mRNA_P-wetherbeei_contig101.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig101.1.2
Unique NamemRNA_P-wetherbeei_contig101.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: A0A836C888_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C888_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.300e-49
Identity = 106/237 (44.73%), Postives = 140/237 (59.07%), Query Frame = 1
Query:  238 HAALACGVASVSMRGWRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAMEAEGVRAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKKGSAG-QTEQIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFLRA 945
            H  L    A+  M+GWR +QED+A              V   +FDGHSG +A+ FA+  +   V  +  W +GDV  AL  G+L  D A+     + GTTA+ AVV  T ++VA  GDSRA+LCRGG  + LS DHKP +  E+ RIRR GG +D  DP  PRV+ P   + +A SR LGDF FK      Q EQI++  P V+   RQD+D+F++LASDGVWDVM N ++  FL A
Sbjct:   34 HEKLHVAAATCKMQGWRRNQEDMAIAHANF--NGAPDVVFGGIFDGHSGPSASSFASEHIVPAVVKSAQWKAGDVDGAL--GFLDTDNALREAATKDGTTAICAVVGDTHLWVANCGDSRAVLCRGGAAVALSTDHKPNVPEERARIRRAGGYVDVFDPAVPRVMAPNCYMAMATSRTLGDFHFKTDKRRPQDEQIVSPRPAVVKMERQDDDQFIILASDGVWDVMSNQNVCDFLLA 266          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: D7G0F1_ECTSI (Protein phosphatase 2C-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F1_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.000e-47
Identity = 107/253 (42.29%), Postives = 153/253 (60.47%), Query Frame = 1
Query:  211 VSKTCREFSHAALACGVASVSMRGWRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAMEAEGVRAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGG-VIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKKG-SAGQTEQIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFLRACGRRSV 963
            +S   RE  H  L   + + S++GWR +QED + +   L  +  +  +GV VFDGHSG  A+ + A  +W +V AT  W  GD+  AL   +LAVD  M+ + V  GTTAV AVVT   +YVA  GDSRA+LC+ G    +S DHKP + +E+ R+ RCGG VI        RV  PG+ + +A SR+LGDF FK+  +A Q+EQ+++   +V+   R   DEFL+L +DGVWDV+ N ++G  +RA  R  +
Sbjct:    1 MSPELREDIHEDLGVSLVACSLKGWRKTQEDTSAIVINLGGR--KDMLGVGVFDGHSGQEASKYVAENMWNQVIATTEWGHGDIDGALKAAFLAVDANMQRDKVCHGTTAVVAVVTPGNLYVANCGDSRAVLCKEGVATAMSTDHKPCVHTERSRVIRCGGQVIPGEFGGVARVTAPGSMVAMATSRSLGDFHFKRNYNADQSEQVVSPAAEVVCVRRALGDEFLILGTDGVWDVLSNQEVGDMMRASNRTRI 251          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: A0A1Y2HB84_9FUNG (Phosphatase 2C-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HB84_9FUNG)

HSP 1 Score: 155 bits (391), Expect = 5.970e-38
Identity = 104/233 (44.64%), Postives = 137/233 (58.80%), Query Frame = 1
Query:  262 ASVSMRGWRSSQEDVANVRCRLVLKSGESAVGV-AVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAM----EAEGVRAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKKGSAGQTE-QIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFLR 942
            A+ +M+GWR S ED A+     + K G    G  AVFDGH G   A +A + L  R+A  EA+  GD AAAL +G+LA+D+ +    E  G  AG TAVTA++T  AIYVA  GDSRA+L + G  + LS DHKP    EQERI   GG ++       RV     N  +A+SRALGDF FK+      E QI+TA PD+  A  + + EFL+LA DG+WD + N D   ++R
Sbjct:   25 AASAMQGWRISMED-AHTTENNINKDGSPEFGFFAVFDGHGGHTVAQYAGKLLHTRIADQEAFKKGDYAAALKQGFLALDQELRDHQEFRGDPAGCTAVTALITDDAIYVANAGDSRAVLGQNGNAIALSEDHKPSNDHEQERITSAGGFVEFG-----RV-----NGNLALSRALGDFEFKQSPDLPPERQIVTADPDIRQAKIEPDHEFLILACDGIWDCVSNEDAVTYVR 246          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: A7S778_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S778_NEMVE)

HSP 1 Score: 151 bits (382), Expect = 3.070e-37
Identity = 99/234 (42.31%), Postives = 136/234 (58.12%), Query Frame = 1
Query:  259 VASVSMRGWRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAM----EAEGVRAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKKGSAGQTE-QIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFLRA 945
            +AS  M+GWR + ED A+    L LK  ++   + V+DGH GA  A +  + L +++A+  AWA G+V  AL +G+L+ D  M    + +   AGTTAV  V+    +Y A VGDSRAI C+ G   QLS DHKP    E  RI   GG ++ +     RV     N  +A+SRALGDF FKK      E QI+TAMPDV+      + EFLVLA DG+WDV+ N ++  F+R+
Sbjct:   24 LASSCMQGWRINMED-AHTEI-LSLKEDKNTAFLGVYDGHGGARVAQYVGQNLQKKIASQPAWAKGNVIEALKKGFLSCDTDMLKDEQMKDEVAGTTAVVVVIKNNKLYCANVGDSRAIACKKGLVEQLSFDHKPSNEEETRRIIAAGGWVEFN-----RV-----NGNLALSRALGDFCFKKNDKKPPEEQIVTAMPDVIVKDLTPDHEFLVLACDGIWDVLSNQEVVDFIRS 245          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: B4JGT6_DROGR (GH18902 n=6 Tax=Drosophila TaxID=7215 RepID=B4JGT6_DROGR)

HSP 1 Score: 151 bits (381), Expect = 1.410e-36
Identity = 102/279 (36.56%), Postives = 144/279 (51.61%), Query Frame = 1
Query:  271 SMRGWRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAM-------EAEGVRAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKK-GSAGQTEQIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFLRACGRRSVETAAVTGEVGGALGSSGQQD---------PQEPAALEEAV 1056
            SM+GWR   ED    + RL   S E     AVFDGH+G   +   A+ L E + +TE + SGD    +  G+L +D  M       + E    GTTAV   ++ T +Y+A  GDSRA+LCR G  +  + DHKP L  E+ERI   GG           V++   N  +A+SRALGD+ FK     GQ EQ+++  P++   +RQD DEFLVLA DG+WDVM N D+  F+ +  + + +   +  +V       G +D         P  P   EEA+
Sbjct:   28 SMQGWRCEMEDAYFAKARLG-NSLEEWSFFAVFDGHAGCKVSEHCAQHLLESIISTEEFKSGDHVKGIRTGFLRIDEKMRQLPEFTQEEEKCGGTTAVCVFISSTQVYIANCGDSRAVLCRTGVPVFATQDHKPILPEEKERIHNAGG----------SVMIKRVNGTLAVSRALGDYDFKNVKEKGQCEQLVSPEPEIFCQSRQDTDEFLVLACDGIWDVMSNEDVCSFIYSRLKVTTDLVNIANQVVDTCLHKGSRDNMSIIIIAFPGAPKPTEEAI 295          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: A0A139ANK3_GONPJ (Protein phosphatase 2C n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ANK3_GONPJ)

HSP 1 Score: 149 bits (375), Expect = 2.540e-36
Identity = 102/242 (42.15%), Postives = 135/242 (55.79%), Query Frame = 1
Query:  271 SMRGWRSSQEDVANVRCRLVLKS---GESAVGV----------AVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAM----EAEGVRAGTTAVTAVVTRT-AIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKKG-SAGQTEQIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFL 939
            SM+GWR S ED      RL  ++   G SA  +           VFDGH GA+ A +A +RL  +VA  E +A GD   AL +G+L++D  +    + +   +G TAV A+VT    IYVA  GDSR +LC  GK + +S DHKPG   E  RI R GG ++       RV     N  +A+SRALGDF FK+  S    EQ++TA PDV+       DEFLVLA DG+WDV+DN  +  F+
Sbjct:   28 SMQGWRISMEDAHTTILRLPNRAPPFGNSATTMFDAKLHHSFYGVFDGHGGASVAQYAGKRLHWKVAQQEEFAKGDFETALKKGFLSIDDELRDDPDFQNDPSGCTAVVAIVTDDDVIYVANAGDSRCVLCSDGKAVAMSEDHKPGNPDESARIMRGGGFVEYG-----RV-----NGNLALSRALGDFEFKQNPSLPPEEQVVTAFPDVVARKVTPSDEFLVLACDGIWDVLDNQQVCDFV 259          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: A0A0B4K7Q3_DROME (Alphabet, isoform F n=2 Tax=Drosophila melanogaster TaxID=7227 RepID=A0A0B4K7Q3_DROME)

HSP 1 Score: 149 bits (376), Expect = 2.840e-36
Identity = 104/280 (37.14%), Postives = 144/280 (51.43%), Query Frame = 1
Query:  271 SMRGWRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAM--------EAEGVRAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKK-GSAGQTEQIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFLRACGRRSVETAAVTGEVGGALGSSGQQD---------PQEPAALEEAV 1056
            SM+GWRS  ED    R  L     + +   AVFDGH+G   +   A+ L E + +TE +  GD    +  G+L +D  M        E+E    GTTAV A V  T +Y+A  GDSRA+LCR G  +  + DHKP L  E+ERI   GG           V++   N  +A+SRALGD+ FK     GQ EQ+++  P++   +RQD DEFLVLA DG+WDVM N D+  F+ +  R +    ++  +V       G +D         P  P   EEA+
Sbjct:   28 SMQGWRSEMEDAYYARAGLGDALPDWSF-FAVFDGHAGCKVSEHCAKHLLESIISTEEFIGGDHVKGIRTGFLRIDEVMRELPEFTRESEKC-GGTTAVCAFVGLTQVYIANCGDSRAVLCRQGVPVFATQDHKPILPEEKERIYNAGG----------SVMIKRVNGTLAVSRALGDYDFKNVKEKGQCEQLVSPEPEIFCQSRQDSDEFLVLACDGIWDVMSNEDVCSFIHSRMRVTSNLVSIANQVVDTCLHKGSRDNMSIIIIAFPGAPKPTEEAI 295          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: T1GNB8_MEGSC (PPM-type phosphatase domain-containing protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GNB8_MEGSC)

HSP 1 Score: 147 bits (371), Expect = 3.130e-36
Identity = 93/234 (39.74%), Postives = 133/234 (56.84%), Query Frame = 1
Query:  271 SMRGWRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAM--------EAEGVRAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKKG-SAGQTEQIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFLRA 945
            SM+GWRS  ED A+   RL     + +   AVFDGH+G   +   A+ L + +  TE + +GD    +  G+L +D  M        E E +  GTTAV + +    +Y+A  GDSRA+LCR G+ +  + DHKP L  E ERI++ GG           V++   N  +A+SRALGD+ FK     GQ EQ+++  P+V    RQ++DEFLVLA DGVWDVM N D+  F+++
Sbjct:   28 SMQGWRSEMED-AHASARLGEPFSDWSF-FAVFDGHAGGKVSEHCAKNLLQFILETEEFKNGDFIKGIRTGFLKIDEVMRVLPELTAEPEKI-GGTTAVCSFIAPNQLYIANCGDSRAVLCRNGRPVFATQDHKPELPKETERIQQAGG----------SVMIQRVNGSLAVSRALGDYDFKNDREKGQCEQLVSPEPEVFCQERQEDDEFLVLACDGVWDVMTNEDICSFIQS 248          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: A0A811KHG7_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811KHG7_9BILA)

HSP 1 Score: 151 bits (382), Expect = 3.500e-36
Identity = 99/233 (42.49%), Postives = 130/233 (55.79%), Query Frame = 1
Query:  259 VASVSMRGWRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAM----EAEGVRAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKKGS-AGQTEQIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFLR 942
            VAS +M+GWR S ED  +    L     E A   AV+DGH GA  A FA   L +RV   E +A GD+A+A+  G+L +D  +    E +   +GTTAVT ++    IY    GDSRA+LC  GK + LS DHKP    E +RI   GG ++       RV     N  +A+SRALGDF FK G      EQ++TA PDV+      + EF+VLA DGVWDV+ N  +  F+R
Sbjct:   24 VASCAMQGWRISMED--SHTQLLSCPDDEKAAFFAVYDGHGGARVAQFAGMHLHKRVVGNEDFAKGDIASAIRNGFLKIDEDLRNDEETKEQMSGTTAVTVLIKDGKIYCGNAGDSRAVLCEQGKAIPLSFDHKPTNDEETQRIVAAGGWVEAG-----RV-----NGNLALSRALGDFIFKTGEHIKPEEQVVTAYPDVVEVELTRDHEFIVLACDGVWDVLTNEQVVWFVR 244          
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Match: W5J7F0_ANODA (Protein phosphatase 2c n=3 Tax=Nyssorhynchus TaxID=44543 RepID=W5J7F0_ANODA)

HSP 1 Score: 149 bits (377), Expect = 3.650e-36
Identity = 93/230 (40.43%), Postives = 135/230 (58.70%), Query Frame = 1
Query:  271 SMRGWRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVAATEAWASGDVAAALTEGYLAVDRAME-----AEGV-RAGTTAVTAVVTRTAIYVAGVGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVVVPGTNIGIAISRALGDFAFKKGSA-GQTEQIMTAMPDVLTAARQDEDEFLVLASDGVWDVMDNHDMGMFL 939
            SM+GWR   ED  + +  L  K  E     A+FDGH+G   A   A  L +R+ +T  +++ D+  A+  G+L  D AM      A G  ++GTTAV A ++R  +Y+A  GDSRA+LCR  + +  + DHKP L  E+ERI+  GG           V+V   N  +A+SRALGD+ +K+G+A GQ EQ+++  P++    R+  DEFLVLA DGVWDVM N ++  F+
Sbjct:   28 SMQGWRCEMEDAYHAKTGLGEKL-EDWNYFAMFDGHAGDNVAKHCAENLLQRIVSTTEFSNNDITRAIHSGFLQQDEAMRGIPELASGADKSGTTAVCAFISREHLYIANCGDSRAVLCRNAQPVFTTQDHKPILPGEKERIQNAGG----------SVMVQRVNGSLAVSRALGDYDYKQGTALGQCEQLVSPEPEIFCQDREPNDEFLVLACDGVWDVMSNLEVCQFV 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig101.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C888_9STRA3.300e-4944.73Phosphatase 2C-like domain-containing protein n=1 ... [more]
D7G0F1_ECTSI4.000e-4742.29Protein phosphatase 2C-like n=1 Tax=Ectocarpus sil... [more]
A0A1Y2HB84_9FUNG5.970e-3844.64Phosphatase 2C-domain-containing protein n=1 Tax=C... [more]
A7S778_NEMVE3.070e-3742.31Predicted protein n=2 Tax=Nematostella vectensis T... [more]
B4JGT6_DROGR1.410e-3636.56GH18902 n=6 Tax=Drosophila TaxID=7215 RepID=B4JGT6... [more]
A0A139ANK3_GONPJ2.540e-3642.15Protein phosphatase 2C n=1 Tax=Gonapodya prolifera... [more]
A0A0B4K7Q3_DROME2.840e-3637.14Alphabet, isoform F n=2 Tax=Drosophila melanogaste... [more]
T1GNB8_MEGSC3.130e-3639.74PPM-type phosphatase domain-containing protein n=1... [more]
A0A811KHG7_9BILA3.500e-3642.49Hypothetical protein n=1 Tax=Bursaphelenchus okina... [more]
W5J7F0_ANODA3.650e-3640.43Protein phosphatase 2c n=3 Tax=Nyssorhynchus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig101contigP-wetherbeei_contig101:2982..6032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0F1
PFAMsPP2C
Model size2059
Max annot lvl2759|Eukaryota
KEGG koko:K04457,ko:K04461
KEGG Pathwayko04010,ko04013,map04010,map04013
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.84e-49
EggNOG OGsCOG0631@1|root,KOG0697@2759|Eukaryota
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-20_001760.1
EC3.1.3.16
Descriptionmanganese ion binding
Cds size1689
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig101.1.2prot_P-wetherbeei_contig101.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig101 3402..5794 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.4224632-UTR-P-wetherbeei_contig101:2981..30681683185854.4224632-UTR-P-wetherbeei_contig101:2981..3068Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig101 2982..3068 +
1683185854.4311676-UTR-P-wetherbeei_contig101:3356..34011683185854.4311676-UTR-P-wetherbeei_contig101:3356..3401Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig101 3357..3401 +
1683185854.4594595-UTR-P-wetherbeei_contig101:5794..60321683185854.4594595-UTR-P-wetherbeei_contig101:5794..6032Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig101 5795..6032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.4382553-CDS-P-wetherbeei_contig101:3401..38901683185854.4382553-CDS-P-wetherbeei_contig101:3401..3890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig101 3402..3890 +
1683185854.445192-CDS-P-wetherbeei_contig101:4107..42891683185854.445192-CDS-P-wetherbeei_contig101:4107..4289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig101 4108..4289 +
1683185854.4522645-CDS-P-wetherbeei_contig101:4776..57941683185854.4522645-CDS-P-wetherbeei_contig101:4776..5794Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig101 4777..5794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig101.1.2

>prot_P-wetherbeei_contig101.1.2 ID=prot_P-wetherbeei_contig101.1.2|Name=mRNA_P-wetherbeei_contig101.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=563bp
MGACCCSAAKRPPGGGGAAGGLPTAGVSKTCREFSHAALACGVASVSMRG
WRSSQEDVANVRCRLVLKSGESAVGVAVFDGHSGAAAALFAARRLWERVA
ATEAWASGDVAAALTEGYLAVDRAMEAEGVRAGTTAVTAVVTRTAIYVAG
VGDSRAILCRGGKELQLSVDHKPGLASEQERIRRCGGVIDRSDPRCPRVV
VPGTNIGIAISRALGDFAFKKGSAGQTEQIMTAMPDVLTAARQDEDEFLV
LASDGVWDVMDNHDMGMFLRACGRRSVETAAVTGEVGGALGSSGQQDPQE
PAALEEAVAAEKLAAAMAAAAAAEAGEKGAAGAMEEAAAAAAAAASSSTA
ALQQNETLPEPPPPLRPGMAGVVGSPAAPSGHHMVLDRTKAKNSPFLTRC
ELLLDRCLELGTMDNCTVCVVDLRDCDEAAASPTVAGLGGGGGTRLLGET
VDAALAVDNDSRRHHAAAATGAAAAMASSPLRSASACSSPGAGIAETTAL
LHCNGAGASDHSGAAAATGGGGDEEAAPLMAAAMVAAMPVRLGQVLRSVS
SRGSLVSPPVAA*
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mRNA from alignment at P-wetherbeei_contig101:2982..6032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig101.1.2 ID=mRNA_P-wetherbeei_contig101.1.2|Name=mRNA_P-wetherbeei_contig101.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3051bp|location=Sequence derived from alignment at P-wetherbeei_contig101:2982..6032+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTCACACAGCTCTTAATACATCAAACGTCTACGAGAGATCTGAACCGT TCAGCGTCGTGCTGTGTTCGGGGAAAAACCAACTAAGGTGCAGTGCACCG TTTTCCCTCGGAAAGCTGCGTGAAAACGAAGGGCAACAACGTGTATCTCT TCTCTCCCCTCTTAATGAATCGCGCCAACTTTGGCTCTAGTTGTGATGTG CCATACCTCTTTTGTTGTTTCGGTGCCTTCCTCGTCAACTCCCTCTCTCT CCCCTTTTCACAGCCGACATCGTGGCATTATTTTTGTGGAGGGCTTGTTC TTGTTTGGCCTTTCGCATTTCATCCTTATCTGAATCTCTCTTTTTTGCCG CAACCACCCTTTTGCTCCTGTTCAGGGATACCTGTAATCTCCTTTAAGCT TTGCGCCGCGGCGGCAGCAAATGGGGGCGTGCTGCTGTTCAGCGGCGAAG CGACCGCCGGGCGGCGGCGGCGCCGCCGGTGGCCTCCCGACGGCGGGGGT AAGTAAGACTTGCCGGGAGTTCTCACACGCTGCCCTCGCCTGCGGCGTCG CCAGCGTATCGATGCGTGGCTGGCGCTCGTCACAGGAAGATGTCGCCAAT GTCCGCTGTCGCCTCGTCCTCAAGAGCGGCGAGTCCGCCGTCGGCGTTGC CGTCTTCGACGGCCACTCGGGAGCGGCGGCGGCGCTCTTCGCAGCCCGGC GCCTCTGGGAGCGAGTGGCAGCGACGGAGGCGTGGGCGTCCGGCGACGTG GCGGCGGCGCTGACGGAGGGATATTTGGCGGTGGACCGCGCGATGGAGGC GGAAGGGGTGCGGGCGGGCACGACAGCCGTCACGGCCGTCGTCACCAGGA CAGCAATTTATGTGGCCGGCGTCGGCGACTCGCGCGCCATACTCTGCCGC GGCGGCAAGGTGAGGACGTTTCGGATGCTTTCGTGTGTGTTGAGCGTTCA GAAGAGAGCGCACTGCTTTGTTGCCCTGGACCGAATGGATTTTCAGGTTG ACGATGACCACTGTTTGTAGGCTTTGGTCGAAAGACATGCTGCAACTCGT TGAGCGCAGTAACGGTCAAACGCATGTGTCAACCGTATTGCTTCCATTCC GCAACGTTCATCGCGGGCATTCGCAGGAGCTGCAGCTGTCGGTGGACCAT AAGCCGGGATTGGCGTCGGAGCAAGAGCGGATCCGGCGGTGTGGCGGCGT CATCGATCGGTCGGACCCGCGCTGCCCCCGCGTGGTGGTTCCGGGCACCA ACATCGGCATCGCCATCTCGCGGGCACTGGGGGACTTCGCCTTCAAGAAA GGGAGCGCGTGAGTTGGGTTCGGGTGATTTGGGTTCGGGCGGCGGCTGGC AGCGGCGGTAGAGGTGGACGGGCTGCTTTAGGGTGATTGTTTTCAAGGGA ATGTGTGCAACTCTTGATGTTGCAATCTTATGACAACAAGTGTGGAAAAG GGCTTCCTCTGTAGGGATTGACTCAGCTCTACGCTTGCAGTTTTATCTAG TGGCACTTGTGAGCCAGGCTTTTTTCGTGACGAGTAGCTCACTTCCCCTC TGGTGAAGCTTCCAATTGATTGCGTCAAGTATCAGTACGTTCGATGGCGA TGCCGACTGCGGGAAAGACGTTAAGTCCCGGAAGTGGTGCCGCTGGTTCA CGTTTTGCGCTCCCTTCTTGCCGTGTCGACAGATAGCTCGTCGCTTGCCT TCCTTTTGGCATCTTCCTGTCGTTCGGCGGAAGCGACCTAACTAAACATG CGTTCGTCCTTTGTTCCCCTTCTTGCGCCGCCGACGCATCCGCAGGGGCC AGACGGAGCAGATCATGACGGCAATGCCGGATGTCTTGACAGCGGCGCGG CAGGATGAGGACGAGTTTTTGGTTTTGGCGAGCGACGGTGTCTGGGACGT CATGGACAACCACGACATGGGAATGTTTCTGCGGGCCTGCGGGAGGCGAA GCGTCGAAACGGCCGCCGTGACCGGCGAAGTCGGCGGAGCGTTGGGCTCC TCGGGGCAGCAGGACCCTCAGGAGCCGGCGGCCTTAGAAGAGGCTGTGGC AGCGGAAAAGTTGGCTGCAGCCATGGCGGCAGCCGCGGCAGCGGAAGCGG GAGAGAAGGGAGCAGCAGGAGCGATGGAAGAGGCGGCGGCCGCGGCGGCA GCAGCGGCCAGCTCTTCAACAGCAGCGCTGCAGCAGAACGAGACACTGCC AGAGCCGCCCCCACCGCTGCGGCCGGGGATGGCGGGGGTGGTGGGCTCGC CGGCGGCGCCGTCGGGGCACCACATGGTACTCGACAGAACAAAAGCGAAG AATTCGCCGTTCTTGACGCGGTGCGAGTTGCTTCTGGATCGATGCCTCGA ATTGGGCACGATGGACAACTGTACGGTGTGCGTCGTCGATCTCCGCGACT GCGACGAGGCGGCCGCCTCTCCGACCGTCGCAGGCCTCGGCGGCGGCGGC GGCACCCGATTGCTCGGCGAGACCGTTGACGCTGCTCTCGCCGTCGACAA CGACAGCCGTCGCCACCATGCCGCCGCCGCCACTGGCGCTGCGGCTGCAA TGGCGTCCTCGCCGCTACGATCGGCGTCGGCGTGTTCGTCGCCCGGGGCG GGAATAGCGGAGACGACAGCGTTGCTCCACTGCAATGGAGCTGGTGCCAG CGATCACAGCGGCGCCGCCGCCGCGACGGGCGGCGGCGGCGACGAGGAGG CGGCGCCGTTGATGGCCGCAGCCATGGTCGCGGCGATGCCGGTAAGGCTG GGACAGGTGCTGCGGTCCGTGAGCTCGAGAGGGTCGCTGGTTTCCCCGCC GGTCGCCGCGTGAGAAGAGGGGTGAGAGCGTGCAAAAGTTGAAAATCTTT CTGAAGAGGTTAACGACGAATATGCTGGACGTTTATTTTGGTGGGGTTTT TGGGGGGGAGCTTCGAGCGGCACGGAAGTATAGAATCCTGCGGTAGGAAA GTATAGATCCCCGTTTACGCAAACGAATCAAATGAGACAAAGCAAACTTC CTTTCAAGGTCACCGTGTTTATGCTGCCGGCTTGCCACCTGATGCCGCGT C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig101:2982..6032+

>mRNA_P-wetherbeei_contig101.1.2 ID=mRNA_P-wetherbeei_contig101.1.2|Name=mRNA_P-wetherbeei_contig101.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1689bp|location=Sequence derived from alignment at P-wetherbeei_contig101:2982..6032+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGCGTGCTGCTGTTCAGCGGCGAAGCGACCGCCGGGCGGCGGCGG
CGCCGCCGGTGGCCTCCCGACGGCGGGGGTAAGTAAGACTTGCCGGGAGT
TCTCACACGCTGCCCTCGCCTGCGGCGTCGCCAGCGTATCGATGCGTGGC
TGGCGCTCGTCACAGGAAGATGTCGCCAATGTCCGCTGTCGCCTCGTCCT
CAAGAGCGGCGAGTCCGCCGTCGGCGTTGCCGTCTTCGACGGCCACTCGG
GAGCGGCGGCGGCGCTCTTCGCAGCCCGGCGCCTCTGGGAGCGAGTGGCA
GCGACGGAGGCGTGGGCGTCCGGCGACGTGGCGGCGGCGCTGACGGAGGG
ATATTTGGCGGTGGACCGCGCGATGGAGGCGGAAGGGGTGCGGGCGGGCA
CGACAGCCGTCACGGCCGTCGTCACCAGGACAGCAATTTATGTGGCCGGC
GTCGGCGACTCGCGCGCCATACTCTGCCGCGGCGGCAAGGAGCTGCAGCT
GTCGGTGGACCATAAGCCGGGATTGGCGTCGGAGCAAGAGCGGATCCGGC
GGTGTGGCGGCGTCATCGATCGGTCGGACCCGCGCTGCCCCCGCGTGGTG
GTTCCGGGCACCAACATCGGCATCGCCATCTCGCGGGCACTGGGGGACTT
CGCCTTCAAGAAAGGGAGCGCGGGCCAGACGGAGCAGATCATGACGGCAA
TGCCGGATGTCTTGACAGCGGCGCGGCAGGATGAGGACGAGTTTTTGGTT
TTGGCGAGCGACGGTGTCTGGGACGTCATGGACAACCACGACATGGGAAT
GTTTCTGCGGGCCTGCGGGAGGCGAAGCGTCGAAACGGCCGCCGTGACCG
GCGAAGTCGGCGGAGCGTTGGGCTCCTCGGGGCAGCAGGACCCTCAGGAG
CCGGCGGCCTTAGAAGAGGCTGTGGCAGCGGAAAAGTTGGCTGCAGCCAT
GGCGGCAGCCGCGGCAGCGGAAGCGGGAGAGAAGGGAGCAGCAGGAGCGA
TGGAAGAGGCGGCGGCCGCGGCGGCAGCAGCGGCCAGCTCTTCAACAGCA
GCGCTGCAGCAGAACGAGACACTGCCAGAGCCGCCCCCACCGCTGCGGCC
GGGGATGGCGGGGGTGGTGGGCTCGCCGGCGGCGCCGTCGGGGCACCACA
TGGTACTCGACAGAACAAAAGCGAAGAATTCGCCGTTCTTGACGCGGTGC
GAGTTGCTTCTGGATCGATGCCTCGAATTGGGCACGATGGACAACTGTAC
GGTGTGCGTCGTCGATCTCCGCGACTGCGACGAGGCGGCCGCCTCTCCGA
CCGTCGCAGGCCTCGGCGGCGGCGGCGGCACCCGATTGCTCGGCGAGACC
GTTGACGCTGCTCTCGCCGTCGACAACGACAGCCGTCGCCACCATGCCGC
CGCCGCCACTGGCGCTGCGGCTGCAATGGCGTCCTCGCCGCTACGATCGG
CGTCGGCGTGTTCGTCGCCCGGGGCGGGAATAGCGGAGACGACAGCGTTG
CTCCACTGCAATGGAGCTGGTGCCAGCGATCACAGCGGCGCCGCCGCCGC
GACGGGCGGCGGCGGCGACGAGGAGGCGGCGCCGTTGATGGCCGCAGCCA
TGGTCGCGGCGATGCCGGTAAGGCTGGGACAGGTGCTGCGGTCCGTGAGC
TCGAGAGGGTCGCTGGTTTCCCCGCCGGTCGCCGCGTGA
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