mRNA_P-wetherbeei_contig101.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig101.9.1
Unique NamemRNA_P-wetherbeei_contig101.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig101.9.1 vs. uniprot
Match: UPI000E6F69F6 (uncharacterized protein LOC113280940 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F69F6)

HSP 1 Score: 50.1 bits (118), Expect = 6.320e-5
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 2 
Query:  200 KRRVDLEGKTCSCIFWDQVGIPCRHAIA 283
            K RVDL  K+CSC+FW +VGIPC HA+A
Sbjct: 1080 KYRVDLSDKSCSCLFWQKVGIPCSHALA 1107
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BLAST of mRNA_P-wetherbeei_contig101.9.1 vs. uniprot
Match: A0A3Q0EIE1_VIGRR (uncharacterized protein LOC111240565 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A3Q0EIE1_VIGRR)

HSP 1 Score: 49.7 bits (117), Expect = 7.000e-5
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:  209 VDLEGKTCSCIFWDQVGIPCRHAIAA 286
            VDL   TC+C FWD VGIPCRHA+AA
Sbjct:   68 VDLSNHTCTCYFWDLVGIPCRHAVAA 93
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BLAST of mRNA_P-wetherbeei_contig101.9.1 vs. uniprot
Match: UPI001E6900C8 (uncharacterized protein LOC123886143 n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E6900C8)

HSP 1 Score: 49.7 bits (117), Expect = 8.290e-5
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 2 
Query:  206 RVDLEGKTCSCIFWDQVGIPCRHAIAA 286
            +VD+  KTCSC FW+ +GIPCRHAIAA
Sbjct:  314 KVDIAKKTCSCNFWELIGIPCRHAIAA 340
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig101.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI000E6F69F66.320e-567.86uncharacterized protein LOC113280940 n=1 Tax=Papav... [more]
A0A3Q0EIE1_VIGRR7.000e-573.08uncharacterized protein LOC111240565 n=1 Tax=Vigna... [more]
UPI001E6900C88.290e-570.37uncharacterized protein LOC123886143 n=1 Tax=Trifo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig101contigP-wetherbeei_contig101:9216..9909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size288
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.3854613-CDS-P-wetherbeei_contig101:9215..93561683185854.3854613-CDS-P-wetherbeei_contig101:9215..9356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig101 9216..9356 +
1683185854.393179-CDS-P-wetherbeei_contig101:9733..97921683185854.393179-CDS-P-wetherbeei_contig101:9733..9792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig101 9734..9792 +
1683185854.4005597-CDS-P-wetherbeei_contig101:9821..99091683185854.4005597-CDS-P-wetherbeei_contig101:9821..9909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig101 9822..9909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig101.9.1prot_P-wetherbeei_contig101.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig101 9216..9909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig101.9.1

>prot_P-wetherbeei_contig101.9.1 ID=prot_P-wetherbeei_contig101.9.1|Name=mRNA_P-wetherbeei_contig101.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MAPLSCLKEVLEMEMRRYHERAIEVDKWRRNGFVITMRANKLYAAEEARS
RAYSARPSSKSIYFVSQAPGRPRRQDLLLHLLGPGRHPMPPCNCCK
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mRNA from alignment at P-wetherbeei_contig101:9216..9909+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig101.9.1 ID=mRNA_P-wetherbeei_contig101.9.1|Name=mRNA_P-wetherbeei_contig101.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=694bp|location=Sequence derived from alignment at P-wetherbeei_contig101:9216..9909+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCTCTGTCATGCTTGAAGGAGGTGCTTGAGATGGAGATGCGGCG
GTACCATGAGCGCGCGATAGAGGTTGACAAGTGGCGCCGCAATGGCTTTG
TCATCACAATGAGGGCCAACAAGTTGTATGCAGCCGAAGAGGTGCGTGTT
CTGCTTTGGCTACAGTAAGGCGTTTCCCTAGACCATATGGCTGGTGCCCT
CGAGATTTCTTTGCGTCGGCCTGATGCTTTCTCGTTGGATCTTGTTCCTG
TTTTCAAATTCACATTCCCGAACCGGGCAGCCTGTAGTATCCTGAGTCTT
ACCAGACCACGGTGGTCACTTCGAAAAGAGGAAGGGAAATTGTGTTCATC
AGAAACCGGCCATTATGAGACACGTTTACAACCTCCGCCTCAGTCCTTCT
TGCTTTTCTTTCTGACTTACTTGTTTGTTGTCTTAACCTTAGTTGGGCTT
ATTTTTGTCATTTCTGACATCTTTCCTTCTGTTTCCTTCTTCTTTTGCCT
GCCACCGGCGCTCGACAGGCCCGCTCAAGGGCATACAGTGCAAGGCCGTC
CTCTAAGAGCATCTACTTCGTGTCGCAGCGTGGGATCCAGGCAGTGGACC
CCCGAGAGCGCCGGGTCGACCTCGAAGGCAAGACCTGCTCCTGCATCTTT
TGGGACCAGGTCGGCATCCCATGCCGCCATGCAATTGCTGCAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig101:9216..9909+

>mRNA_P-wetherbeei_contig101.9.1 ID=mRNA_P-wetherbeei_contig101.9.1|Name=mRNA_P-wetherbeei_contig101.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig101:9216..9909+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCTCTGTCATGCTTGAAGGAGGTGCTTGAGATGGAGATGCGGCG
GTACCATGAGCGCGCGATAGAGGTTGACAAGTGGCGCCGCAATGGCTTTG
TCATCACAATGAGGGCCAACAAGTTGTATGCAGCCGAAGAGGCCCGCTCA
AGGGCATACAGTGCAAGGCCGTCCTCTAAGAGCATCTACTTCGTGTCGCA
AGCGCCGGGTCGACCTCGAAGGCAAGACCTGCTCCTGCATCTTTTGGGAC
CAGGTCGGCATCCCATGCCGCCATGCAATTGCTGCAAA
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