mRNA_P-wetherbeei_contig10109.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10109.1.1
Unique NamemRNA_P-wetherbeei_contig10109.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10109.1.1 vs. uniprot
Match: D7G1B1_ECTSI (Calmodulin-like myosin-light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B1_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 4.460e-23
Identity = 107/340 (31.47%), Postives = 136/340 (40.00%), Query Frame = 1 
Query:  346 GHERAVTALAYLPVSMLLASAAADGRVRLWDPCAANHRLVHPG----------------------TAGHVRRWPGHYIRPLDRWTTAGAPFGCVLQLDVAAXXXXXXXXXXXXXXXXGVYAAPTAXXXXXXXXXXXXXXXXXXXXXXXXVTAMEAVVSEAHPTSGRILCPEEDERLAATLDAGSAAAYHGA-------GIGGGGRDRSGCRGFLYLMDDGDLLAVSS-EAFHRRYVLLADAGFFEVSGAVRRPPTE---------AMALRAAFRQRARVLRVLYAVSTAHHTLRALCRAVRAVNAAVQASGALNG-FPGARFVVFYRVGDGPSSDVSDRI 1245
            G+   VT L YLP+SMLL S  +DGRVR+WDPC   H+L  P                       +  H R +PG Y    + WT  G  F CV                       G  A                            V   E+V       + R +  EE    A+ +   + A +  A       G GGG         F Y    GD+L+V S + F   YVLL DA FFEVSG +               A +LRAAFR RA VLRVLYA ST    + A+ R +R    A +   AL+  FPG R  VFYR GDGP  D+++ +
Sbjct: 3249 GNRSPVTCLTYLPLSMLLVSGHSDGRVRVWDPCDRRHKLAPPPPQSLRALGSEDRETQSRKGGRRSGRHHRLFPGSYATTAEEWTEKGRTFSCVATFGAVPAKANTTERR-------GGAAGKNGRGGFLKIRELNSIVLPGGGAASLIVPDPESV------RAARAMDEEEPWDPASKIVVLTRARHKRAHSLIILPGNGGG---------FFYFTSSGDMLSVPSPKGFEEHYVLLDDASFFEVSGPLAAAQGGEQGGGGEGVAASLRAAFRARAGVLRVLYAASTGPRAVDAMARQMRDTGVAARPRRALDALFPGQRLAVFYREGDGPDRDITETV 3566
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BLAST of mRNA_P-wetherbeei_contig10109.1.1 vs. uniprot
Match: A0A7S3ZWD7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWD7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.940e-8
Identity = 80/309 (25.89%), Postives = 114/309 (36.89%), Query Frame = 1 
Query:  352 ERAVTALAYLPVSMLLASAAADGRVRLWDPCAANHRLVHPGTAGHVRRWPGHYIRPLDRWTTAGAPFGCVLQLDVAAXXXXXXXXXXXXXXXXGVYAAPTAXXXXXXXXXXXXXXXXXXXXXXXXVTAMEAVVSEAHPTSGRILCPEEDERLAATLDAGSAAAYHGAGIGGGGRDRSGCRGFLYLMDDGDLLAVSSEAFHRRYVLLA--DAGFFEVSGAVRRPPTEAMALRAAFRQRARVLRVLYAVSTAHHTLRALCRAVRAVNAAVQ---------ASGALNGFPGARFVVFYRVGDGPSSDVSDRI 1245
            E +VTAL Y P+S LLASA+ADG ++LWDP      +V    A HV   PG+Y    D W    +     + L  A                                                  T ++ V         RI    E  R A  +D                 DR     +L+++DDGD++   +++F  R VLL   DA  FE   A          L+ AF++R R+LR+ Y  S+ H ++  L  A+++V  AV            G      G    +F R G  P  DV+  I
Sbjct: 2151 EASVTALTYAPLSGLLASASADGAIKLWDPRGDCRGVVAFSQAPHVCATPGYYRALEDEWCAVESCGAREVSLKSAIAHNPWGDSEGDELLSN--------------------------KRAKVQSTLLKTVSLALGAKESRIDASSEACRSARAID-----------------DRGDFVAYLFMLDDGDVIVSVADSFDYRCVLLRNKDAALFETGDA---------GLKRAFQERHRMLRIAYCSSSKHTSVSTLLTAIKSVADAVDRPLLARSRGGDGDTLQKLGLDLALFVRAGQDPREDVTHVI 2407
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10109.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1B1_ECTSI4.460e-2331.47Calmodulin-like myosin-light chain n=1 Tax=Ectocar... [more]
A0A7S3ZWD7_9STRA7.940e-825.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10109contigP-wetherbeei_contig10109:61..2198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1B1
PFAMsAgenet,DUF4537,EF-hand_7,PUB
Model size1822
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.31e-24
EggNOG OGs2CMGM@1|root,2QQAC@2759|Eukaryota
DescriptionTudor domain
Cds size1821
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.040267-CDS-P-wetherbeei_contig10109:60..10501683185855.040267-CDS-P-wetherbeei_contig10109:60..1050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10109 61..1050 +
1683185855.0506983-CDS-P-wetherbeei_contig10109:1367..21981683185855.0506983-CDS-P-wetherbeei_contig10109:1367..2198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10109 1368..2198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10109.1.1prot_P-wetherbeei_contig10109.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10109 61..2198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10109.1.1

>prot_P-wetherbeei_contig10109.1.1 ID=prot_P-wetherbeei_contig10109.1.1|Name=mRNA_P-wetherbeei_contig10109.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=607bp
IDAAELVAGLSEAREAALASLSAETATTSAAAAQALLRLTDDRLRGLCRL
FDGDGDGRIDYREFSRRLVVSGQRQRRFLATTTASSSVSTAAVTVDLRRE
AARLGLIVPATRVLLGHERAVTALAYLPVSMLLASAAADGRVRLWDPCAA
NHRLVHPGTAGHVRRWPGHYIRPLDRWTTAGAPFGCVLQLDVAAAAAAAA
FGANSGAGAGGVYAAPTAAIAAAKRGRILIGGSGSAAAAAAVVTAMEAVV
SEAHPTSGRILCPEEDERLAATLDAGSAAAYHGAGIGGGGRDRSGCRGFL
YLMDDGDLLAVSSEAFHRRYVLLADAGFFEVSGAVRRPPTEAMALRAAFR
QRARVLRVLYAVSTAHHTLRALCRAVRAVNAAVQASGALNGFPGARFVVF
YRVGDGPSSDVSDRIFQIAGGHGRSGQPSAAAGLSLRPAGAGIVGIVSRV
HPNGTVEVVWDGATRATTIGAETIAPLLGGGSVAQALPPTSIAGKAGTGA
VAAHNARLTTGMRIRMRSAGRSGFVAAGHNSSKSGSFARSCPTSGRVSGG
GTDSDGLGSAKVAGDASEVLCIETRDMAGGRQLSCWAIGRVALRVEARHF
DDSIDTA
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mRNA from alignment at P-wetherbeei_contig10109:61..2198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10109.1.1 ID=mRNA_P-wetherbeei_contig10109.1.1|Name=mRNA_P-wetherbeei_contig10109.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2138bp|location=Sequence derived from alignment at P-wetherbeei_contig10109:61..2198+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGACGCCGCCGAGCTGGTCGCCGGACTGTCCGAAGCGCGCGAGGCTGC
ATTGGCGTCACTCAGTGCCGAAACGGCAACGACATCGGCGGCAGCGGCAC
AAGCGCTGCTGCGGCTGACCGACGACCGCCTCCGTGGGCTCTGCCGCCTC
TTCGACGGCGACGGAGATGGCCGCATCGACTACCGCGAGTTTTCGCGCCG
CCTAGTTGTGTCAGGACAACGGCAGAGGCGCTTCTTGGCGACGACAACGG
CATCATCATCGGTGTCGACCGCGGCGGTAACCGTGGACTTGCGCCGGGAG
GCTGCGCGTCTGGGATTAATCGTTCCGGCGACGCGCGTGCTCCTAGGCCA
CGAGCGGGCAGTGACGGCGCTCGCGTATCTCCCGGTGTCCATGCTGTTGG
CATCGGCTGCCGCCGACGGGCGCGTTCGCCTGTGGGATCCGTGCGCCGCC
AACCATCGCCTCGTGCATCCGGGCACTGCTGGCCACGTTCGGCGCTGGCC
CGGCCACTACATCCGCCCGCTGGACCGATGGACGACTGCGGGAGCCCCCT
TTGGGTGCGTCCTCCAGCTCGACGTCGCCGCTGCGGCTGCCGCCGCGGCG
TTTGGCGCCAATTCTGGAGCGGGAGCAGGCGGCGTTTATGCAGCGCCGAC
GGCAGCGATAGCGGCGGCGAAAAGAGGCAGGATTTTGATCGGCGGCAGCG
GCAGCGCCGCTGCAGCGGCGGCAGTCGTCACGGCAATGGAGGCCGTCGTT
TCTGAGGCGCATCCGACAAGCGGGCGGATCCTATGCCCCGAGGAGGACGA
ACGACTCGCTGCCACCCTTGATGCGGGATCCGCCGCGGCATATCATGGCG
CTGGCATCGGAGGTGGCGGCCGCGACCGCAGCGGGTGCCGGGGCTTCTTG
TACCTGATGGACGACGGGGACCTCCTGGCCGTGTCGAGCGAGGCCTTTCA
CCGCCGCTACGTGCTGCTCGCCGACGCCGGCTTCTTTGAGGTAAGCTGGA
TGTTTAACCTTTGGCTCCTCTTACCAAAGGTAGATTTGCGACCCTCGGTC
CTCGAATGTGCTTCATTACTCCAGCATTAAGAACCTATTTGTTCTGCTGT
CATTTTTTTCCGTGTCACTTCTTAGTCTTCCGATGAGAGAGAGAAAGAAA
GAATATAGTTTGGAGAGCACAGAAAAGACACTTTCCATTTCGGCCTGTTC
CCGCGGCAATCCTTCCACACTTTGAAAAGTTTTAACACCGCCCAGCCCCC
TCTCGTCTTTCTCTCCTTTCTTCGTTGCCCCTTGCTTTGACGGCAACGAA
ATGGCAGGTGTCGGGGGCGGTCAGGCGGCCACCAACAGAGGCGATGGCGC
TGCGAGCAGCATTCAGGCAGCGAGCGCGTGTGCTCCGCGTGTTGTACGCT
GTTTCTACTGCGCACCACACGTTGAGGGCGCTCTGCCGGGCGGTACGGGC
TGTCAATGCGGCGGTGCAGGCGTCCGGGGCGCTGAATGGCTTTCCGGGCG
CGCGCTTCGTGGTTTTCTACAGAGTCGGGGACGGCCCCAGCAGCGACGTT
TCGGACCGCATCTTCCAAATTGCAGGCGGCCACGGTCGGAGCGGGCAGCC
GTCAGCGGCAGCGGGACTCAGCTTGCGGCCGGCTGGTGCCGGCATTGTTG
GAATCGTTTCGCGAGTTCACCCTAACGGCACAGTCGAAGTCGTTTGGGAC
GGAGCAACGCGCGCAACGACGATTGGTGCCGAAACCATCGCGCCGCTGTT
GGGTGGCGGTTCGGTGGCTCAGGCGTTGCCGCCGACATCGATAGCCGGCA
AAGCGGGAACGGGAGCCGTTGCAGCACACAACGCTCGCCTGACCACCGGG
ATGCGAATCCGGATGCGCTCAGCCGGAAGAAGCGGCTTCGTTGCCGCCGG
TCACAACAGTAGCAAGTCCGGCAGCTTTGCCAGAAGCTGCCCGACTAGTG
GCCGCGTTAGCGGGGGGGGCACTGACAGTGACGGTCTCGGTAGCGCCAAA
GTTGCCGGCGACGCTTCCGAGGTGCTGTGCATCGAGACGCGCGACATGGC
GGGCGGCCGGCAGCTCTCGTGCTGGGCGATTGGCCGCGTGGCGCTGCGCG
TGGAGGCCCGCCACTTCGACGACAGCATTGACACGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10109:61..2198+

>mRNA_P-wetherbeei_contig10109.1.1 ID=mRNA_P-wetherbeei_contig10109.1.1|Name=mRNA_P-wetherbeei_contig10109.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1821bp|location=Sequence derived from alignment at P-wetherbeei_contig10109:61..2198+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGACGCCGCCGAGCTGGTCGCCGGACTGTCCGAAGCGCGCGAGGCTGC
ATTGGCGTCACTCAGTGCCGAAACGGCAACGACATCGGCGGCAGCGGCAC
AAGCGCTGCTGCGGCTGACCGACGACCGCCTCCGTGGGCTCTGCCGCCTC
TTCGACGGCGACGGAGATGGCCGCATCGACTACCGCGAGTTTTCGCGCCG
CCTAGTTGTGTCAGGACAACGGCAGAGGCGCTTCTTGGCGACGACAACGG
CATCATCATCGGTGTCGACCGCGGCGGTAACCGTGGACTTGCGCCGGGAG
GCTGCGCGTCTGGGATTAATCGTTCCGGCGACGCGCGTGCTCCTAGGCCA
CGAGCGGGCAGTGACGGCGCTCGCGTATCTCCCGGTGTCCATGCTGTTGG
CATCGGCTGCCGCCGACGGGCGCGTTCGCCTGTGGGATCCGTGCGCCGCC
AACCATCGCCTCGTGCATCCGGGCACTGCTGGCCACGTTCGGCGCTGGCC
CGGCCACTACATCCGCCCGCTGGACCGATGGACGACTGCGGGAGCCCCCT
TTGGGTGCGTCCTCCAGCTCGACGTCGCCGCTGCGGCTGCCGCCGCGGCG
TTTGGCGCCAATTCTGGAGCGGGAGCAGGCGGCGTTTATGCAGCGCCGAC
GGCAGCGATAGCGGCGGCGAAAAGAGGCAGGATTTTGATCGGCGGCAGCG
GCAGCGCCGCTGCAGCGGCGGCAGTCGTCACGGCAATGGAGGCCGTCGTT
TCTGAGGCGCATCCGACAAGCGGGCGGATCCTATGCCCCGAGGAGGACGA
ACGACTCGCTGCCACCCTTGATGCGGGATCCGCCGCGGCATATCATGGCG
CTGGCATCGGAGGTGGCGGCCGCGACCGCAGCGGGTGCCGGGGCTTCTTG
TACCTGATGGACGACGGGGACCTCCTGGCCGTGTCGAGCGAGGCCTTTCA
CCGCCGCTACGTGCTGCTCGCCGACGCCGGCTTCTTTGAGGTGTCGGGGG
CGGTCAGGCGGCCACCAACAGAGGCGATGGCGCTGCGAGCAGCATTCAGG
CAGCGAGCGCGTGTGCTCCGCGTGTTGTACGCTGTTTCTACTGCGCACCA
CACGTTGAGGGCGCTCTGCCGGGCGGTACGGGCTGTCAATGCGGCGGTGC
AGGCGTCCGGGGCGCTGAATGGCTTTCCGGGCGCGCGCTTCGTGGTTTTC
TACAGAGTCGGGGACGGCCCCAGCAGCGACGTTTCGGACCGCATCTTCCA
AATTGCAGGCGGCCACGGTCGGAGCGGGCAGCCGTCAGCGGCAGCGGGAC
TCAGCTTGCGGCCGGCTGGTGCCGGCATTGTTGGAATCGTTTCGCGAGTT
CACCCTAACGGCACAGTCGAAGTCGTTTGGGACGGAGCAACGCGCGCAAC
GACGATTGGTGCCGAAACCATCGCGCCGCTGTTGGGTGGCGGTTCGGTGG
CTCAGGCGTTGCCGCCGACATCGATAGCCGGCAAAGCGGGAACGGGAGCC
GTTGCAGCACACAACGCTCGCCTGACCACCGGGATGCGAATCCGGATGCG
CTCAGCCGGAAGAAGCGGCTTCGTTGCCGCCGGTCACAACAGTAGCAAGT
CCGGCAGCTTTGCCAGAAGCTGCCCGACTAGTGGCCGCGTTAGCGGGGGG
GGCACTGACAGTGACGGTCTCGGTAGCGCCAAAGTTGCCGGCGACGCTTC
CGAGGTGCTGTGCATCGAGACGCGCGACATGGCGGGCGGCCGGCAGCTCT
CGTGCTGGGCGATTGGCCGCGTGGCGCTGCGCGTGGAGGCCCGCCACTTC
GACGACAGCATTGACACGGCC
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