mRNA_P-wetherbeei_contig1011.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1011.6.1
Unique NamemRNA_P-wetherbeei_contig1011.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1011.6.1 vs. uniprot
Match: A0A836CMF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.100e-6
Identity = 46/128 (35.94%), Postives = 55/128 (42.97%), Query Frame = 1 
Query:  148 ACRLLRAAVALLPAGNGPPSARDVSQPSFNLALVLWRLGRRDAACVHWLRARGHSTDAGAARHDALLRAARLRLADGGGGDRNGGGSRSSDRGHAPLYPWEAAGXXXXXLRTPPSQACALDVLVFEHW 531
            AC  LRAA+A  PA   P         +FNLAL+LWR GRR+AAC  WLRAR    ++    + A LR AR   A                                  L  PP+Q  ALDV+V  HW
Sbjct:  782 ACGHLRAALAFEPAAVAP---------AFNLALLLWRGGRREAACRAWLRARAFGEESDVDVYAARLREARQCKA----------AXXXXXXXXXXXXXXXRRAQGGCGLEVPPAQLYALDVMVLTHW 890
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1011.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CMF7_9STRA1.100e-635.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1011contigP-wetherbeei_contig1011:6959..7588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size531
Hectar predicted targeting categoryother localisation
Exons2
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.2685263-CDS-P-wetherbeei_contig1011:6958..73041683185855.2685263-CDS-P-wetherbeei_contig1011:6958..7304Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1011 6959..7304 -
1683185855.276329-CDS-P-wetherbeei_contig1011:7403..75881683185855.276329-CDS-P-wetherbeei_contig1011:7403..7588Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1011 7404..7588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1011.6.1prot_P-wetherbeei_contig1011.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1011 6959..7588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1011.6.1

>prot_P-wetherbeei_contig1011.6.1 ID=prot_P-wetherbeei_contig1011.6.1|Name=mRNA_P-wetherbeei_contig1011.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
MRGNGRSAGGGGGGRSSGSHGCARRKALALAVAYNNAALTLVVRGRLIEA
CRLLRAAVALLPAGNGPPSARDVSQPSFNLALVLWRLGRRDAACVHWLRA
RGHSTDAGAARHDALLRAARLRLADGGGGDRNGGGSRSSDRGHAPLYPWE
AAGGGGGGLRTPPSQACALDVLVFEHW
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mRNA from alignment at P-wetherbeei_contig1011:6959..7588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1011.6.1 ID=mRNA_P-wetherbeei_contig1011.6.1|Name=mRNA_P-wetherbeei_contig1011.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig1011:6959..7588- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGGCAATGGCCGCAGTGCCGGAGGAGGCGGCGGTGGCAGAAGCAG
CGGCAGCCACGGCTGCGCCAGAAGGAAAGCACTGGCGCTAGCGGTCGCGT
ACAACAACGCGGCGCTGACGCTGGTCGTTCGGGGCCGCCTGATTGAGGCA
TGCCGGCTCCTCCGGGCGGCCGTCGCGCTTCTGCCGTCCGCAACGGCAAT
GACGGCGGCTGCGGCAGCAACAGCGGCGGCGGGGACAACAGCGGCAGTAG
CGGCGGCGGCGGCAGCAGGAACGGTGCCGTTCAGCGCTGGGAACGGGCCA
CCTTCGGCGCGTGATGTCTCCCAGCCGTCCTTCAACCTGGCGCTGGTGCT
GTGGCGCCTCGGCAGACGGGACGCCGCGTGCGTCCACTGGCTGCGGGCGC
GCGGCCACAGCACGGACGCCGGCGCCGCGCGGCACGATGCGCTGCTGCGA
GCCGCCCGACTGCGGCTGGCTGACGGCGGCGGCGGTGATCGCAACGGCGG
CGGCAGCAGGAGCAGCGATCGGGGGCATGCGCCGCTTTATCCTTGGGAGG
CGGCTGGCGGCGGCGGCGGCGGGCTGCGTACGCCGCCATCGCAGGCCTGC
GCCTTAGACGTACTTGTGTTCGAGCACTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1011:6959..7588-

>mRNA_P-wetherbeei_contig1011.6.1 ID=mRNA_P-wetherbeei_contig1011.6.1|Name=mRNA_P-wetherbeei_contig1011.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig1011:6959..7588- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGGCAATGGCCGCAGTGCCGGAGGAGGCGGCGGTGGCAGAAGCAG
CGGCAGCCACGGCTGCGCCAGAAGGAAAGCACTGGCGCTAGCGGTCGCGT
ACAACAACGCGGCGCTGACGCTGGTCGTTCGGGGCCGCCTGATTGAGGCA
TGCCGGCTCCTCCGGGCGGCCGTCGCGCTTCTGCCCGCTGGGAACGGGCC
ACCTTCGGCGCGTGATGTCTCCCAGCCGTCCTTCAACCTGGCGCTGGTGC
TGTGGCGCCTCGGCAGACGGGACGCCGCGTGCGTCCACTGGCTGCGGGCG
CGCGGCCACAGCACGGACGCCGGCGCCGCGCGGCACGATGCGCTGCTGCG
AGCCGCCCGACTGCGGCTGGCTGACGGCGGCGGCGGTGATCGCAACGGCG
GCGGCAGCAGGAGCAGCGATCGGGGGCATGCGCCGCTTTATCCTTGGGAG
GCGGCTGGCGGCGGCGGCGGCGGGCTGCGTACGCCGCCATCGCAGGCCTG
CGCCTTAGACGTACTTGTGTTCGAGCACTGG
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