mRNA_P-wetherbeei_contig10124.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10124.1.1
Unique NamemRNA_P-wetherbeei_contig10124.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: A0A6H5J9S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.850e-18
Identity = 55/163 (33.74%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    1 MHSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIRHLGFGYQPHFQRIIN----WVSLQHVAKFVDL--DWVENRRWLF 471
            MH  PAGLWSV+ P+QL+P  RA+    HR  GR+F+  S+SI+LGL+            +      R A+ +                    F+ TG LA++ AR +RF  HRVW +RH+  GY  H QR++     W+    +  + DL  D +E R  +F
Sbjct:  106 MHILPAGLWSVIAPLQLNPSFRAKHRAAHRRLGRLFIFMSVSISLGLVPLVLGVAPTTTATGDSRGGRGALLFAGY-----------------FLVTGLLAVHHARNKRFADHRVWMLRHVAMGYSVHMQRLLGHLTWWIFPLLMPGYTDLTNDGMELRARVF 251          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: D7FX31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX31_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.350e-18
Identity = 60/174 (34.48%), Postives = 91/174 (52.30%), Query Frame = 1
Query:    1 MHSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIRHLGFGYQPHFQRII---NWVSLQHVA--KFVDLDWVENRRWLFDVCSNVALLAVV 507
            MH  PAGLWSV+ P+QL+P  RA+    HR  GR+F+  S+S+ALG++              ++ S  + IR   +  V    F  + +    F+ATG LA   AR +RF  HR+W +RH+  GY  H QR++   +W ++  VA  K+ +L   E      DV     L+++V
Sbjct:   76 MHILPAGLWSVIAPLQLNPSFRAKHRTAHRRLGRLFIFMSVSMALGVVP-------------IVLSGASLIR--RSVAVDGGLFTLAAY----FLATGVLAATHARSKRFADHRIWILRHVAMGYAAHVQRLLAALSWWAIPLVAPAKYTELS-PEGALLRGDVFGGYFLVSIV 229          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: D7FX30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX30_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.730e-17
Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 1
Query:    1 MHSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIRHLGFGYQPHFQRII 399
            MH  PAGLWSV+ P+QL P  RA+    HR  GR+F+  S+SI+LGL+      ++G  T+    + R ++ +                    F+ TG LA++ AR +RF  HRVW +RH+  GY  H QR++
Sbjct:  107 MHILPAGLWSVIAPLQLSPSFRAKHRTAHRRLGRLFIFMSVSISLGLVPLV---LSGAPTTPNWSNGRESLVFAGY-----------------FLVTGLLAVHHARNKRFADHRVWMLRHVAMGYSVHMQRLL 219          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: A0A3S0LG82_9BURK (DUF2306 domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3S0LG82_9BURK)

HSP 1 Score: 61.6 bits (148), Expect = 3.430e-8
Identity = 43/121 (35.54%), Postives = 57/121 (47.11%), Query Frame = 1
Query:    1 MHSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALG--LLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIR 357
            +H F A +W + G +QL P +R   P LHRW GR++LCCS ++ALG   L + R  V G     L  S  NA+                       +  GA A  +AR  RF  HR WA+R
Sbjct:   91 LHLFFAVVWVLSGVIQLVPAIRRHLPALHRWNGRLYLCCSAALALGGLWLVWVRGGVVGDVGQHLAISI-NAL---------------------LILGCGAKAWQAARSHRFSDHRRWALR 189          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: A0A1D7NKE5_9SPHN (Putative membrane protein n=1 Tax=Porphyrobacter sp. LM 6 TaxID=1896196 RepID=A0A1D7NKE5_9SPHN)

HSP 1 Score: 58.9 bits (141), Expect = 1.790e-7
Identity = 44/125 (35.20%), Postives = 59/125 (47.20%), Query Frame = 1
Query:   31 VLGPMQLHPGLRAQRPLLHRWCGRIFLC-CSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIRHLGFGYQPHFQRIIN 402
            V+ P Q  PGLR  RP LHRW GR+FL  C ++  LG+                LGS    I+WP + ++P       W  +       A+A  +ARRR F  HR +AIR    G    + R+IN
Sbjct:   69 VIAPFQFVPGLRQNRPQLHRWLGRVFLANCMVAAILGIY---------------LGST---IQWPGS-RIPLSILGALWFLF------AAIAWQAARRRDFANHRRFAIRAFALGGAFVWVRLIN 168          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: UPI00191FF0A5 (DUF2306 domain-containing protein n=2 Tax=Piscinibacter sp. HJYY11 TaxID=2801333 RepID=UPI00191FF0A5)

HSP 1 Score: 57.8 bits (138), Expect = 4.460e-7
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1
Query:    4 HSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTD----KVPRRRFNTSWHKWM 276
            H+F AGL  +LGP Q    LRA+RP LHRW GRI+L   + +  G+     +++A     A LG A  AI W +T     +  RR       +WM
Sbjct:   55 HAFAAGLALLLGPWQFSSRLRARRPQLHRWVGRIYLVAGIVVG-GVSGLLLSRLAQGGWVAQLGFACLAIAWLYTGYRGYRAIRRGERAQHRRWM 148          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: A0A844AVD2_9BURK (DUF2306 domain-containing protein n=1 Tax=Caenimonas koreensis DSM 17982 TaxID=1121255 RepID=A0A844AVD2_9BURK)

HSP 1 Score: 57.0 bits (136), Expect = 7.950e-7
Identity = 40/124 (32.26%), Postives = 57/124 (45.97%), Query Frame = 1
Query:    4 HSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIRHLGFGY 375
            H   + L  VLGP Q +  LRA+RP LHRW GRI+L  ++ +  G+   + +  A     A  G A  A+ W                     + TGA+A  +AR R F+ HR W IR+    +
Sbjct:   51 HILASALALVLGPFQFNTRLRARRPALHRWMGRIYLGVAVLVG-GIAGLYMSYYAFGGLLAKSGFATLALGW---------------------LYTGAMAYVAARARDFNAHRRWMIRNFALTF 152          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: A0A1X4NTA5_9RHOB (Uncharacterized protein n=2 Tax=Marivita cryptomonadis TaxID=505252 RepID=A0A1X4NTA5_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 1.020e-5
Identity = 40/119 (33.61%), Postives = 53/119 (44.54%), Query Frame = 1
Query:    1 MHSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIR 357
            +H   A +  V G +Q  P LRA+RP+LHRW GR++  C L    G+  F+    A       LG    A+ W                     + T A A+  ARRR F +HRVW IR
Sbjct:   49 LHVTLAPVALVAGVLQFMPKLRARRPVLHRWTGRLYALCVL--VSGVAGFWLGLFAPGGWVPGLGFMILAVLW---------------------IGTTAKAVYHARRREFAQHRVWMIR 144          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: A0A539DF69_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A539DF69_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 7.850e-5
Identity = 41/118 (34.75%), Postives = 54/118 (45.76%), Query Frame = 1
Query:    4 HSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIR 357
            H   A + ++ G MQL P +R   P LHRW GR FL  +  +AL    F+   V G   SA+  SA   I                    +  +  G LA   A +RRFD+HRVWA+R
Sbjct:   79 HVLLASVVTLAGLMQLIPAIRRAVPSLHRWTGRTFLLVAGFMALS--GFWLTLVRGTSLSAV-SSAAIVI------------------DGLLILVFGGLAWRHAVKRRFDQHRVWAMR 175          
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Match: A0A327T0F8_9ACTN (Putative membrane protein n=1 Tax=Kitasatospora sp. SolWspMP-SS2h TaxID=1305729 RepID=A0A327T0F8_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 8.290e-5
Identity = 37/108 (34.26%), Postives = 49/108 (45.37%), Query Frame = 1
Query:   34 LGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSFFRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGALALNSARRRRFDRHRVWAIR 357
            LGP+Q  PGLRA+RP LHRW GR+++  + +  LG L              LL         PH    P      +    ++   T AL L+ AR RR   HR W +R
Sbjct:   79 LGPLQFLPGLRARRPALHRWTGRLYVLAAAATGLGGL--------------LLA--------PHGLHPPVAPLGFTVLALLTLTTT-ALGLHHARHRRLAAHRAWMLR 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5J9S6_9PHAE4.850e-1833.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX31_ECTSI8.350e-1834.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX30_ECTSI1.730e-1736.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3S0LG82_9BURK3.430e-835.54DUF2306 domain-containing protein n=1 Tax=Burkhold... [more]
A0A1D7NKE5_9SPHN1.790e-735.20Putative membrane protein n=1 Tax=Porphyrobacter s... [more]
UPI00191FF0A54.460e-737.89DUF2306 domain-containing protein n=2 Tax=Piscinib... [more]
A0A844AVD2_9BURK7.950e-732.26DUF2306 domain-containing protein n=1 Tax=Caenimon... [more]
A0A1X4NTA5_9RHOB1.020e-533.61Uncharacterized protein n=2 Tax=Marivita cryptomon... [more]
A0A539DF69_9BACT7.850e-534.75Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A327T0F8_9ACTN8.290e-534.26Putative membrane protein n=1 Tax=Kitasatospora sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10124contigP-wetherbeei_contig10124:1183..1844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3055.EDP01762
Model size507
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categorysignal anchor
Exons3
Evalue3.78e-17
EggNOG OGs2DZZC@1|root,2S7FI@2759|Eukaryota,381SH@33090|Viridiplantae,34NIV@3041|Chlorophyta
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.6962762-CDS-P-wetherbeei_contig10124:1182..14191683185855.6962762-CDS-P-wetherbeei_contig10124:1182..1419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10124 1183..1419 -
1683185855.70445-CDS-P-wetherbeei_contig10124:1525..16291683185855.70445-CDS-P-wetherbeei_contig10124:1525..1629Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10124 1526..1629 -
1683185855.7135587-CDS-P-wetherbeei_contig10124:1678..18441683185855.7135587-CDS-P-wetherbeei_contig10124:1678..1844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10124 1679..1844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10124.1.1prot_P-wetherbeei_contig10124.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10124 1183..1844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10124.1.1

>prot_P-wetherbeei_contig10124.1.1 ID=prot_P-wetherbeei_contig10124.1.1|Name=mRNA_P-wetherbeei_contig10124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MHSFPAGLWSVLGPMQLHPGLRAQRPLLHRWCGRIFLCCSLSIALGLLSF
FRNKVAGKKTSALLGSARNAIRWPHTDKVPRRRFNTSWHKWMSFVATGAL
ALNSARRRRFDRHRVWAIRHLGFGYQPHFQRIINWVSLQHVAKFVDLDWV
ENRRWLFDVCSNVALLAVV
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mRNA from alignment at P-wetherbeei_contig10124:1183..1844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10124.1.1 ID=mRNA_P-wetherbeei_contig10124.1.1|Name=mRNA_P-wetherbeei_contig10124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=662bp|location=Sequence derived from alignment at P-wetherbeei_contig10124:1183..1844- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTCTTTCCCAGCGGGGTTGTGGAGCGTGCTAGGGCCAATGCAGCT GCATCCGGGCCTTCGAGCGCAGCGGCCGCTGCTGCATCGGTGGTGCGGAA GAATCTTCTTGTGCTGCAGCCTTTCCATCGCTCTGGGCCTGCTGAGCTTC TTCCGCAACAAGGTGGGTCACTAGGAAGAGAAGAGCAGACGGGGCATTCA AATATTTAAGTCCAGCTGGGAAGAAAACATCGGCACTTTTGGGATCGGCC CGAAACGCAATTCGCTGGCCGCACACCGATAAAGTTCCCCGCCGGCGCTT CAATACGTCGTGGCATAAAGTCCCGACCTACCACCTAATCTCCTTCCTAT CCCGATCTTCTCCAAGCGCAGGTGACCTTTACCGCTTACGACACGCCGAT CATGTTCACCTCCATCGTGGTCCAGTGGATGTCGTTTGTCGCCACGGGCG CGCTCGCCCTTAACAGCGCCCGCCGTCGGCGCTTCGACCGCCACCGCGTC TGGGCGATCCGCCACCTAGGCTTCGGCTATCAGCCGCACTTTCAGCGAAT CATAAACTGGGTTTCGCTGCAGCACGTGGCCAAATTTGTTGACTTGGATT GGGTGGAAAATCGCCGGTGGTTGTTTGATGTGTGTTCGAATGTCGCGCTG CTTGCGGTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10124:1183..1844-

>mRNA_P-wetherbeei_contig10124.1.1 ID=mRNA_P-wetherbeei_contig10124.1.1|Name=mRNA_P-wetherbeei_contig10124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig10124:1183..1844- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTCTTTCCCAGCGGGGTTGTGGAGCGTGCTAGGGCCAATGCAGCT
GCATCCGGGCCTTCGAGCGCAGCGGCCGCTGCTGCATCGGTGGTGCGGAA
GAATCTTCTTGTGCTGCAGCCTTTCCATCGCTCTGGGCCTGCTGAGCTTC
TTCCGCAACAAGGTGGCTGGGAAGAAAACATCGGCACTTTTGGGATCGGC
CCGAAACGCAATTCGCTGGCCGCACACCGATAAAGTTCCCCGCCGGCGCT
TCAATACGTCGTGGCATAAATGGATGTCGTTTGTCGCCACGGGCGCGCTC
GCCCTTAACAGCGCCCGCCGTCGGCGCTTCGACCGCCACCGCGTCTGGGC
GATCCGCCACCTAGGCTTCGGCTATCAGCCGCACTTTCAGCGAATCATAA
ACTGGGTTTCGCTGCAGCACGTGGCCAAATTTGTTGACTTGGATTGGGTG
GAAAATCGCCGGTGGTTGTTTGATGTGTGTTCGAATGTCGCGCTGCTTGC
GGTCGTC
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