mRNA_P-wetherbeei_contig10108.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10108.3.1
Unique NamemRNA_P-wetherbeei_contig10108.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10108.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10108contigP-wetherbeei_contig10108:919..1972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size779
Hectar predicted targeting categorychloroplast
Exons2
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.9586775-CDS-P-wetherbeei_contig10108:918..14371683185854.9586775-CDS-P-wetherbeei_contig10108:918..1437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10108 919..1437 +
1683185854.9690602-CDS-P-wetherbeei_contig10108:1714..19721683185854.9690602-CDS-P-wetherbeei_contig10108:1714..1972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10108 1715..1972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10108.3.1prot_P-wetherbeei_contig10108.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10108 919..1972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10108.3.1

>prot_P-wetherbeei_contig10108.3.1 ID=prot_P-wetherbeei_contig10108.3.1|Name=mRNA_P-wetherbeei_contig10108.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
NSLLPNAHTRAKRLGIMRVLALAVALLPSTGAFAPLGSSSMHVRNDGRAQ
NGVESVRYTAMIDAPAAATARATTAPTDQLAALLSGAFEETVPMSAHNAI
IEATERAMTEQVGLMAAAAVAALNEIRTELDAAILLRNADHEGKASLEAE
LKEMHLLVDCYAAAVDRVVFQMKAQKEEATATAASASARIAAVCDDVASL
QQQLVASRAAAAAAEAQAAQSRVAQLEAEQRAGAAVATAAADVAAATERA
GRAEAAEAH
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mRNA from alignment at P-wetherbeei_contig10108:919..1972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10108.3.1 ID=mRNA_P-wetherbeei_contig10108.3.1|Name=mRNA_P-wetherbeei_contig10108.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1054bp|location=Sequence derived from alignment at P-wetherbeei_contig10108:919..1972+ (Phaeothamnion wetherbeei SAG_119_79)
AATTCGTTGCTCCCAAACGCGCACACCAGGGCAAAGAGGCTTGGCATCAT
GCGCGTTCTGGCATTGGCAGTAGCCCTGCTGCCCAGCACAGGCGCATTCG
CGCCTCTTGGGTCATCTTCGATGCATGTTAGGAATGATGGCCGAGCTCAA
AACGGAGTAGAAAGCGTTCGGTATACCGCGATGATCGATGCACCAGCAGC
TGCGACTGCACGTGCCACCACCGCCCCGACGGACCAATTGGCAGCCCTGC
TATCTGGCGCATTCGAAGAGACTGTTCCTATGAGCGCACACAATGCCATC
ATCGAGGCCACAGAACGCGCAATGACGGAACAGGTGGGCCTCATGGCCGC
CGCCGCCGTGGCTGCGCTGAACGAGATCCGCACAGAGCTCGACGCTGCAA
TCCTTCTGCGCAACGCCGACCATGAAGGCAAAGCTTCTTTGGAAGCAGAG
CTGAAGGAAATGCACCTGCTGGTGGACTGCTATGCCGCCGCTGTGGACAG
AGTCGTCTTTCAGATGAAGGTCAGTGCAAAGCAATTCTTGAGCGGGAGCC
GCAATATCTCTGTTAGAGGAGCATGCTGCTCGCTCTGGGCAAAGCCCTCG
CCTAAACGCTGCCCAAGAATAGCTGAAAATAGCAGCATTTAGCTTATCCC
TAGCAGTTGTCGTATATGATTCCGCCCGTTGAAACTTATCGTGCATTGCA
ACCTCCGAGCAAGAAGTGTACACATTCTCCCACCTGACCGCTGTTCTACG
ACTGATTCCTTGCGCACCTGATTTCCTCTTTGCTTAAATACCTCAGGCGC
AAAAGGAGGAGGCCACGGCGACAGCTGCCTCGGCCTCGGCGCGCATCGCT
GCTGTCTGCGACGATGTCGCGTCGCTGCAGCAGCAGCTGGTGGCCAGCCG
GGCTGCCGCCGCCGCCGCAGAGGCGCAGGCGGCCCAGTCGCGCGTTGCCC
AACTCGAGGCGGAGCAGCGCGCCGGCGCCGCCGTCGCCACCGCGGCCGCC
GACGTGGCGGCGGCGACGGAACGGGCGGGGCGCGCCGAGGCGGCAGAAGC
GCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10108:919..1972+

>mRNA_P-wetherbeei_contig10108.3.1 ID=mRNA_P-wetherbeei_contig10108.3.1|Name=mRNA_P-wetherbeei_contig10108.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig10108:919..1972+ (Phaeothamnion wetherbeei SAG_119_79)
AATTCGTTGCTCCCAAACGCGCACACCAGGGCAAAGAGGCTTGGCATCAT
GCGCGTTCTGGCATTGGCAGTAGCCCTGCTGCCCAGCACAGGCGCATTCG
CGCCTCTTGGGTCATCTTCGATGCATGTTAGGAATGATGGCCGAGCTCAA
AACGGAGTAGAAAGCGTTCGGTATACCGCGATGATCGATGCACCAGCAGC
TGCGACTGCACGTGCCACCACCGCCCCGACGGACCAATTGGCAGCCCTGC
TATCTGGCGCATTCGAAGAGACTGTTCCTATGAGCGCACACAATGCCATC
ATCGAGGCCACAGAACGCGCAATGACGGAACAGGTGGGCCTCATGGCCGC
CGCCGCCGTGGCTGCGCTGAACGAGATCCGCACAGAGCTCGACGCTGCAA
TCCTTCTGCGCAACGCCGACCATGAAGGCAAAGCTTCTTTGGAAGCAGAG
CTGAAGGAAATGCACCTGCTGGTGGACTGCTATGCCGCCGCTGTGGACAG
AGTCGTCTTTCAGATGAAGGCGCAAAAGGAGGAGGCCACGGCGACAGCTG
CCTCGGCCTCGGCGCGCATCGCTGCTGTCTGCGACGATGTCGCGTCGCTG
CAGCAGCAGCTGGTGGCCAGCCGGGCTGCCGCCGCCGCCGCAGAGGCGCA
GGCGGCCCAGTCGCGCGTTGCCCAACTCGAGGCGGAGCAGCGCGCCGGCG
CCGCCGTCGCCACCGCGGCCGCCGACGTGGCGGCGGCGACGGAACGGGCG
GGGCGCGCCGAGGCGGCAGAAGCGCAC
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