-wetherbeei_contig1013:3756..3934Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1013 3757..3934 +
1683185855.9459867-UTR-P-wetherbeei_contig1013:4127..42761683185855.9459867-UTR-P-wetherbeei_contig1013:4127..4276Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1013 4128..4276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.9287608-CDS-P-wetherbeei_contig1013:3387..37561683185855.9287608-CDS-P-wetherbeei_contig1013:3387..3756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1013 3388..3756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1013.6.1prot_P-wetherbeei_contig1013.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1013 3388..3756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1013.6.1

>prot_P-wetherbeei_contig1013.6.1 ID=prot_P-wetherbeei_contig1013.6.1|Name=mRNA_P-wetherbeei_contig1013.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MRTVIPTKSKRAHDLERRFLIDRCTKEAWENVAFGREEAQNQQDERRAEG
KKVREAVRALLCFGFSKFPVGYCAASPCLAGCAPRTELPPNSYHECRATP
RRLLRRGLRRLRGRRRNVLLTR*
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mRNA from alignment at P-wetherbeei_contig1013:3367..4276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1013.6.1 ID=mRNA_P-wetherbeei_contig1013.6.1|Name=mRNA_P-wetherbeei_contig1013.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=910bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:3367..4276+ (Phaeothamnion wetherbeei SAG_119_79)
GACGTCCGCAAGCCTGTGGAAATGAGAACGGTGATACCCACGAAGAGCAA
GCGGGCGCACGACTTGGAGCGCCGCTTCCTCATTGACCGCTGTACAAAAG
AGGCTTGGGAGAACGTCGCTTTTGGGCGAGAGGAAGCCCAGAATCAACAG
GATGAGCGGCGTGCGGAAGGCAAGAAGGTGAGAGAAGCTGTTAGGGCGCT
TCTTTGTTTTGGCTTTTCCAAATTCCCGGTAGGATATTGTGCTGCCTCCC
CTTGCTTGGCTGGCTGCGCGCCAAGAACTGAACTTCCGCCCAACTCCTAC
CATGAATGCAGAGCGACCCCACGGCGGTTGCTGCGCCGCGGTCTCAGGAG
GCTCCGCGGCAGGCGAAGAAACGTGCTGCTGACGCGCTGACTGCCGTGAT
GGCCGCCCGGGATACCCATGTAACTAGCAACTGGGGTGGGGTGCGTGCTG
GCCAAGGACGCCCAGTCGACGCCTTCGGAGCGGCGCGGATGAAACATGTC
CGCCACGCACTGAAACAGGCACAGACAACGGACGACGAGCGCGCCGTGCG
TGAGTTGCTGCAACAGCTGTGCGATGATCTCGGCTTTGGCGGCAACACGA
TGGACCGCCTCAACGGCTGTATCGATCGCTCAAACCGGGACGCCAGCTGG
TACCAGAAACGGTACAAGAAGGCGCGGGCGGAGCAACAGATGAAGCGGGA
CGCAAAGCGGGAGGCCGAGGCGGCAGAACGGACGGCTGCGTGCTTCCGGT
TCCGGGAGGAGGACGCCATTCCTCACTTCGAAGCCGTGATGGCGGCCGTC
AACTGCACGACGCACGATGCGCGCTTTCGGCGAGCGCGGCGCGAGGCCGC
TGCTGCATCTGGCGAGGGCGCCGCAGAGCCGGCGGGGGAGCAACCGAGCA
TTTTGGACCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1013:3367..4276+

>mRNA_P-wetherbeei_contig1013.6.1 ID=mRNA_P-wetherbeei_contig1013.6.1|Name=mRNA_P-wetherbeei_contig1013.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:3367..4276+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAACGGTGATACCCACGAAGAGCAAGCGGGCGCACGACTTGGAGCG
CCGCTTCCTCATTGACCGCTGTACAAAAGAGGCTTGGGAGAACGTCGCTT
TTGGGCGAGAGGAAGCCCAGAATCAACAGGATGAGCGGCGTGCGGAAGGC
AAGAAGGTGAGAGAAGCTGTTAGGGCGCTTCTTTGTTTTGGCTTTTCCAA
ATTCCCGGTAGGATATTGTGCTGCCTCCCCTTGCTTGGCTGGCTGCGCGC
CAAGAACTGAACTTCCGCCCAACTCCTACCATGAATGCAGAGCGACCCCA
CGGCGGTTGCTGCGCCGCGGTCTCAGGAGGCTCCGCGGCAGGCGAAGAAA
CGTGCTGCTGACGCGCTGA
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