mRNA_P-wetherbeei_contig101.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig101.4.1
Unique NamemRNA_P-wetherbeei_contig101.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig101.4.1 vs. uniprot
Match: A0A6A4Z6F3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z6F3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.410e-7
Identity = 43/161 (26.71%), Postives = 76/161 (47.20%), Query Frame = 2 
Query:  503 RQITVTKPGGHNKRMECTGPTCPVFLTLGCGKKNS-ETSSTMWRVRSYCLGHVNCTSVAAPSIKQLQMLQAPVTATLSDFAVSS---KTMVNSLYGTTGLKITNRQALRARSAITKANEGGYAEGFMDMKGWLEEVADANPTSHTAFKVNSAGRFDAALIV 973
            + + V   GG+N+ + C+  TCP  +T     KN  + +   W + S    HV+CTS+A  + +Q+  L + V+A  ++  V +   +T V +L+    L   +R   RA+     A +      +  +  +LE +   NP S +  + +S GRF    IV
Sbjct:   44 KHVVVRTRGGNNRTVVCSSSTCPFQVTAYKTSKNPPDAAQPPWYISSVAPNHVDCTSIAMLTARQIAQLPSVVSAVQANRRVEASFLQTQVQALHAV-NLNGRSRTVYRAKQHACAALDNVELSSYKWLSSFLETLVSLNPGSASKCESDSEGRFQRCAIV 203
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BLAST of mRNA_P-wetherbeei_contig101.4.1 vs. uniprot
Match: A0A3R6X9F5_9STRA (SWIM-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6X9F5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.930e-7
Identity = 43/161 (26.71%), Postives = 76/161 (47.20%), Query Frame = 2 
Query:  503 RQITVTKPGGHNKRMECTGPTCPVFLTLGCGKKNS-ETSSTMWRVRSYCLGHVNCTSVAAPSIKQLQMLQAPVTATLSDFAVSS---KTMVNSLYGTTGLKITNRQALRARSAITKANEGGYAEGFMDMKGWLEEVADANPTSHTAFKVNSAGRFDAALIV 973
            + + V   GG+N+ + C+  TCP  +T     KN  + +   W + S    HV+CTS+A  + +Q+  L + V+A  ++  V +   +T V +L+    L   +R   RA+     A +      +  +  +LE +   NP S +  + +S GRF    IV
Sbjct:   44 KHVVVRTRGGNNRTVVCSSSTCPFQVTAYKTSKNPPDAAQPPWYISSVAPNHVDCTSIAMLTARQIAQLPSVVSAVQANRRVEASFLQTQVQALHAV-NLNGRSRTVYRAKQHACAALDNVELSSYKWLSSFLETLVSLNPGSASKCESDSEGRFQRCAIV 203
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig101.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A4Z6F3_9STRA3.410e-726.71Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3R6X9F5_9STRA4.930e-726.71SWIM-type domain-containing protein n=2 Tax=Aphano... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig101contigP-wetherbeei_contig101:7099..8359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T013633
Model size1261
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.2e-05
EggNOG OGs2D5T0@1|root,2SZJ1@2759|Eukaryota,1MHKI@121069|Pythiales
DescriptionSource PGD
Cds size960
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.4812489-UTR-P-wetherbeei_contig101:7098..71471683185854.4812489-UTR-P-wetherbeei_contig101:7098..7147Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig101 7099..7147 +
1683185854.4960876-UTR-P-wetherbeei_contig101:8107..83591683185854.4960876-UTR-P-wetherbeei_contig101:8107..8359Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig101 8108..8359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.4890175-CDS-P-wetherbeei_contig101:7147..81071683185854.4890175-CDS-P-wetherbeei_contig101:7147..8107Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig101 7148..8107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig101.4.1prot_P-wetherbeei_contig101.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig101 7148..8107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig101.4.1

>prot_P-wetherbeei_contig101.4.1 ID=prot_P-wetherbeei_contig101.4.1|Name=mRNA_P-wetherbeei_contig101.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
MSSAPATSAPAPAPEGSGAASRCHLEEIGGHEQQVVQNPFTLRQGGGGGA
ARGLQAIQERGPPPASQSLAHYGPQARFLVPSSPSRPLSAPSTADMYNRE
AAFGHVGLDVHVENQDTDSNIFDPDIVDRQWPDGAEAVAAIKVWGLGNTP
PRQITVTKPGGHNKRMECTGPTCPVFLTLGCGKKNSETSSTMWRVRSYCL
GHVNCTSVAAPSIKQLQMLQAPVTATLSDFAVSSKTMVNSLYGTTGLKIT
NRQALRARSAITKANEGGYAEGFMDMKGWLEEVADANPTSHTAFKVNSAG
RFDAALIVLPRAAEVRFSL*
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mRNA from alignment at P-wetherbeei_contig101:7099..8359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig101.4.1 ID=mRNA_P-wetherbeei_contig101.4.1|Name=mRNA_P-wetherbeei_contig101.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1261bp|location=Sequence derived from alignment at P-wetherbeei_contig101:7099..8359+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACCGGGAAAGCTCCAACCAACGCCGGAAAACCCAACGGACGCCATAA
TGTCGTCCGCACCAGCGACGTCGGCCCCGGCACCCGCGCCTGAGGGCTCT
GGAGCTGCTTCTCGCTGCCATTTGGAAGAGATTGGAGGCCATGAACAGCA
GGTGGTGCAGAACCCGTTCACGCTTCGGCAAGGGGGAGGTGGCGGCGCGG
CGCGGGGGTTGCAGGCAATCCAGGAGCGCGGCCCTCCTCCAGCATCTCAG
AGTCTCGCCCACTACGGGCCACAGGCGCGCTTTCTGGTACCGAGCTCGCC
GAGCAGGCCTCTCAGCGCTCCTTCGACAGCTGACATGTACAATCGAGAGG
CAGCGTTTGGCCATGTAGGGCTTGATGTCCACGTGGAAAACCAAGATACC
GACAGCAACATCTTTGACCCCGACATCGTCGACCGTCAGTGGCCGGACGG
AGCCGAGGCGGTCGCAGCTATAAAGGTGTGGGGCCTCGGGAATACGCCGC
CTCGGCAGATCACTGTCACCAAGCCTGGCGGACACAACAAGAGAATGGAG
TGCACCGGCCCCACCTGCCCCGTCTTCTTAACGTTGGGTTGCGGCAAGAA
GAACTCGGAGACGTCGTCCACCATGTGGCGCGTACGCTCGTACTGCCTCG
GCCACGTCAACTGCACCAGCGTGGCGGCGCCTTCCATCAAGCAGCTCCAA
ATGCTCCAGGCGCCGGTGACAGCAACACTTTCTGACTTCGCCGTTTCGAG
CAAGACGATGGTGAACAGCCTCTACGGGACGACCGGCCTGAAGATCACCA
ACCGCCAGGCGCTGCGGGCGCGCAGCGCCATCACAAAGGCGAACGAAGGC
GGGTACGCAGAAGGCTTCATGGACATGAAAGGATGGCTCGAGGAGGTGGC
TGATGCGAACCCTACCAGCCACACGGCGTTCAAGGTCAACTCGGCGGGTC
GCTTCGACGCCGCCCTTATCGTTCTCCCTCGGGCCGCTGAGGTGCGTTTC
TCTCTTTGAGGCGGGAGCTTGGTTCCCCCCTTTTGTTCCTTTTTCGGGAG
TTTTTCTCGCTGTTGCCCCCTACCTTCTTCCTTCTCAGCATTTTGGTGTC
TTAGTACCTGCTTCGCGCATCTCACCAGTGAATCTGTCCTTTTTGGTGAG
GATTTTGGGAGGTTGGGAGTCTCTTTTAAAGCCAGGGTTTTCGCCTTTGT
CTCGCTTTCCTTTCTTTGTTCTGCCTGTTACGAAGGTGCTGGAGAACGTC
GGGGTTCCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig101:7099..8359+

>mRNA_P-wetherbeei_contig101.4.1 ID=mRNA_P-wetherbeei_contig101.4.1|Name=mRNA_P-wetherbeei_contig101.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig101:7099..8359+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCCGCACCAGCGACGTCGGCCCCGGCACCCGCGCCTGAGGGCTC
TGGAGCTGCTTCTCGCTGCCATTTGGAAGAGATTGGAGGCCATGAACAGC
AGGTGGTGCAGAACCCGTTCACGCTTCGGCAAGGGGGAGGTGGCGGCGCG
GCGCGGGGGTTGCAGGCAATCCAGGAGCGCGGCCCTCCTCCAGCATCTCA
GAGTCTCGCCCACTACGGGCCACAGGCGCGCTTTCTGGTACCGAGCTCGC
CGAGCAGGCCTCTCAGCGCTCCTTCGACAGCTGACATGTACAATCGAGAG
GCAGCGTTTGGCCATGTAGGGCTTGATGTCCACGTGGAAAACCAAGATAC
CGACAGCAACATCTTTGACCCCGACATCGTCGACCGTCAGTGGCCGGACG
GAGCCGAGGCGGTCGCAGCTATAAAGGTGTGGGGCCTCGGGAATACGCCG
CCTCGGCAGATCACTGTCACCAAGCCTGGCGGACACAACAAGAGAATGGA
GTGCACCGGCCCCACCTGCCCCGTCTTCTTAACGTTGGGTTGCGGCAAGA
AGAACTCGGAGACGTCGTCCACCATGTGGCGCGTACGCTCGTACTGCCTC
GGCCACGTCAACTGCACCAGCGTGGCGGCGCCTTCCATCAAGCAGCTCCA
AATGCTCCAGGCGCCGGTGACAGCAACACTTTCTGACTTCGCCGTTTCGA
GCAAGACGATGGTGAACAGCCTCTACGGGACGACCGGCCTGAAGATCACC
AACCGCCAGGCGCTGCGGGCGCGCAGCGCCATCACAAAGGCGAACGAAGG
CGGGTACGCAGAAGGCTTCATGGACATGAAAGGATGGCTCGAGGAGGTGG
CTGATGCGAACCCTACCAGCCACACGGCGTTCAAGGTCAACTCGGCGGGT
CGCTTCGACGCCGCCCTTATCGTTCTCCCTCGGGCCGCTGAGGTGCGTTT
CTCTCTTTGA
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