mRNA_P-wetherbeei_contig1010.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1010.1.1
Unique NamemRNA_P-wetherbeei_contig1010.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1010contigP-wetherbeei_contig1010:2137..4058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size922
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001730.1
Cds size705
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1010.1.1prot_P-wetherbeei_contig1010.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1010 2354..4058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.59092-UTR-P-wetherbeei_contig1010:2136..23531683185854.59092-UTR-P-wetherbeei_contig1010:2136..2353Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1010 2137..2353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.60069-CDS-P-wetherbeei_contig1010:2353..23771683185854.60069-CDS-P-wetherbeei_contig1010:2353..2377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1010 2354..2377 +
1683185854.607759-CDS-P-wetherbeei_contig1010:2512..26711683185854.607759-CDS-P-wetherbeei_contig1010:2512..2671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1010 2513..2671 +
1683185854.6147692-CDS-P-wetherbeei_contig1010:2682..27211683185854.6147692-CDS-P-wetherbeei_contig1010:2682..2721Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1010 2683..2721 +
1683185854.6219358-CDS-P-wetherbeei_contig1010:3130..33551683185854.6219358-CDS-P-wetherbeei_contig1010:3130..3355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1010 3131..3355 +
1683185854.6291249-CDS-P-wetherbeei_contig1010:3800..40581683185854.6291249-CDS-P-wetherbeei_contig1010:3800..4058Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1010 3801..4058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1010.1.1

>prot_P-wetherbeei_contig1010.1.1 ID=prot_P-wetherbeei_contig1010.1.1|Name=mRNA_P-wetherbeei_contig1010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
MVFLSETTFRRTRRRMESSTPRRSPSIPPASASPCRWSLASSCFSLASAS
AAGAKGGCDWSECEEDVAMGKYAERPNFDLLDKTPRHRKILWIFSVLFML
AYMACAGAAYRAAADSQETVDSAFTGTVVFLENVEDAICAQDGNSTCTEG
SLGRFIEDAADYGNQVFDEVVAAAEFITSDLIDKASVFNETVELMSNALD
AEKAALDAFTNATEAASASLATVNGLPGSSGLTVV
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mRNA from alignment at P-wetherbeei_contig1010:2137..4058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1010.1.1 ID=mRNA_P-wetherbeei_contig1010.1.1|Name=mRNA_P-wetherbeei_contig1010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1922bp|location=Sequence derived from alignment at P-wetherbeei_contig1010:2137..4058+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGGATAACGACCAGGAAAGGTGCCATCTAGCAAGACTTTCGTAAGAAG
CGGGCGGATCTGGACGCATATCGCGTCTCTTCTCTCTTCTCATCTAAGGG
TCTAAAAGATGACAGCAAGAAGTCAACTACGCTCGTTTACAGCAACTTCG
CTAGTTGCTGCAACTCAAGCAATCAGCTTCAGCCTGTCAGACTTGAAAGA
CTTGACATGGGCCGAACATGGTATTCCTGTCAGAAACAACGGTGAGTTTG
TCGCGTTTTTTGACAGAGTGCCTCGAAAGCCTGATTGTTCAACCGCAGAT
GACGACAATCACGAGCACGAGATCACACTTTGCTGCACTATTCGTTTTCC
GTCCGCACTCCCATCTCTCATTACAGTTTCGGCGTACACGGAGGAGGATG
GAGTCGTCTACGCCAAGGAGGTCGCCGTCCATTCCGCCGGCTTCGGCATC
GCCCTGTCGCTGGTCCTTGGCCTCATCATGTTTTTCTCTTGCATCAGCTT
CTGCTGCCGGTGCAAAAGGCGGATGCGATTGGAGCGCATGCTTGAGGAGT
GTGAGGAGGACGTGGCCATGGGGAAATATGCAGAAGTAAGAAGGAATGGC
CGCATTTTTCTCCTCCCTTTCACCAAGTAGAATACTTATGTAGTGAGCTG
CCGTCACAGAAGTAGGCGGTTGGCTTTGCACCCTGTTGAAAGCCTACTCA
GTACCTGTCTTGCTAAATAACTGCCGATGTAAACCGATGACTCCGTCCGA
TGCATTGGCGAAAAGGATTACTGAAATTCTTATAAAGCATTCGGAAGGTC
TTCTCTGGCGTATGAAATTGCAAGACCTCACTGCCCCCGCGCGCCTCTGA
AACCGCCCCGGAACTCTTGTCACGAAGACTTCCTCTATTCTTTCACCGGA
TAGACCGCACGTCCCATCATCGCTCACTCCGCTCGTCACCTTCCCTCACG
CGCCTCGTCCGATCCCATCCCGTCCGACCGCGCGGGACCGCCAGAGACCA
AACTTCGACCTTCTAGACAAGACACCGCGGCACCGCAAGATTCTGTGGAT
CTTCTCCGTCCTCTTCATGCTGGCGTACATGGCGTGCGCCGGCGCGGCCT
ACCGGGCGGCGGCGGACTCGCAGGAGACGGTCGACTCAGCCTTTACGGGG
ACGGTGGTTTTTCTGGAGAACGTCGAAGACGCCATCTGCGCGCAGGATGG
CAACTCAACCTGCACCGAGGTACAGAAAGTAAAGTGAAGTGGATGCACCT
TTTGGAATTTGCTGTCTTTTCTCGTCGTGCGCGGCTGGTGGCGGTATCAC
GGTGAGGCGAGATAAGAAGCGGTGGCGGAGCGCGGCTCGGAGGGGGAAGG
CAAGATGGCTAGCTGCAACAGTGCTTGGAGACATCTAAAGAAGCAGCGGC
AGAGCGATGCTTTCTTCTGGACGAAGGAAAGGTGTAGACGCCGATGGGGA
TTCCCACCGGCAGCCATAGTGAGTCATTCAATGCGTGGTCGAAGCCGATC
GCCAGCATGGGCGCCCTTCACAGGCATTTTGACAGCTCGGGAAAGTGCAG
GAGGCGCAACGATCTCAGCATTCCTTACTGTTTTCTTGTGCCTGCTTGCC
TGCCGCCGCGCCCACACGCCTGCCCTTTCACTCCTTCTGTCGTCCCCTCC
CGAAACTGCTGCAGGGATCGCTCGGAAGGTTCATCGAGGACGCCGCCGAC
TACGGCAACCAGGTCTTCGATGAAGTCGTCGCCGCCGCTGAATTCATCAC
CTCCGACCTGATCGATAAGGCCTCCGTCTTCAACGAGACGGTCGAACTCA
TGTCCAATGCGCTGGACGCCGAGAAGGCGGCGCTGGATGCATTCACCAAC
GCGACGGAGGCGGCATCGGCATCGCTGGCGACCGTCAACGGCTTGCCCGG
CAGCAGCGGCCTGACTGTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1010:2137..4058+

>mRNA_P-wetherbeei_contig1010.1.1 ID=mRNA_P-wetherbeei_contig1010.1.1|Name=mRNA_P-wetherbeei_contig1010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig1010:2137..4058+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTATTCCTGTCAGAAACAACGTTTCGGCGTACACGGAGGAGGATGGA
GTCGTCTACGCCAAGGAGGTCGCCGTCCATTCCGCCGGCTTCGGCATCGC
CCTGTCGCTGGTCCTTGGCCTCATCATGTTTTTCTCTTGCATCAGCTTCT
GCTGCCGGTGCAAAAGGCGGATGCGATTGGAGCGAGTGTGAGGAGGACGT
GGCCATGGGGAAATATGCAGAAAGACCAAACTTCGACCTTCTAGACAAGA
CACCGCGGCACCGCAAGATTCTGTGGATCTTCTCCGTCCTCTTCATGCTG
GCGTACATGGCGTGCGCCGGCGCGGCCTACCGGGCGGCGGCGGACTCGCA
GGAGACGGTCGACTCAGCCTTTACGGGGACGGTGGTTTTTCTGGAGAACG
TCGAAGACGCCATCTGCGCGCAGGATGGCAACTCAACCTGCACCGAGGGA
TCGCTCGGAAGGTTCATCGAGGACGCCGCCGACTACGGCAACCAGGTCTT
CGATGAAGTCGTCGCCGCCGCTGAATTCATCACCTCCGACCTGATCGATA
AGGCCTCCGTCTTCAACGAGACGGTCGAACTCATGTCCAATGCGCTGGAC
GCCGAGAAGGCGGCGCTGGATGCATTCACCAACGCGACGGAGGCGGCATC
GGCATCGCTGGCGACCGTCAACGGCTTGCCCGGCAGCAGCGGCCTGACTG
TGGTG
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