mRNA_P-wetherbeei_contig1011.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1011.1.1
Unique NamemRNA_P-wetherbeei_contig1011.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: A0A835YT77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT77_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.070e-63
Identity = 96/135 (71.11%), Postives = 114/135 (84.44%), Query Frame = 1
Query:   25 DKLVQGYNDLTYLVSNWDAVTEKCDANGVCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDL 429
            D+L+ GY  LTYL+ NWD  T  CDANG CD+ PD VR+YLGLRSTTDPLFQ+E+VL KAQ YIDDPD  ++Y++AA+ FQSTQ+MANSMAFTSSFGE+NPGGGKDQV KYLE+SR QVV CQ+ALG IV++L L
Sbjct:   68 DRLLNGYKQLTYLLDNWDKETTSCDANGKCDRKPDNVRRYLGLRSTTDPLFQIERVLDKAQAYIDDPDDSDKYIEAAETFQSTQSMANSMAFTSSFGEYNPGGGKDQVDKYLEESRKQVVLCQQALGDIVQILKL 202          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: A0A0G4HPE9_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HPE9_9ALVE)

HSP 1 Score: 168 bits (426), Expect = 2.510e-50
Identity = 78/136 (57.35%), Postives = 105/136 (77.21%), Query Frame = 1
Query:   25 DKLVQGYNDLTYLVSNWDAVTEKCDANGVCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDLV 432
            D+L+ GY D+ YL+ NWD  T KC++   C ++ D+VRKYLGLRST DPLFQ EK +Q+ Q  +DDPD +E+++ AA++F S Q+MANSMA+TSSFGE+NPGGG D VA+YLE SR QV+ C+ AL  ++KLL L+
Sbjct:   71 DRLLTGYKDIVYLLENWDKETTKCESPTKCVRDADVVRKYLGLRSTKDPLFQAEKTIQQLQGNLDDPDDIEQFISAAEEFSSAQSMANSMAYTSSFGEYNPGGGADAVARYLEISRKQVIICKSALEKVLKLLKLI 206          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: A0A7S1V9Y0_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9Y0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.190e-39
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   25 DKLVQGYNDLTYLVSNWDAVTEKCDANG-VCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDL 429
            +++  G+  + YL++N++  T  C  NG  C +N + VRKY+GLRSTTDPLFQ+EKV  K +N   DPD LE + DA +D+ S   M+NSMAF S FGE+NPGGG D+V KYLE+SR QV   +KAL TI+  LD+
Sbjct:   84 ERIKVGHEQIVYLLNNFEKETTVCRENGGECKRNAEPVRKYMGLRSTTDPLFQIEKVFAKVKNMDLDPDKLEGFFDATEDWNSAMNMSNSMAFISQFGEYNPGGGVDEVLKYLEESRKQVTIAEKALRTIMDCLDI 219          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: A0A7S2XZ94_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ94_9STRA)

HSP 1 Score: 139 bits (351), Expect = 8.280e-39
Identity = 66/140 (47.14%), Postives = 96/140 (68.57%), Query Frame = 1
Query:   13 FISADKLVQGYNDLTYLVSNWDAVTEKCD-ANGVCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDL 429
            F  + ++++GY  LT+L+ NW+  T  C+ A+G C +NPD VR YLGLRST  PLF +EKV  K  +Y+ D D  + Y +A +++QS  ++ANSMA+TS FGE+NPGGGKD + KYLE+S+   +    +L  I+K L+L
Sbjct:   79 FPGSSRIIEGYKGLTFLLENWEKETTICNTASGECVRNPDAVRSYLGLRSTKHPLFGIEKVFVKGNSYLPDLDNADAYTEACENYQSVASLANSMAYTSVFGEYNPGGGKDMIEKYLEESKKYTIQATDSLAQIIKALEL 218          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: A0A7S1YXG9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXG9_TRICV)

HSP 1 Score: 135 bits (340), Expect = 4.200e-37
Identity = 68/142 (47.89%), Postives = 96/142 (67.61%), Query Frame = 1
Query:    7 PYFISADKLVQGYNDLTYLVSNWDAVTEKCDANG-VCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDL 429
            P     +++  GY  + YL++N++  T  C  NG  C ++ D VRKYLGLRSTTDPLFQ+EKV  K +    DPD L+ + +A +D+ +   ++NSMAF S FGE+NPGGGKD+V KYL +++ QV+  +KAL TI+  LDL
Sbjct:   82 PTAAELERIKVGYAGIQYLLANFERETTICRENGGECKRDADAVRKYLGLRSTTDPLFQIEKVFNKVKYMDIDPDKLDAFFEATEDWNTAMTLSNSMAFISQFGEYNPGGGKDEVLKYLNEAKKQVIDAEKALKTIMDCLDL 223          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: A0A7S4I8R4_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I8R4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.780e-37
Identity = 70/136 (51.47%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   28 KLVQGYNDLTYLVSNWDAVTEKCDANG-VCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYID-DPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDL 429
            ++  G++ + YL+ NWD  T  C  NG  C ++ D VRKYLGLRSTTDPLFQ+EKV  K + Y+D DPD L+++ +AA+++ S   M+NSMAF S FGE+NPGGGKD+V KYL ++  QVV  +K L  I++ LD+
Sbjct:  101 RIKTGHDGILYLLDNWDKETTVCRENGGECKRDADAVRKYLGLRSTTDPLFQIEKVFNKVK-YMDLDPDKLDDFFEAAENWNSAMNMSNSMAFISQFGEYNPGGGKDEVLKYLNEAYKQVVDAEKNLKIIMECLDI 235          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: A0A6V2AVP8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2AVP8_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.720e-36
Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = 1
Query:    7 PYFISADKLVQGYNDLTYLVSNWDAVTEKCDANG-VCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDL 429
            P     +++  GY  + YL+ N+D  T  C  NG  C ++ D VR+Y+GLRSTTDPLFQ+EKV  KA+    DPD LE++ +A +D+ +   M+NSMAF S FGE+NPGGGKD+V KYLE+++ QVV  + +L  I+  L++
Sbjct:   70 PSAAELERIKIGYKKIAYLLENFDQETTVCKENGGECKRDADPVRRYMGLRSTTDPLFQIEKVFAKAKYMDIDPDKLEDFFEATEDWNTAVNMSNSMAFISQFGEYNPGGGKDEVLKYLEEAKKQVVLAEASLKRIMNCLEI 211          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: A0A7S2R2D0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2D0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.810e-36
Identity = 66/136 (48.53%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   25 DKLVQGYNDLTYLVSNWDAVTEKCDANG-VCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDL 429
            +++  G+  + YL+ N+D  T KC  NG  C ++ + VR+YLGLRSTTDPLFQ+EKV  KA+    DPD +E + +A +++ +   M+NSMAF S F E+NPGGGKD+V KYLE+S++QV+  +KAL  I+K L++
Sbjct:  104 ERIKVGHEQIVYLLDNFDKETTKCRENGGECKRDANSVRQYLGLRSTTDPLFQIEKVFVKAKYMDIDPDNIETFFEATEEWNTAVNMSNSMAFISQFAEYNPGGGKDEVLKYLEESKIQVILAEKALTKIMKCLEI 239          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: B8CAC8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAC8_THAPS)

HSP 1 Score: 132 bits (333), Expect = 5.150e-36
Identity = 67/133 (50.38%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   25 DKLVQGYNDLTYLVSNWDAVTEKCDANG-VCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDD--PDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIV 414
            +++  GY ++ +L+ NW+  T  C  NG  C ++ D VR+YLGLRSTTDPLFQ+EKV  K + Y+DD   D LE + +A +D+ +   M+NSMAF S FGE+NPGGGKD+V KYL +S+ QV+  +KAL TI+
Sbjct:   88 ERIKTGYQNIKFLLENWEKETTVCRENGGECKRDADAVRRYLGLRSTTDPLFQIEKVFAKVK-YMDDIDEDKLEAFFEATEDWNTAMNMSNSMAFISQFGEYNPGGGKDEVLKYLNESQKQVILAEKALKTIL 219          
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Match: B7GD04_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD04_PHATC)

HSP 1 Score: 131 bits (330), Expect = 8.740e-36
Identity = 65/131 (49.62%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   25 DKLVQGYNDLTYLVSNWDAVTEKCDANG-VCDKNPDIVRKYLGLRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAFTSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIV 414
            +++  G+  +  L+ N++A T  C  NG  C ++ + +RK LGLRSTTDPLFQ+EKV  K +N   DPD LE + +A++D+ S  +++NSMAF S FGE+NPGGGKD+V KYL +S+ QVV  +KAL TI+
Sbjct:   71 ERIRLGHAQIVDLLDNFEAATTVCRENGGECKRDAEPIRKVLGLRSTTDPLFQIEKVFNKVKNMDLDPDALEAFFEASEDWNSAMSLSNSMAFISQFGEYNPGGGKDEVLKYLNESKKQVVVAEKALKTIM 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YT77_9STRA4.070e-6371.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4HPE9_9ALVE2.510e-5057.35Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S1V9Y0_9STRA6.190e-3952.21Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S2XZ94_9STRA8.280e-3947.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1YXG9_TRICV4.200e-3747.89Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4I8R4_9STRA5.780e-3751.47Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]
A0A6V2AVP8_9STRA1.720e-3647.18Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R2D0_9STRA1.810e-3648.53Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B8CAC8_THAPS5.150e-3650.38Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
B7GD04_PHATC8.740e-3649.62Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1011contigP-wetherbeei_contig1011:3595..4620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog35128.Thaps9097
Model size435
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.45e-37
EggNOG OGs2EKA1@1|root,2SMUB@2759|Eukaryota,2XG1G@2836|Bacillariophyta
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.162882-CDS-P-wetherbeei_contig1011:3594..37311683185855.162882-CDS-P-wetherbeei_contig1011:3594..3731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1011 3595..3731 +
1683185855.1732597-CDS-P-wetherbeei_contig1011:3876..39191683185855.1732597-CDS-P-wetherbeei_contig1011:3876..3919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1011 3877..3919 +
1683185855.1802723-CDS-P-wetherbeei_contig1011:4180..43271683185855.1802723-CDS-P-wetherbeei_contig1011:4180..4327Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1011 4181..4327 +
1683185855.187426-CDS-P-wetherbeei_contig1011:4512..46201683185855.187426-CDS-P-wetherbeei_contig1011:4512..4620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1011 4513..4620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1011.1.1prot_P-wetherbeei_contig1011.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1011 3595..4620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1011.1.1

>prot_P-wetherbeei_contig1011.1.1 ID=prot_P-wetherbeei_contig1011.1.1|Name=mRNA_P-wetherbeei_contig1011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
AVPYFISADKLVQGYNDLTYLVSNWDAVTEKCDANGVCDKNPDIVRKYLG
LRSTTDPLFQVEKVLQKAQNYIDDPDVLEEYVDAADDFQSTQAMANSMAF
TSSFGEFNPGGGKDQVAKYLEQSRLQVVACQKALGTIVKLLDLV*
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mRNA from alignment at P-wetherbeei_contig1011:3595..4620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1011.1.1 ID=mRNA_P-wetherbeei_contig1011.1.1|Name=mRNA_P-wetherbeei_contig1011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1026bp|location=Sequence derived from alignment at P-wetherbeei_contig1011:3595..4620+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTCCCATACTTCATTTCTGCAGATAAACTTGTGCAAGGGTACAACGA CTTGACGTACCTGGTGTCAAATTGGGACGCCGTAACGGAGAAATGCGACG CTAACGGCGTCTGTGACAAGAACCCCGACATAGTTCGGTAAGCATCATTT TTTTTAGTTTCGGCAGGCTCTCCGATAAAAACCGATGTTCCCCAGAACCT CCGGGTTTTGTCGTTTAACTTTTCAAACGGAAAATTTACTTGTTTCACCT GCTATTATCCTGGTCACACCTGCATCGTACAGCAAATATCTGGGCCTGCG GAGCACAACAGATCCGCTATTCCAGGTACGGTGTGGCCACATCGCTGACC GCCTTCGGACTTCCAGGCGTTGTCGGGGGCACAACTACTGTTTCCATATT TTTAACTGCTCGCACTCCTATTTGGAAGGCAGGCAGGGTGCAGCCAGCAG CTGCCGTCCCCGTCCTTTCAAGCTTGCGTTTCAATGTAAGGTGACGCTGC CTTGCCTGCTGCCCGGTCGGCCGCCGAATGTCGCGCTGTCCGCAACTTCA TATAATCTTTCTATTCCTTTCCTGTTTTTCTCTCAGGTCGAAAAGGTGCT GCAGAAGGCGCAAAACTATATCGACGACCCAGACGTGCTGGAGGAGTATG TGGACGCGGCGGACGATTTCCAGTCCACCCAAGCGATGGCCAACTCGATG GCTTTCACCTCGTCGTTTGGCGAGTTCAATCCGGTGGGTCGATGAGAGTT TTCGTTTGAAGCGCTTCGACGGCTTGGCATGGAAACATGTTCTTGAGAAA CGAAACGACGGGAACCTTGGCCGATTCGCTCCTCTCCTCTTGGCGCGCCT CACTTAGCTTATTTTCCGTTCACGACCACTGCCACCTCGCACCACGCATA CCTGCTTCCGGATCACAGGGTGGAGGCAAGGACCAGGTAGCGAAGTATTT GGAGCAGTCGCGGCTGCAGGTGGTCGCATGCCAGAAGGCGCTCGGGACCA TCGTAAAGCTCCTGGACCTCGTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1011:3595..4620+

>mRNA_P-wetherbeei_contig1011.1.1 ID=mRNA_P-wetherbeei_contig1011.1.1|Name=mRNA_P-wetherbeei_contig1011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig1011:3595..4620+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTCCCATACTTCATTTCTGCAGATAAACTTGTGCAAGGGTACAACGA
CTTGACGTACCTGGTGTCAAATTGGGACGCCGTAACGGAGAAATGCGACG
CTAACGGCGTCTGTGACAAGAACCCCGACATAGTTCGCAAATATCTGGGC
CTGCGGAGCACAACAGATCCGCTATTCCAGGTCGAAAAGGTGCTGCAGAA
GGCGCAAAACTATATCGACGACCCAGACGTGCTGGAGGAGTATGTGGACG
CGGCGGACGATTTCCAGTCCACCCAAGCGATGGCCAACTCGATGGCTTTC
ACCTCGTCGTTTGGCGAGTTCAATCCGGGTGGAGGCAAGGACCAGGTAGC
GAAGTATTTGGAGCAGTCGCGGCTGCAGGTGGTCGCATGCCAGAAGGCGC
TCGGGACCATCGTAAAGCTCCTGGACCTCGTGTAG
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