mRNA_P-wetherbeei_contig10111.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10111.1.1
Unique NamemRNA_P-wetherbeei_contig10111.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: A0A1E7FMC8_9STRA (GTP-binding nuclear protein n=19 Tax=Ochrophyta TaxID=2696291 RepID=A0A1E7FMC8_9STRA)

HSP 1 Score: 258 bits (658), Expect = 1.000e-85
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:   16 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEV PL FHTNRGP+KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKV +
Sbjct:    7 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLNFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKA 131
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: D7G7A6_ECTSI (GTP-binding nuclear protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7A6_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.890e-85
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 1 
Query:    4 AAQEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            A + PEFKLILVGDGGVGKTTFVKRH+TGEFEKKYVATLGVEVRPL FHTNRGP+KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCE+IPIVLCGNKVEIKDRKV +
Sbjct:    2 AQEMPEFKLILVGDGGVGKTTFVKRHVTGEFEKKYVATLGVEVRPLPFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCEHIPIVLCGNKVEIKDRKVKA 130
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: A0A7S2RFE4_9STRA (GTP-binding nuclear protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RFE4_9STRA)

HSP 1 Score: 257 bits (656), Expect = 2.090e-85
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1 
Query:    4 AAQ-EPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            AAQ  PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEV PL FHTNRGP+KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKV +
Sbjct:    3 AAQGSPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKA 132
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: A0A7R9ZLZ6_9STRA (GTP-binding nuclear protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLZ6_9STRA)

HSP 1 Score: 258 bits (658), Expect = 6.370e-85
Identity = 121/128 (94.53%), Postives = 124/128 (96.88%), Query Frame = 1 
Query:    7 AQEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            +QEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEV PL FHTNRGP+KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVL GNKVEIKDRKV +
Sbjct:   60 SQEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLTFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLTGNKVEIKDRKVKA 187
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: A0A7S3P9E4_9STRA (GTP-binding nuclear protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P9E4_9STRA)

HSP 1 Score: 255 bits (652), Expect = 8.230e-85
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    7 AQEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            AQ PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEV PL FHTNRGP+KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVL GNKVEIKDRKV +
Sbjct:    4 AQMPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLTGNKVEIKDRKVKA 131
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: A0A835YR82_9STRA (GTP-binding nuclear protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR82_9STRA)

HSP 1 Score: 253 bits (646), Expect = 6.100e-84
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    7 AQEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            A+ PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPL FHTNRGP+KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP WHRDLTRVCENIPIVL GNKVEIKDRKV +
Sbjct:    2 AEMPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPYWHRDLTRVCENIPIVLTGNKVEIKDRKVKA 129
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: A0A7S1UW08_9STRA (GTP-binding nuclear protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1UW08_9STRA)

HSP 1 Score: 255 bits (651), Expect = 6.280e-84
Identity = 120/129 (93.02%), Postives = 123/129 (95.35%), Query Frame = 1 
Query:    4 AAQEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            A + PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEV PL FHTNRGP+KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVL GNKVEIKDRKV +
Sbjct:   54 AQEPPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLTFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLVGNKVEIKDRKVKA 182
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: A0A1S3I259_LINUN (GTP-binding nuclear protein n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I259_LINUN)

HSP 1 Score: 252 bits (644), Expect = 1.500e-83
Identity = 115/130 (88.46%), Postives = 122/130 (93.85%), Query Frame = 1 
Query:    1 QAAQEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            Q   EP FKL+LVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEV PL FHTNRGP+KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT+R+TYKNVPNWHRDL RVCENIP+VLCGNKV+IKDRKV +
Sbjct:    6 QGTDEPTFKLVLVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLLFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPMVLCGNKVDIKDRKVKA 135
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: A0A7S2CHG2_9STRA (GTP-binding nuclear protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHG2_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.580e-83
Identity = 118/125 (94.40%), Postives = 121/125 (96.80%), Query Frame = 1 
Query:   16 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVSS 390
            PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEV PL FHTNRG L+FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKV+IKDRKV +
Sbjct:   22 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLSFHTNRGALRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVDIKDRKVKA 146
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BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Match: W7TTE5_9STRA (GTP-binding nuclear protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTE5_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.640e-83
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 1 
Query:   16 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFHTNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKV 384
            PEFKLILVGDGGVGKTTFV+RHLTGEFEK+YVATLGVEV PL FHTNRG +KFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKV
Sbjct:    6 PEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKV 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10111.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7FMC8_9STRA1.000e-8596.00GTP-binding nuclear protein n=19 Tax=Ochrophyta Ta... [more]
D7G7A6_ECTSI1.890e-8593.02GTP-binding nuclear protein n=2 Tax=Ectocarpus Tax... [more]
A0A7S2RFE4_9STRA2.090e-8594.62GTP-binding nuclear protein n=1 Tax=Eucampia antar... [more]
A0A7R9ZLZ6_9STRA6.370e-8594.53GTP-binding nuclear protein n=1 Tax=Craspedostauro... [more]
A0A7S3P9E4_9STRA8.230e-8594.53GTP-binding nuclear protein n=2 Tax=Amphora coffei... [more]
A0A835YR82_9STRA6.100e-8493.75GTP-binding nuclear protein n=2 Tax=Tribonema minu... [more]
A0A7S1UW08_9STRA6.280e-8493.02GTP-binding nuclear protein n=2 Tax=Bacillariophyt... [more]
A0A1S3I259_LINUN1.500e-8388.46GTP-binding nuclear protein n=1 Tax=Lingula unguis... [more]
A0A7S2CHG2_9STRA1.580e-8394.40GTP-binding nuclear protein n=1 Tax=Dictyocha spec... [more]
W7TTE5_9STRA3.640e-8395.12GTP-binding nuclear protein n=2 Tax=Monodopsidacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10111contigP-wetherbeei_contig10111:1144..2246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G7A6
PFAMsRas
Model size390
Max annot lvl2759|Eukaryota
KEGG koko:K07936
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0009790,GO:0009792,GO:0009987,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0044703,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0051704
Exons3
Evalue3.1e-86
EggNOG OGsKOG0096@1|root,KOG0096@2759|Eukaryota
Descriptionribosome localization
Cds size390
COG categoryA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko04031,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.29866-CDS-P-wetherbeei_contig10111:1143..12721683185855.29866-CDS-P-wetherbeei_contig10111:1143..1272Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10111 1144..1272 +
1683185855.3070729-CDS-P-wetherbeei_contig10111:1654..17971683185855.3070729-CDS-P-wetherbeei_contig10111:1654..1797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10111 1655..1797 +
1683185855.3141577-CDS-P-wetherbeei_contig10111:2128..22461683185855.3141577-CDS-P-wetherbeei_contig10111:2128..2246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10111 2129..2246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10111.1.1prot_P-wetherbeei_contig10111.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10111 1144..2246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10111.1.1

>prot_P-wetherbeei_contig10111.1.1 ID=prot_P-wetherbeei_contig10111.1.1|Name=mRNA_P-wetherbeei_contig10111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
QAAQEPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVRPLRFH
TNRGPLKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN
WHRDLTRVCENIPIVLCGNKVEIKDRKVSS
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mRNA from alignment at P-wetherbeei_contig10111:1144..2246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10111.1.1 ID=mRNA_P-wetherbeei_contig10111.1.1|Name=mRNA_P-wetherbeei_contig10111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1103bp|location=Sequence derived from alignment at P-wetherbeei_contig10111:1144..2246+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCGGCGCAGGAGCCCGAGTTTAAGCTCATCTTGGTCGGCGACGGCGG
CGTCGGCAAGACGACCTTTGTCAAGCGCCATCTCACGGGAGAGTTCGAGA
AGAAGTATGTCGCAACATTAGGTGTCGAGGTAAGTGAGAAATTTTGGACA
CTGTAGTGACTGTTTCACTCTCCTTTGTAGTTGGACGTGCCCACAACTTC
CGCGACTCTCGCAGCCCAACTCACGTGACGCTGGCACCGCGCGGCCAATT
GACTAAGCCATCTTGGATCCTCTCTGCATGACGTCGCATTCCGTTACGTT
ATTCTAACATCCGCGACGAAACGTTTCAATTTTGGAACCTGCCGAAACAT
CTGGCAACGCTGTGGCGCTTGGCCACGGACGGCGCCGTGGCAATGCACGG
CGAATAACGACGGTGAACACCGGCGGACGACGGTGGACTGTGGCGGCCAA
CGGCAACGGCGATTGCGGGCGGGCATCGTCCAATCGATGTTGCCGATGTT
GCCGACTGCAGGTGCGCCCGCTGAGGTTCCATACGAACCGGGGCCCGCTG
AAGTTCAATGTGTGGGACACGGCGGGGCAGGAGAAGTTCGGCGGGCTGCG
GGATGGGTACTACATCCAGGGCCAGTGCGCCATCATCATGTTCGACGTCA
CCAGGTAATGCGCTTGCGGCTTCTTGTGGCTTTCCTTCTGTCGTTCGGGG
TTTCTTGCCGCGCAGTTTTGGTTCTTGGTTTCGTGCTGCCGTCGTTCTTT
TCCGTTCACTCTGAGGGTTGCTGCCGGTTTTGCAAGTCACCCGGCAGCAC
TTCGCGGTTTGTGAAACGCGCCACCTTGTCAGCACCGCTTTTATTCTCAG
CATTGACGTGGCAGGTTGTAAAGTCAAAACTTCATTAATCGCGCCCTACC
TGCCCCCGCCTTGCCCGTTGTTGCAACTCGAAACCCGGACGGACGGATGG
ACGGACGGATGGACGGACGGACGGAACGGCGGTAGTCGCATCACGTACAA
GAACGTGCCGAACTGGCATCGCGACCTGACGCGCGTCTGCGAGAACATCC
CGATCGTGCTCTGCGGCAACAAGGTCGAGATCAAGGACCGCAAGGTTAGT
TCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10111:1144..2246+

>mRNA_P-wetherbeei_contig10111.1.1 ID=mRNA_P-wetherbeei_contig10111.1.1|Name=mRNA_P-wetherbeei_contig10111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig10111:1144..2246+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCGGCGCAGGAGCCCGAGTTTAAGCTCATCTTGGTCGGCGACGGCGG
CGTCGGCAAGACGACCTTTGTCAAGCGCCATCTCACGGGAGAGTTCGAGA
AGAAGTATGTCGCAACATTAGGTGTCGAGGTGCGCCCGCTGAGGTTCCAT
ACGAACCGGGGCCCGCTGAAGTTCAATGTGTGGGACACGGCGGGGCAGGA
GAAGTTCGGCGGGCTGCGGGATGGGTACTACATCCAGGGCCAGTGCGCCA
TCATCATGTTCGACGTCACCAGTCGCATCACGTACAAGAACGTGCCGAAC
TGGCATCGCGACCTGACGCGCGTCTGCGAGAACATCCCGATCGTGCTCTG
CGGCAACAAGGTCGAGATCAAGGACCGCAAGGTTAGTTCA
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