mRNA_P-wetherbeei_contig10095.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10095.1.1
Unique NamemRNA_P-wetherbeei_contig10095.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10095.1.1 vs. uniprot
Match: A0A7S2RWM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWM3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.910e-13
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 1 
Query:  670 LSLCVAAAGFSPMPSKASGAQRFNVYGPARLVRGDVDPWYKNFH-----AHDYGETGLFMPTGMHCCAADLVSFHYVMPAEQAHLYDMVYHRERHAALTPAQLAAAWPEEHVDVAFR-PREEDDDV-WTLL 1041
            L+ C+ ++G  P  +      RF+ YGP R+V G VD WY+N+H     A +    G     G+ CCAAD  SFHYV  AE   LY ++  + R  A+      AAWP   +   +  P +  DD+ W  L
Sbjct:   13 LADCLHSSGVLPNSTLYLSKDRFHPYGPKRMVYGQVDQWYRNYHRFRKTAENGTREGGGASEGVACCAADSASFHYVEAAECRTLYAVISDQHRFRAMNRTSRHAAWPRPKLLGGYSTPVKLGDDLFWDFL 143
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BLAST of mRNA_P-wetherbeei_contig10095.1.1 vs. uniprot
Match: A0A7S2R8W1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8W1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.540e-11
Identity = 51/185 (27.57%), Postives = 84/185 (45.41%), Query Frame = 1 
Query:  550 SFNTNAAGFVLSRGAMSAVLALVDGPADRRGRCDVAHHQ------WLSLCVAAA--------GFSPMPSKASGAQRFNVYGPARLVRGDVDPWYKNFHAHDYGETGLFMPTGMHCCAADLVSFHYVMPAEQAHLYDMVYHRERHAALTPAQLAAAWPEEHV--DVAFRPREE--DDDVWTLLLQK 1050
            +F + AAG+++SR A   +       A +  RC     +       ++ C+           G   + + AS   R +VYGP RL+ G+VD W++ +     G TG     G  CC+A  +SFHY    EQ  L D++     + A+ P  L   WP   +    ++ P+++  ++ VW  LL K
Sbjct:  430 NFVSGAAGYLMSRSAFRQL-----DQAIQEKRCSGTKRERSQPGLLIAKCLGETLGVVPEELGGGDVLADASTGSRLHVYGPVRLISGNVDDWWRRYRE---GATGAPPQAGEDCCSALTISFHYAFGPEQKLLDDVLRRPAHYTAMDPGTLRGQWPSPQLLGGYSYFPKDQVTEEKVWDFLLHK 606
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10095.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2RWM3_9STRA2.910e-1335.11Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2R8W1_9STRA3.540e-1127.57Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10095contigP-wetherbeei_contig10095:2..1638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS30
PFAMsFringe,WSC
Model size1298
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.25e-21
EggNOG OGsKOG2246@1|root,KOG2246@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-16_004550.1
Descriptionglycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
Cds size477
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.281038-UTR-P-wetherbeei_contig10095:1..5951683185854.281038-UTR-P-wetherbeei_contig10095:1..595Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10095 2..595 +
1683185854.3049629-UTR-P-wetherbeei_contig10095:1411..16381683185854.3049629-UTR-P-wetherbeei_contig10095:1411..1638Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10095 1412..1638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.2894757-CDS-P-wetherbeei_contig10095:595..8681683185854.2894757-CDS-P-wetherbeei_contig10095:595..868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10095 596..868 +
1683185854.2971313-CDS-P-wetherbeei_contig10095:1207..14111683185854.2971313-CDS-P-wetherbeei_contig10095:1207..1411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10095 1208..1411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10095.1.1prot_P-wetherbeei_contig10095.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10095 596..1411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10095.1.1

>prot_P-wetherbeei_contig10095.1.1 ID=prot_P-wetherbeei_contig10095.1.1|Name=mRNA_P-wetherbeei_contig10095.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MSAVLALVDGPADRRGRCDVAHHQWLSLCVAAAGFSPMPSKASGAQRFNV
YGPARLVRGDVDPWYKNFHAHDYGETGLFMPTGMHCCAADLVSFHYVMPA
EQAHLYDMVYHRERHAALTPAQLAAAWPEEHVDVAFRPREEDDDVWTLLL
QKLQVCSG*
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mRNA from alignment at P-wetherbeei_contig10095:2..1638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10095.1.1 ID=mRNA_P-wetherbeei_contig10095.1.1|Name=mRNA_P-wetherbeei_contig10095.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1637bp|location=Sequence derived from alignment at P-wetherbeei_contig10095:2..1638+ (Phaeothamnion wetherbeei SAG_119_79)
TCGATTGATCGTGTTATCGGTCCGTTGTCTCCTTCTTCTTGTTCTTTCTT
TCCTTTGTACTGTAAGCGTTCTTCTGGGGTACTCTGGCGACGGTCTGTTG
TGAATGATCTGCTCGCTTCGACGGAAAGCCAGCTGAGTACTTATCAGATG
GACTGCCTGCTTTGGGGGCGTCGTTTCGTGAAGGCTTCGGAAGCAGCTTG
CATGCGCCCGTCGCCGTTCACTGGGGCGGTGATTGCTTCGCATTCTGTTG
TACATCCTTAAACTCCTCGAGTTTATGGTTGAGAGTCTTTCTCACCGCCG
CCATCCGCGCGGCTGGGCCCGAGCATGCGCTAAACAAACTGTCCCTTCCA
TTCACTTTCGTTGCGTTCCTCCCGTTCCGGTCCGCTCTTTCCCTTCCGTT
CTCCCTCCCGTTCCATTTCATTTCCGTATTCCTTCCATTCTGAGCCGGAC
CCGCCGGGAACACAACGGTTTCCGTTCCCTGCGCGACGCCGGCTCCGATG
ATAACAAACGGACAACGCACAACAACATAAACAAAGCAGCAAGCTGACGA
GCTTCAACACTAATGCGGCGGGCTTTGTCCTCAGCCGCGGCGCCATGAGC
GCCGTGCTGGCGCTCGTCGACGGCCCCGCCGATCGTCGCGGCCGCTGCGA
CGTGGCGCACCACCAGTGGCTGTCGCTCTGTGTCGCCGCCGCTGGCTTCT
CACCGATGCCGTCCAAGGCATCGGGGGCGCAAAGGTTCAATGTTTACGGT
CCGGCGCGACTTGTCAGAGGGGACGTGGATCCGTGGTACAAGAACTTCCA
CGCGCACGACTACGGCGAGACGGGACTCTTCATGCCGACGGGGATGCACT
GCTGCGCGGCCGACCTGGTGGGCTATGAGTCTGTCCTTCCTGTGCTGCGC
GGCCGACCTGGTGCGCTATGAGTCTATCCTTCCTGCTGTCTTTCCATCTC
CTGTCTTTCTTCTGTCTTCTCTCTCAGTTTTGTTTCGTGTAGATCCATCT
GGGCAGGAGTGATGTTGTATGCCTGTTTGTGTCTTGGGCTTGACTGGAAA
CGTTGTTTTTTCATGATTTTGATATAGAGTGAGAACGAAGAACCGTGTTT
TGGGTTCGCCGCTGTGCTTCCTTCTCAACCTATCCGTGCGCTCTTTCCGC
CCCCCTCCTCTTTCTCCTTATTTCTCCGCCTTCCGCACCTTGCGATGTGC
CGGTAGGTGTCGTTCCACTACGTCATGCCGGCGGAGCAGGCACACCTCTA
CGACATGGTCTACCACCGCGAGCGGCACGCTGCGCTGACGCCGGCGCAGC
TGGCCGCGGCATGGCCCGAGGAGCATGTCGACGTCGCATTCCGCCCGCGG
GAGGAGGACGACGACGTCTGGACGCTGCTGCTGCAGAAGCTCCAGGTCTG
CTCGGGCTGACACGGATCCGAACGTACCGGCCGTGGAAAATCCGACCGGT
AGTGAATAGCTGCTGATGACGTGAAGAGGAGGTGACGGCGGCGGCGGCAG
TGGCGGCGGCGGTGGTGGCGGGGGACAGCTGCGGACGGCAGCGGCGGCAT
CGGCGGCAGCGGTGGTGGGAACGGCCGTGACGACGGCGGCATCGGAGTTT
GCAACGACAGTAACCGCAGGCGGTGGTGGCAGTGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10095:2..1638+

>mRNA_P-wetherbeei_contig10095.1.1 ID=mRNA_P-wetherbeei_contig10095.1.1|Name=mRNA_P-wetherbeei_contig10095.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig10095:2..1638+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCCGTGCTGGCGCTCGTCGACGGCCCCGCCGATCGTCGCGGCCG
CTGCGACGTGGCGCACCACCAGTGGCTGTCGCTCTGTGTCGCCGCCGCTG
GCTTCTCACCGATGCCGTCCAAGGCATCGGGGGCGCAAAGGTTCAATGTT
TACGGTCCGGCGCGACTTGTCAGAGGGGACGTGGATCCGTGGTACAAGAA
CTTCCACGCGCACGACTACGGCGAGACGGGACTCTTCATGCCGACGGGGA
TGCACTGCTGCGCGGCCGACCTGGTGTCGTTCCACTACGTCATGCCGGCG
GAGCAGGCACACCTCTACGACATGGTCTACCACCGCGAGCGGCACGCTGC
GCTGACGCCGGCGCAGCTGGCCGCGGCATGGCCCGAGGAGCATGTCGACG
TCGCATTCCGCCCGCGGGAGGAGGACGACGACGTCTGGACGCTGCTGCTG
CAGAAGCTCCAGGTCTGCTCGGGCTGA
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