mRNA_P-wetherbeei_contig10120.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10120.2.1
Unique NamemRNA_P-wetherbeei_contig10120.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: A0A7S2D233_9STRA (Choline transporter-like protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D233_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.030e-21
Identity = 56/118 (47.46%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   28 FNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAGWLLGVTGGAGMAL-LAAFGAFAGFFMATVSMSVVGSAVATVFVCFATDHLVFGR 378
            FNR+A  + A+YG + + AG++T SLF R GWTAIVND L+ N+L L C+   A   + G   G  +G   G+  AL LA +G   G+F+  V M +V SAVATVFVCFA D   F R
Sbjct:   85 FNRWAFVFVAVYGLEFKEAGQKTHSLFRRLGWTAIVNDDLIQNSLALGCLVTGAFVGIVGFTYG--MGAGLGSDNALELAIWGLVIGYFLTKVLMGLVDSAVATVFVCFAQDPKAFQR 200          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: A0A7S2Y4U5_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4U5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.660e-19
Identity = 57/117 (48.72%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   19 VSVFNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAGWLLGVT---GGAGMALLAAFGAFAGFFMATVSMSVVGSAVATVFVCFATD 360
            +SVF RYAL Y A+ G  L TAG ET +LF RRGW+AIVND L   AL   C  VA +    G+A+G+    T   G    A L+  G F GF + ++ M+V+ SAVATVF+CFA D
Sbjct:   89 LSVFTRYALVYAALTGTSLTTAGAETVALFRRRGWSAIVNDDLTTVALRAGCAVVAVV----GMASGFAYARTMELGSTYEAFLSVCGFFIGFGVCSILMTVIDSAVATVFLCFAED 201          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: A0A7S1CLT9_9STRA (Choline transporter-like protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLT9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.210e-14
Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   19 VSVFNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAGWLLGV---TGGAGMALLAAFGAFAGFFMATVSMSVVGSAVATVFVCFATDHLVFGRRVLTH 393
            V  FN++A CY  IYG D R+AG   ++LF  RGWT ++ND L+  AL++ C+ V     + G  A W +G      G+ +   A      GF M  +  +V+ S+VATVFVC+A +    G     H
Sbjct:  397 VEYFNKWAFCYVGIYGKDFRSAGSAVFALFRDRGWTTVINDDLIGTALSIGCLVVGVGTGIIG--AIWAVGTDPNATGSWIFASAFISLIIGFMMCAIVSTVITSSVATVFVCWAENPEALGHTHPEH 522          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: A0A7S3MAD2_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAD2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.180e-14
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   19 VSVFNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAGWLLGVTGGAGMALLAAFGAFAGFFMATVSMSVVGSAVATVFVCFATD 360
            V  FNRYALC+ AIY +D RTA     +LF  RGW+ ++ND ++D  + +  + +       G   G L G+ G A   LL  FG  AG+ ++ V++S + SAV+TV+VC+  +
Sbjct:  342 VVYFNRYALCFVAIYHSDFRTASVSASNLFRTRGWSTLLNDDIIDVVMNIGHVIIGTTSMSTGYIYGRLTGL-GHAYTVLLTVFGFVAGYLLSIVALSTISSAVSTVYVCYVDN 454          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: A0A485L1E1_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1E1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.050e-14
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   19 VSVFNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAGWLLGVTGGAGMALLAAF-GAFAGFFMATVSMSVVGSAVATVFVCFATDHLVFGRRVLTH 393
            + VFNR+A  Y  IYG     AGR   +LF  RG+ AI+ND L+ NAL  A   V  LC L GLA  ++          ++  F G F G  ++ V + VV SAVATV+VCFA D +        H
Sbjct:  384 MEVFNRWAFVYVGIYGYKFTDAGRAVMTLFQSRGFDAIINDDLISNALGFASFGVGCLCALLGLAYNYINTANQFQYSEIIFPFIGLFFGIGISLVPLGVVDSAVATVYVCFAEDPVALQHSHTEH 509          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: W7TND4_9STRA (Choline transporter-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TND4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.320e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   28 FNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAGWLLGVTGGAGMALLAAFGAFAGFFMATVSMSVVGSAVATVFVCFA 354
            FNRYA  Y A+YG     +GR+ ++LF  +G T ++NDQLV N  T      A L  L G       G+ GG   A+LA  G   G  +  + +S+V SAVATVFVC+A
Sbjct:  531 FNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGY-KAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWA 638          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: A0A0W8C422_PHYNI (Choline transporter-like protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C422_PHYNI)

HSP 1 Score: 70.9 bits (172), Expect = 3.860e-13
Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 1
Query:   28 FNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAGWLLGVTGGAGMALLAAFGAFAGFFMATVSMSVVGSAVATVFVCFATDHLVFGR 378
            FNR+A  Y  +YG    +AG+    LF +RG+TA++ND LV   + L  I                       G+ALLA  G   GF +A   ++V+ S+VAT+FVCFA D   F R
Sbjct:    4 FNRWAYVYVGVYGYSFMSAGKAVSQLFHQRGFTALINDDLVHIVIRLTAI-----------------------GVALLAILGFIIGFSVALTPLAVISSSVATIFVCFAEDPAPFQR 97          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: G4Z6R9_PHYSP (Choline transporter-like protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6R9_PHYSP)

HSP 1 Score: 72.0 bits (175), Expect = 4.150e-12
Identity = 49/123 (39.84%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   31 NRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLC--GLAAGWLLGVTG----GAGMALLAAFGAFAGFFMATVSMSVVGSAVATVFVCFATDHLVFGRR 381
            N++A  Y  IYG D  T+G+   SLF  RGWTAI+ND LV  AL +         T C  G+  G+L   +     G+  A+L+  G FAG  +  +   VV +A+ T+FVCFA D L  GR 
Sbjct:  305 NQWAFVYIGIYGNDFYTSGKAVISLFKNRGWTAIINDDLVKGALRIGI-------TTCFIGILLGYLSPASWFEPLGSRFAILSLAGLFAGTGITVIFSQVVVAALHTIFVCFAEDPLPLGRN 420          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: A0A024GD38_9STRA (Choline transporter-like protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GD38_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.900e-12
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   28 FNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAGWL---LGVTGGAG------------MALLAAFGAFAGFFMATVSMSVVGSAVATVFVCFATDHLVFGR 378
            FN++A C+ A+YG+ L  AG +T++L   RGWTA+VND L+ N L++ C+ V  L    G+ A WL   L  T                + L     +   F +++   SV+ S V TVF+CFA D  VF R
Sbjct:  353 FNKFAFCHVAMYGSSLGKAGTDTFALLRNRGWTALVNDSLISNVLSVGCLLVGLLSG--GIGASWLYLTLNCTQTEAALHPEECETFSVVILSFVICSTTAFAISSTISSVLESVVITVFICFAEDPAVFER 482          
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Match: A0A485LJ83_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ83_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.010e-12
Identity = 50/128 (39.06%), Postives = 62/128 (48.44%), Query Frame = 1
Query:   19 VSVFNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLVDNALTLACIAVAALCTLCGLAAG--------------WLLGVTGGAGMALLAAFGAFAGFFMATVSMSVVGSAVATVFVCFATD 360
            V  FN+YA  Y  IYG     AG+ETW LF + GW+AI ND L+DN L    + V     L G AAG              W   +   A  A L   G   GF +  + M+V+ S+VAT FV FA D
Sbjct:  333 VQYFNKYAYSYVGIYGFSFLRAGKETWELFEKMGWSAIANDSLIDNVLFAGSLFVG----LGGAAAGYGAVSYDRQYNNRLWTQNLENPA--ATLGMAGLLIGFSICYIVMAVINSSVATAFVLFAED 454          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10120.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2D233_9STRA5.030e-2147.46Choline transporter-like protein n=1 Tax=Florencie... [more]
A0A7S2Y4U5_9STRA1.660e-1948.72Choline transporter-like protein n=1 Tax=Fibrocaps... [more]
A0A7S1CLT9_9STRA1.210e-1436.72Choline transporter-like protein n=1 Tax=Bicosoeci... [more]
A0A7S3MAD2_9STRA2.180e-1438.60Choline transporter-like protein (Fragment) n=1 Ta... [more]
A0A485L1E1_9STRA3.050e-1440.48Choline transporter-like protein n=1 Tax=Aphanomyc... [more]
W7TND4_9STRA4.320e-1442.20Choline transporter-like protein n=2 Tax=Monodopsi... [more]
A0A0W8C422_PHYNI3.860e-1336.75Choline transporter-like protein n=1 Tax=Phytophth... [more]
G4Z6R9_PHYSP4.150e-1239.84Choline transporter-like protein n=1 Tax=Phytophth... [more]
A0A024GD38_9STRA5.900e-1236.36Choline transporter-like protein n=2 Tax=Albugo ca... [more]
A0A485LJ83_9STRA8.010e-1239.06Choline transporter-like protein n=1 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10120contigP-wetherbeei_contig10120:1662..2345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T010762
PFAMsCholine_transpo
Model size399
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal anchor
Exons2
Evalue1.94e-15
EggNOG OGsKOG1362@1|root,KOG1362@2759|Eukaryota,1MB8C@121069|Pythiales
DescriptionPNS1. Source PGD
Cds size399
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.629576-CDS-P-wetherbeei_contig10120:1661..19161683185855.629576-CDS-P-wetherbeei_contig10120:1661..1916Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10120 1662..1916 -
1683185855.6398036-CDS-P-wetherbeei_contig10120:2201..23451683185855.6398036-CDS-P-wetherbeei_contig10120:2201..2345Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10120 2202..2345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10120.2.1prot_P-wetherbeei_contig10120.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10120 1662..2345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10120.2.1

>prot_P-wetherbeei_contig10120.2.1 ID=prot_P-wetherbeei_contig10120.2.1|Name=mRNA_P-wetherbeei_contig10120.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MPRFFQVSVFNRYALCYCAIYGADLRTAGRETWSLFGRRGWTAIVNDQLV
DNALTLACIAVAALCTLCGLAAGWLLGVTGGAGMALLAAFGAFAGFFMAT
VSMSVVGSAVATVFVCFATDHLVFGRRVLTHS*
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mRNA from alignment at P-wetherbeei_contig10120:1662..2345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10120.2.1 ID=mRNA_P-wetherbeei_contig10120.2.1|Name=mRNA_P-wetherbeei_contig10120.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig10120:1662..2345- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCGCTTTTTCCAGGTGTCGGTCTTCAACCGCTACGCGCTCTGCTA CTGCGCCATCTACGGCGCCGACCTGCGCACGGCCGGCCGCGAGACGTGGA GCCTCTTTGGACGCCGCGGGTGGACGGCCATCGTCAACGACCAGGTTAGT TTGGCGTTGGGACTGCGGGCGGGCGGAGTTGTTGTGATGGCGATTTTGTT CGGATTCTGCTGCACGATGCCACCCCACCCACCGGGGCAGGCGGGCTGAT TCATTGCACAGCCAGCCGAGAATTTGTTTCTCGGGCTTACTTGTAAGAGG GAAGCGAGTTTGGCAGGAAGGGAGGAGTCGAGCAGTGCAGGGTTCTTGCC TCCTTTGCCATGCCGTTTCCTAAGGTTACAAGTTCATCATTCCCTTTTCT TTTCCCACCCGTTGGCAAAACCAAATCAGCTGGTCGACAACGCGCTGACG CTGGCCTGCATCGCCGTGGCGGCGCTCTGCACGCTCTGTGGACTCGCGGC CGGCTGGCTGCTCGGCGTCACCGGGGGCGCTGGCATGGCGCTCCTTGCGG CGTTTGGCGCGTTCGCGGGCTTCTTCATGGCGACTGTCAGCATGTCTGTG GTGGGGAGCGCCGTCGCCACCGTTTTCGTGTGCTTCGCCACGGACCACCT CGTGTTTGGCAGGCGAGTTTTGACCCACTCTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10120:1662..2345-

>mRNA_P-wetherbeei_contig10120.2.1 ID=mRNA_P-wetherbeei_contig10120.2.1|Name=mRNA_P-wetherbeei_contig10120.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig10120:1662..2345- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCGCTTTTTCCAGGTGTCGGTCTTCAACCGCTACGCGCTCTGCTA
CTGCGCCATCTACGGCGCCGACCTGCGCACGGCCGGCCGCGAGACGTGGA
GCCTCTTTGGACGCCGCGGGTGGACGGCCATCGTCAACGACCAGCTGGTC
GACAACGCGCTGACGCTGGCCTGCATCGCCGTGGCGGCGCTCTGCACGCT
CTGTGGACTCGCGGCCGGCTGGCTGCTCGGCGTCACCGGGGGCGCTGGCA
TGGCGCTCCTTGCGGCGTTTGGCGCGTTCGCGGGCTTCTTCATGGCGACT
GTCAGCATGTCTGTGGTGGGGAGCGCCGTCGCCACCGTTTTCGTGTGCTT
CGCCACGGACCACCTCGTGTTTGGCAGGCGAGTTTTGACCCACTCTTAG
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