mRNA_P-wetherbeei_contig10108.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10108.2.1
Unique NamemRNA_P-wetherbeei_contig10108.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10108.2.1 vs. uniprot
Match: A0A388L4C3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L4C3_CHABU)

HSP 1 Score: 58.9 bits (141), Expect = 9.540e-7
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:  190 AKSSLGRRDAIRTAISSFGFGLV------------ALSFGLSSREAHATMPSLTVNQVKHILEGDFTDKKYLLTGDLTRDIYNPDCRFTDPTTV 435
            A +S  RR  +  A+S  G G+V            AL+  L +  A      L + ++K I+E D  + +YLLTGDLT+DIY  DCRF DPT V
Sbjct:  159 ATTSFDRRSLMAMAVSG-GLGVVLGATLDAMTTGTALATPLETPSASGKRTHLPLEEIKSIIEHDMKEGRYLLTGDLTKDIYADDCRFEDPTNV 251
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BLAST of mRNA_P-wetherbeei_contig10108.2.1 vs. uniprot
Match: A0A388L4B8_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L4B8_CHABU)

HSP 1 Score: 58.5 bits (140), Expect = 1.450e-6
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  250 GLVALSFGLSSREAHATMPSLTVNQVKHILEGDFTDKKYLLTGDLTRDIYNPDCRFTDPTTVSL 441
            G  AL+  L +   +     L + ++K I+E D  + KYLLTGDLT+++Y  DCRF DPT V++
Sbjct:  255 GGTALATPLETPSGNGKRKHLPLEEIKSIIECDIKEGKYLLTGDLTKEVYTDDCRFEDPTNVTI 318
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BLAST of mRNA_P-wetherbeei_contig10108.2.1 vs. uniprot
Match: A0A7S0X7G1_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X7G1_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.170e-5
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:  265 SFGLSSREAHATMPSLTVNQVKHILEGDFTDKKYLLTGDLTRDIYNPDCRFTDPT 429
            S G   + A      LT+ Q+K +LE D  D++Y +TG+LTR+I+  +CRFTDPT
Sbjct:   80 SLGGVKKVADNKTRDLTMEQIKDVLEKDLRDRQYFVTGNLTREIFADNCRFTDPT 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10108.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A388L4C3_CHABU9.540e-739.36Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388L4B8_CHABU1.450e-642.19Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7S0X7G1_9CHLO2.170e-545.45Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10108contigP-wetherbeei_contig10108:249..892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog88036.EFJ22161
PFAMsDUF2358
Model size644
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorychloroplast
Exons1
Evalue2.61e-08
EggNOG OGs2D8NW@1|root,2S5BV@2759|Eukaryota,37WDP@33090|Viridiplantae,3GPVS@35493|Streptophyta
DescriptionUncharacterized conserved protein (DUF2358)
Cds size414
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.9940255-UTR-P-wetherbeei_contig10108:248..4121683185854.9940255-UTR-P-wetherbeei_contig10108:248..412Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10108 249..412 -
1683185855.0129962-UTR-P-wetherbeei_contig10108:826..8921683185855.0129962-UTR-P-wetherbeei_contig10108:826..892Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10108 827..892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.0043511-CDS-P-wetherbeei_contig10108:412..8261683185855.0043511-CDS-P-wetherbeei_contig10108:412..826Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10108 413..826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10108.2.1prot_P-wetherbeei_contig10108.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10108 413..826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10108.2.1

>prot_P-wetherbeei_contig10108.2.1 ID=prot_P-wetherbeei_contig10108.2.1|Name=mRNA_P-wetherbeei_contig10108.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MLPRFLLLAACVAFAQGFVVTTMRVDNALRRREAVQTAARFAKSSLGRRD
AIRTAISSFGFGLVALSFGLSSREAHATMPSLTVNQVKHILEGDFTDKKY
LLTGDLTRDIYNPDCRFTDPTTVSLFSYFDIEHAHRI*
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mRNA from alignment at P-wetherbeei_contig10108:249..892-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10108.2.1 ID=mRNA_P-wetherbeei_contig10108.2.1|Name=mRNA_P-wetherbeei_contig10108.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=644bp|location=Sequence derived from alignment at P-wetherbeei_contig10108:249..892- (Phaeothamnion wetherbeei SAG_119_79)
GTTGGAACAGGTGAGAAGGAGAGACGACGCAGCCTAGTCGCCCACTAGCT
CTGTGCTACCAGCAGCATGCTTCCGCGCTTCCTGCTGCTCGCGGCATGCG
TCGCTTTTGCTCAAGGCTTCGTTGTGACCACGATGCGAGTAGACAACGCG
CTCCGGCGGCGGGAAGCTGTCCAAACAGCGGCTCGCTTTGCGAAAAGCTC
GCTTGGGCGGCGAGATGCCATCCGAACCGCAATTAGTAGTTTCGGCTTTG
GGCTCGTTGCTCTCTCCTTTGGTCTCTCCTCTCGCGAGGCGCACGCGACG
ATGCCTTCTTTGACCGTAAACCAAGTCAAGCACATCTTGGAAGGGGATTT
TACTGACAAGAAGTACCTCCTCACGGGCGACCTGACTAGAGACATCTATA
ACCCCGACTGCCGCTTTACGGATCCGACGACGGTGAGCTTATTCTCCTAC
TTCGATATTGAACATGCGCACAGAATCTAGTTGTAAATTACGTACCGAGT
TTGGAAGACGGAGTTGTTCGTACTCCTTGCTTCCCTTTATTTTCACCTCT
CGTCAAGGACGTCCGCGGTGTGAAGCGCTACACAGACGCTCTGAAGATCC
TTTTCGACCCCGCGCACTCCAAGCTGGACCTCCTTTCCATTAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10108:249..892-

>mRNA_P-wetherbeei_contig10108.2.1 ID=mRNA_P-wetherbeei_contig10108.2.1|Name=mRNA_P-wetherbeei_contig10108.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig10108:249..892- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCCGCGCTTCCTGCTGCTCGCGGCATGCGTCGCTTTTGCTCAAGG
CTTCGTTGTGACCACGATGCGAGTAGACAACGCGCTCCGGCGGCGGGAAG
CTGTCCAAACAGCGGCTCGCTTTGCGAAAAGCTCGCTTGGGCGGCGAGAT
GCCATCCGAACCGCAATTAGTAGTTTCGGCTTTGGGCTCGTTGCTCTCTC
CTTTGGTCTCTCCTCTCGCGAGGCGCACGCGACGATGCCTTCTTTGACCG
TAAACCAAGTCAAGCACATCTTGGAAGGGGATTTTACTGACAAGAAGTAC
CTCCTCACGGGCGACCTGACTAGAGACATCTATAACCCCGACTGCCGCTT
TACGGATCCGACGACGGTGAGCTTATTCTCCTACTTCGATATTGAACATG
CGCACAGAATCTAG
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