mRNA_P-wetherbeei_contig1013.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1013.1.1
Unique NamemRNA_P-wetherbeei_contig1013.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1013.1.1 vs. uniprot
Match: A0A8J2WTH8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTH8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.520e-25
Identity = 80/194 (41.24%), Postives = 116/194 (59.79%), Query Frame = 1 
Query:  811 FLRELGVRRRLPNPMLVRFERDM-GLLDASGAGIGDDVGIALANVLPLLPAATALRLPDNRLSDAALAAFVAAASRMPALTELDLSRNRVGPVTTRGLSALLRGRNPPCGLRELAVRRAGVDDAACAELVAAVTRNTTLTSLDLSENSLGAAEAFHRLSSRGESSGEAIATMLLANDTLRRLDLSWNGLRSGSA 1389
            +LRE+  ++ LP P+L R  +D  G LD +GAG+GD +  +LA VL  L     L L DNRL+D +L   + A + +P LT LDLS  ++   + +    L    +P C L  L + RA VDD  CA+ +A++  N +LTSL LSEN +G AEA + +    E+ GEA+A+ML +N  +  LD+SWN +R  SA
Sbjct:  410 YLREILRKKALPYPVLCRRRKDKPGTLDLTGAGVGDVIVESLAQVLDGLHDVDTLLLADNRLTDLSLEPLLEAIASLPHLTSLDLSGAKMDASSAKLREYLA---SPSCALTSLVMSRADVDDWECADFMASLQSNASLTSLSLSENLIGDAEALNSVQPELETGGEALASMLRSNKHVTYLDVSWNKIRRDSA 600
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BLAST of mRNA_P-wetherbeei_contig1013.1.1 vs. uniprot
Match: A0A7S3LYN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYN7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.630e-17
Identity = 65/183 (35.52%), Postives = 96/183 (52.46%), Query Frame = 1 
Query:  844 PNPMLVRFERDMGLLDASGAGIGDDVGIALANVLPLLPAATALRLPDNRLSDAALAAFVAAASRMPALTELDLSRNRVGPVTTRGLSALLRGRNPPCGLRELAVRRAGVDDAACAELVAAVTRNTTLTSLDLSENSLGAAEAFHRLSSRGESSGEAIATML-LANDTLRRLDLSWNGLRSGSA 1389
            P   LV  +     L+    G+GD +G+ LA  +  LP   ++ + DN L+D  +   + AA  +P L EL+LS+N +GPV+ + L   L   +P C L  L +R A VDD  C   V A+  N +L  LDLS N +G+AE  + +     + GEA+A +L L    LR L + WN +R   A
Sbjct:   41 PRASLVLRKNMSKQLNLQHHGMGDQMGVLLAESIQGLPHIQSINIADNMLTDVGMGPIILAAVGIPGLLELNLSQNEIGPVSAKALFEYLI--SPTCPLERLILRNADVDDFECERFVEAIKNNKSLVELDLSNNKIGSAENLNTVMPDLVTGGEALAELLRLPQCNLRTLKVDWNMIRLDGA 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1013.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8J2WTH8_9STRA2.520e-2541.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3LYN7_9STRA1.630e-1735.52Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1013contigP-wetherbeei_contig1013:589..2812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5K1
PFAMsDUF4476,EF-hand_5,EF-hand_6,EF-hand_7,LRR_6
Model size1696
Max annot lvl2759|Eukaryota
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.03e-25
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size1695
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.0078917-CDS-P-wetherbeei_contig1013:588..8301683185856.0078917-CDS-P-wetherbeei_contig1013:588..830Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1013 589..830 -
1683185856.0175967-CDS-P-wetherbeei_contig1013:1147..13341683185856.0175967-CDS-P-wetherbeei_contig1013:1147..1334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1013 1148..1334 -
1683185856.0258224-CDS-P-wetherbeei_contig1013:1546..28121683185856.0258224-CDS-P-wetherbeei_contig1013:1546..2812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1013 1547..2812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1013.1.1prot_P-wetherbeei_contig1013.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1013 589..2812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1013.1.1

>prot_P-wetherbeei_contig1013.1.1 ID=prot_P-wetherbeei_contig1013.1.1|Name=mRNA_P-wetherbeei_contig1013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=565bp
MFPGPWDNPSSKKEPPRAVDVDGKPGTPRRPWTATSGTGHRWNPLQENAP
FSCKSAMRQRCAAQSPGRTSIFLGRRDLDSPTRARRRLEEARGRNGTRSG
AYRRKLSKLAPSSHEPVMSGLLLAFSEHQIAMVKFRKMHCSSAPSSTAPA
GTPTPANKSSALGDSRFQPAVGGEGENNHEHKLEEKWSDNSFGHSDNSVA
IAAGVSATDSEEVRRQQFFDDFHTVSRQRNKEEQSSPRPPARTAAAAAAA
VPVATTAAASGGADASATALFLRELGVRRRLPNPMLVRFERDMGLLDASG
AGIGDDVGIALANVLPLLPAATALRLPDNRLSDAALAAFVAAASRMPALT
ELDLSRNRVGPVTTRGLSALLRGRNPPCGLRELAVRRAGVDDAACAELVA
AVTRNTTLTSLDLSENSLGAAEAFHRLSSRGESSGEAIATMLLANDTLRR
LDLSWNGLRSGSAAALASSLAHNGGLEELNLSNNALGDYPCQVLALALCE
NRRLRRLDLSFTSLGPAAASVLAHALKANATLIWLCLDGNRIGRDGGEAL
VRAMRLSQRAMPPSP
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mRNA from alignment at P-wetherbeei_contig1013:589..2812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1013.1.1 ID=mRNA_P-wetherbeei_contig1013.1.1|Name=mRNA_P-wetherbeei_contig1013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2224bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:589..2812- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCCGGGGCCGTGGGACAACCCTTCTTCGAAGAAAGAGCCGCCCCG
AGCCGTGGACGTGGACGGAAAGCCTGGAACGCCCAGGCGGCCATGGACGG
CTACATCGGGTACTGGGCATCGCTGGAACCCTCTGCAGGAAAACGCGCCG
TTCTCTTGTAAGAGCGCTATGCGGCAGCGGTGCGCAGCGCAATCGCCGGG
AAGGACGTCGATATTCCTGGGTCGCAGGGACCTCGACTCGCCCACACGGG
CACGAAGACGACTCGAAGAGGCAAGAGGGAGGAACGGCACCAGAAGCGGT
GCATATAGAAGGAAACTATCAAAGCTCGCGCCATCATCTCACGAGCCGGT
CATGTCAGGCTTGCTGCTGGCCTTTTCGGAACATCAGATTGCAATGGTCA
AGTTCAGGAAAATGCACTGCTCTTCTGCCCCGTCATCAACGGCGCCAGCA
GGGACACCGACTCCAGCAAATAAGAGCAGTGCATTAGGTGATTCCCGTTT
TCAACCGGCAGTTGGCGGGGAAGGAGAAAATAATCACGAGCACAAGCTTG
AGGAAAAATGGAGCGACAACAGTTTCGGCCACAGCGACAATTCGGTTGCC
ATTGCCGCAGGTGTCAGTGCTACGGATTCGGAGGAGGTGCGACGGCAGCA
GTTCTTCGACGACTTTCACACCGTGTCGCGCCAAAGGAACAAAGAGGAGC
AGTCCTCACCCCGGCCACCGGCGAGGACGGCGGCGGCTGCGGCGGCGGCG
GTGCCTGTGGCCACGACAGCGGCGGCATCAGGTGGAGCGGATGCCAGCGC
CACAGCCCTCTTCCTGCGCGAGCTGGGCGTGCGGCGCCGCCTCCCGAATC
CGATGCTTGTGCGCTTCGAGCGGGACATGGGCCTTCTGGATGCCTCCGGC
GCCGGCATCGGCGACGACGTCGGCATCGCCCTCGCCAATGTCTTGCCGCT
GCTGCCGGCCGCCACTGCCCTCCGCCTGCCCGACAACCGCCTCAGTGACG
CCGCCCTTGCCGCCTTTGTCGCCGCGGCGTCCCGCATGCCGGCGCTGACA
GAGCTGGACCTCTCCCGGAACCGTGTCGGCCCCGTCACCACTCGCGGCCT
GTCCGCGCTGCTCCGGGGCCGGAACCCTCCGTGCGGGCTGCGGGAGCTGG
CGGTGCGGCGAGCGGGTGTCGATGATGCCGCCTGTGCCGAGCTAGTGGCG
GCCGTGACCCGCAACACAACACTGACTAGTCTCGATCTCAGTGAGAACAG
CCTCGGCGCTGCCGAGGTGATATGAAGGATGGATAGAAAGAACTGCGCTG
CAAACGGTAGCGTTTTGAATTACGGTTAGGATGGTTTTGTGGAGTGCCAT
TGTTGAACCCGAGAAGCCGATGTATCCTCATGCATGAGCTTCGAATCCCC
AACACATCTTCTCTCTCTCTCTCTTTCTCTTGCCGGCTGCCGACCCACGC
GCGCTGACGCGAAACGCAAACTCCTCAGGCCTTTCACAGGCTGTCGTCGC
GTGGCGAAAGCAGCGGTGAGGCCATCGCCACCATGCTGCTGGCCAATGAC
ACTCTGCGTCGCCTCGACCTGTCCTGGAACGGCCTCCGGAGCGGGAGCGC
CGCCGCTCTCGCCAGCAGCCTCGCCCACAACGGCGGGCTGGAGGAGCTCA
ACCTGTCCAACAACGGTGTGCCAGCGCGAAAGGGAAAATTTAGGGTGACG
ATAAGAATGTAAAAGACCTCTTCTTCCTCCCTTCTTCAGTGATCGTACAT
GATCGTACAAGAGCTGTTCCGGCGGTTACTTTCGGCGGTTTTTCGTCTGG
TGGCAGATTACGGCCGCGCAGATGCTGCCCGCTCTAAATCCGCGAGCCGC
TGCAGTGCCCCTTTCATATGTAAAATCGCTGCTTCCTGAGACACCACTCA
TAACCTACCAAAGCACCTCCTCCATTTTCTTCCACTCTCCCACCTTTCCA
CTTTAAACAACGAAAACGGCAACGAATGGCAGCGCTGGGCGATTACCCTT
GCCAGGTGCTGGCCCTGGCCCTCTGCGAGAACCGGCGGCTGCGGCGTCTC
GATCTGTCCTTCACGTCGCTGGGACCGGCGGCGGCGAGCGTCCTCGCCCA
CGCTCTAAAAGCCAACGCCACCCTCATCTGGCTCTGCCTAGACGGCAACC
GCATCGGCCGCGACGGCGGGGAGGCCCTCGTGCGGGCAATGCGCCTCTCG
CAGCGCGCCATGCCGCCGTCCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1013:589..2812-

>mRNA_P-wetherbeei_contig1013.1.1 ID=mRNA_P-wetherbeei_contig1013.1.1|Name=mRNA_P-wetherbeei_contig1013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1695bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:589..2812- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCCGGGGCCGTGGGACAACCCTTCTTCGAAGAAAGAGCCGCCCCG
AGCCGTGGACGTGGACGGAAAGCCTGGAACGCCCAGGCGGCCATGGACGG
CTACATCGGGTACTGGGCATCGCTGGAACCCTCTGCAGGAAAACGCGCCG
TTCTCTTGTAAGAGCGCTATGCGGCAGCGGTGCGCAGCGCAATCGCCGGG
AAGGACGTCGATATTCCTGGGTCGCAGGGACCTCGACTCGCCCACACGGG
CACGAAGACGACTCGAAGAGGCAAGAGGGAGGAACGGCACCAGAAGCGGT
GCATATAGAAGGAAACTATCAAAGCTCGCGCCATCATCTCACGAGCCGGT
CATGTCAGGCTTGCTGCTGGCCTTTTCGGAACATCAGATTGCAATGGTCA
AGTTCAGGAAAATGCACTGCTCTTCTGCCCCGTCATCAACGGCGCCAGCA
GGGACACCGACTCCAGCAAATAAGAGCAGTGCATTAGGTGATTCCCGTTT
TCAACCGGCAGTTGGCGGGGAAGGAGAAAATAATCACGAGCACAAGCTTG
AGGAAAAATGGAGCGACAACAGTTTCGGCCACAGCGACAATTCGGTTGCC
ATTGCCGCAGGTGTCAGTGCTACGGATTCGGAGGAGGTGCGACGGCAGCA
GTTCTTCGACGACTTTCACACCGTGTCGCGCCAAAGGAACAAAGAGGAGC
AGTCCTCACCCCGGCCACCGGCGAGGACGGCGGCGGCTGCGGCGGCGGCG
GTGCCTGTGGCCACGACAGCGGCGGCATCAGGTGGAGCGGATGCCAGCGC
CACAGCCCTCTTCCTGCGCGAGCTGGGCGTGCGGCGCCGCCTCCCGAATC
CGATGCTTGTGCGCTTCGAGCGGGACATGGGCCTTCTGGATGCCTCCGGC
GCCGGCATCGGCGACGACGTCGGCATCGCCCTCGCCAATGTCTTGCCGCT
GCTGCCGGCCGCCACTGCCCTCCGCCTGCCCGACAACCGCCTCAGTGACG
CCGCCCTTGCCGCCTTTGTCGCCGCGGCGTCCCGCATGCCGGCGCTGACA
GAGCTGGACCTCTCCCGGAACCGTGTCGGCCCCGTCACCACTCGCGGCCT
GTCCGCGCTGCTCCGGGGCCGGAACCCTCCGTGCGGGCTGCGGGAGCTGG
CGGTGCGGCGAGCGGGTGTCGATGATGCCGCCTGTGCCGAGCTAGTGGCG
GCCGTGACCCGCAACACAACACTGACTAGTCTCGATCTCAGTGAGAACAG
CCTCGGCGCTGCCGAGGCCTTTCACAGGCTGTCGTCGCGTGGCGAAAGCA
GCGGTGAGGCCATCGCCACCATGCTGCTGGCCAATGACACTCTGCGTCGC
CTCGACCTGTCCTGGAACGGCCTCCGGAGCGGGAGCGCCGCCGCTCTCGC
CAGCAGCCTCGCCCACAACGGCGGGCTGGAGGAGCTCAACCTGTCCAACA
ACGCGCTGGGCGATTACCCTTGCCAGGTGCTGGCCCTGGCCCTCTGCGAG
AACCGGCGGCTGCGGCGTCTCGATCTGTCCTTCACGTCGCTGGGACCGGC
GGCGGCGAGCGTCCTCGCCCACGCTCTAAAAGCCAACGCCACCCTCATCT
GGCTCTGCCTAGACGGCAACCGCATCGGCCGCGACGGCGGGGAGGCCCTC
GTGCGGGCAATGCGCCTCTCGCAGCGCGCCATGCCGCCGTCCCCG
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