mRNA_P-wetherbeei_contig10073.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10073.1.1
Unique NamemRNA_P-wetherbeei_contig10073.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: A0A1F4A4V6_9PROT (Cupin_2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A4V6_9PROT)

HSP 1 Score: 355 bits (911), Expect = 1.090e-120
Identity = 170/279 (60.93%), Postives = 206/279 (73.84%), Query Frame = 1
Query:    1 MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASEQPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIASPADV 837
            MA+  NES++ A   G  A RQ LLTP+R+  + ILLDR V+   G  +++V + ++ WFQ+L G+A LT       +  +H+ FLPP  R TL S  GA+LL A VP+AARFD     NPP FR VDW REPVLDS+HDARKRIY+VTPKLFGTK +KGEMIIYP GT AANHHHEGAEHFMY+LRG GTA+A+E P PVR+GD++YY D ERHYLK++ D E+ F EFFVPG Y+TVW     +CTWLPTG +I GEKP REI+AHSSAE ASP DV
Sbjct:    1 MAITLNESAVTAEALGRNARRQRLLTPSRVKDSRILLDRWVLGAAGHSDIDVPSRNLVWFQVLEGEASLTCPDHDERLTDSHIVFLPPGFRGTLESARGAALLYAEVPNAARFDPDFAGNPPRFRVVDWTREPVLDSKHDARKRIYIVTPKLFGTKAIKGEMIIYPPGTEAANHHHEGAEHFMYVLRGCGTAYANESPIPVRSGDLIYYGDRERHYLKSEGDVEMAFVEFFVPGVYQTVWAPGASICTWLPTGRNIRGEKPAREIEAHSSAEAASPQDV 279          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: UPI00136B28AE (cupin domain-containing protein n=1 Tax=Propylenella binzhouense TaxID=2555902 RepID=UPI00136B28AE)

HSP 1 Score: 318 bits (815), Expect = 4.340e-106
Identity = 157/281 (55.87%), Postives = 190/281 (67.62%), Query Frame = 1
Query:    1 MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGK--SMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASEQPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIASPADV 837
            MA+    +++AA   GE   R+ LL   R+P T ILLDR+ ++PG  + L VA G + WFQ+LAG AE +  G   + ++ A HV FLPP  R  L S  GA+L+ A  P+A   D+   A PP  R +DW REPVLDS+HDARKRIYL TP+LFGT  +KGEMIIYP GT  ANHHH GA+HFMY L+G GTA+A E+PF V+AGD+VYY DLERHYL AD D E+ F EFF PG YRTVWVN   VCTW PTG DI G   VR I  H   E A+P+DV
Sbjct:    1 MAIRVEVAAVAAEAVGEGVSRRRLLDTERVPRTRILLDRIEIAPGAALALEVAEGSLAWFQILAGTAEFSGSGVGGAAALGADHVVFLPPGFRGRLASAAGAALIMAEAPEADALDSDFAARPPALRILDWTREPVLDSEHDARKRIYLATPRLFGTHAIKGEMIIYPPGTSGANHHHVGADHFMYFLKGSGTAYADERPFRVKAGDLVYYPDLERHYLAADPDCEMAFVEFFAPGSYRTVWVNPETVCTWNPTGRDIRGNAGVRAIARHGG-EAATPSDV 280          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: A0A1F4DMT7_9PROT (Cupin_2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DMT7_9PROT)

HSP 1 Score: 286 bits (733), Expect = 4.250e-94
Identity = 132/247 (53.44%), Postives = 172/247 (69.64%), Query Frame = 1
Query:  103 ILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASEQPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSS--AEIASPADV 837
            +L+DR+ V  GG+  LNV AG++ WFQ+L G   L  DG+S S+    V  LPP    T+ ++ GA LL A VPDAA  D  L A PP F+ VDW REPVLDS+HDAR+RIY+ TPKL GTK +K E+I+YPKGTM +NHHHEGAEHF+Y+++G  T +++E+P    AGD+VY+ D ERHY     D EL+F EFFVP EY+TVW N+ ++CTW+PTG D  G +P REI+ H S  A +  P D+
Sbjct:    3 VLVDRITVQAGGSCPLNVPAGNLAWFQVLQGTLTLRHDGRSESLSDISVVLLPPQFEGTVLTQSGAGLLYAEVPDAAALDPALAAEPPSFKIVDWSREPVLDSKHDARRRIYVATPKLLGTKAIKAEIIVYPKGTMGSNHHHEGAEHFIYVMKGSTTGYSNEEPHRYSAGDLVYHPDGERHYSSTGPDEELMFVEFFVPAEYKTVWQNEKKICTWVPTGKDSRGGEPSREIRGHDSLSAAVKVPEDL 249          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: A0A327KCJ9_9HYPH (Cupin_2 domain-containing protein n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327KCJ9_9HYPH)

HSP 1 Score: 286 bits (731), Expect = 2.180e-93
Identity = 134/275 (48.73%), Postives = 175/275 (63.64%), Query Frame = 1
Query:    1 MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWA-SEQPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIA 822
            MA+ FN   + A P G+   RQ LL P R+P     LDRL ++PG +V L V    + WFQML G+A L+    + S++  H+  LPP    TL S GGA+LL A VPDA   D  + ANPPPFR VDW+ EP+L S+HDAR+RIY+VTPK+FG + ++GEMIIYP GT    HHHEG  HFMY L G GT WA ++Q   V  GD+VYYHD E H++K  D  +++F EFFVP    TVW + +++CTW+P G +  G  P R I+ H+    A
Sbjct:    1 MAIHFNARDVPAMPLGDGVTRQTLLDPTRVPDVRFTLDRLTLAPGASVRLAVDDDALAWFQMLDGRATLSFGDDTASVETTHIGLLPPGFDGTLASEGGATLLRAVVPDAVTLDPAVVANPPPFRLVDWREEPLLKSEHDARQRIYIVTPKMFGVRAIRGEMIIYPPGTECPVHHHEGGAHFMYFLTGNGTCWAGADQVMAVEPGDLVYYHDREPHWVKGGDAGDMIFSEFFVPSAVATVWADPSKICTWVPLGVNHRGGAPSRTIERHAHGPTA 275          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: UPI0017AFF8DA (Cupin domain-containing protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017AFF8DA)

HSP 1 Score: 285 bits (730), Expect = 3.090e-93
Identity = 134/275 (48.73%), Postives = 179/275 (65.09%), Query Frame = 1
Query:    1 MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASE-QPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIA 822
            MA+ FNES +A  P GE   RQ LL   R+P     LDRLV++ GG V L+V +  + WFQM+ G A L      +++   H+  LPP    TL S  GA+LL ASVPDA R DA + A+PPPFR VDW+ EP+L S+HDARKR+Y+VTPK+FG + ++GEMIIYP GT    HHHEG  HFMY L G+GT +A + Q   V+ GD+VYY D E H++K  D+ +++F EFFVP    TVW + +++CTW+P G +  G  P R I+ H+   +A
Sbjct:    1 MAIHFNESEVAPVPVGEGVTRQRLLDETRVPDILFALDRLVLAAGGAVALSVPSDSLSWFQMIDGSAMLRTADDEVAVAPTHIGLLPPGFSGTLESEAGATLLWASVPDAGRLDAAVIAHPPPFRLVDWREEPLLKSEHDARKRVYIVTPKMFGVRAIRGEMIIYPPGTECPVHHHEGGAHFMYFLAGQGTCYAGDDQEMRVKTGDLVYYPDREPHWVKGGDEGDMIFSEFFVPSAVATVWADPSKICTWIPMGVNHRGGTPSRVIEKHAHGPMA 275          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: A0A327KME2_9HYPH (Cupin_2 domain-containing protein n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KME2_9HYPH)

HSP 1 Score: 282 bits (721), Expect = 7.160e-92
Identity = 134/276 (48.55%), Postives = 181/276 (65.58%), Query Frame = 1
Query:    1 MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAEL-TRDGKSMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASE-QPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIA 822
            MA+ FN+S +   P GE   RQ LL   R+P     LDRLV++PGG + L+V    + WFQM+ G A + T DG++ ++   H+  LPP    +L S  GA+LL A+VPDA + DA + A PPPFR VDW+ EP+L S+HDARKRIY+VTPK+FG + ++GEMIIYP GT    HHHEG  HFMY L G+GT +A + Q   VR GDVVYYHD E H++K  +  +++F EFFVP    TVW + +++CTW+P G +  G  P R I+ H+   +A
Sbjct:    1 MALHFNQSEVEPEPIGEGVVRQRLLDETRVPDILFALDRLVIAPGGAIALDVPPDGLAWFQMIDGAALVSTADGET-AVAPTHIGLLPPGFSGSLTSEAGATLLYAAVPDAEKLDAAVVAKPPPFRLVDWREEPLLKSEHDARKRIYIVTPKMFGVRAIRGEMIIYPPGTTCPVHHHEGGAHFMYFLAGQGTCYAGDTQEMAVRPGDVVYYHDREPHWVKGGESEDMIFSEFFVPSAVATVWADPSKICTWIPMGVNHRGGAPSRVIEKHAHGPMA 275          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: A0A327KG55_9HYPH (Cupin_2 domain-containing protein n=1 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KG55_9HYPH)

HSP 1 Score: 282 bits (721), Expect = 7.160e-92
Identity = 134/275 (48.73%), Postives = 174/275 (63.27%), Query Frame = 1
Query:    1 MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASE-QPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIA 822
            MA+ FNES + A    +   RQ LL  AR+PG    LDR+V+SPG  V  ++A   +GWFQM+ G A L       ++   H+  LPP    TL S GGA+LL A VPD    D  +  +PPPFR VDW+ EP+L S+HDARKRIY+VTPK+FG + ++GEMIIYP GT    HHHEG  HFMY L G+GT +A E Q   VR GDVVYYHD E H++K  +  +++F EFFVP    TVW + ++VCTW+P G +  G  P R I+ H+   +A
Sbjct:    1 MAIHFNESEVVAEALADDVTRQRLLDAARVPGVLFELDRIVLSPGTAVTFDIAPDALGWFQMIDGSATLRMPDGDAAVLPTHIGLLPPGLSGTLDSEGGATLLFALVPDVGSLDPAVLKSPPPFRLVDWREEPLLKSEHDARKRIYIVTPKMFGVRAIRGEMIIYPPGTTCPVHHHEGGAHFMYFLAGQGTCYAGETQEMQVRTGDVVYYHDREPHWVKGGETGDMIFSEFFVPSAVATVWADPSKVCTWIPMGVNHRGGAPSRTIEKHAHGPMA 275          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: A0A848W026_9PROT (Cupin domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W026_9PROT)

HSP 1 Score: 280 bits (715), Expect = 6.200e-91
Identity = 139/279 (49.82%), Postives = 176/279 (63.08%), Query Frame = 1
Query:    1 MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASEQPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIASPADV 837
            MAV FNES+I A   G+    + L+TP R+    +  D++ +  G   + +V AGD+ W  +L G A L  D     ++  H  FLPP     L S  GA +  A+VPDAARFD+G  A     R +DW  EPVL+S+ DARKRIY+VTP+L GTK +KGEMI+YP GT AANHHHEGAEHF  ILRG  T + ++ P  V+AGD VY +D ERHY   D + EL F E+FVPG Y+TVW  +  +CTW P+G DI G  P REI AHSSAE  S  D+
Sbjct:    1 MAVFFNESTIDAEAQGDGVAIKHLITPERVNSDKVRTDQIRLDAGAETDFSVGAGDLAWAHVLDGAAVLVTDAGEQPLNQDHFLFLPPGQSARLKSEAGALVFRATVPDAARFDSGWDAAALECRCMDWTNEPVLNSEFDARKRIYMVTPQLSGTKAVKGEMILYPPGTQAANHHHEGAEHFQVILRGAATFYLNDAPHKVKAGDTVYIYDNERHYFINDGEEELAFIEYFVPGVYKTVWAENAPICTWNPSGKDIKGGTPSREIAAHSSAEAHSRTDL 279          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: A0A1Z8XB02_9GAMM (Cupin_2 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TMED78 TaxID=1986767 RepID=A0A1Z8XB02_9GAMM)

HSP 1 Score: 279 bits (713), Expect = 1.290e-90
Identity = 141/280 (50.36%), Postives = 176/280 (62.86%), Query Frame = 1
Query:    1 MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHS-RGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASEQPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIASPADV 837
            M V FN  S+      E  + + L+TP R+    ILLDR  + P   + +NV   D+ WFQ+L GQA LT    S  +   HV FLPP    T+ S     ++L   VP+A R+D     +   FR V+W+ EP LDS+HDAR RIYLVTP LFGTK +KGEMIIYP GT A+NHHHEGAEHF YI+ G  TA  SE+P P RAGDV+Y ++ ERH    D D ELVF E+FVP E +T+WVN    C W+PTGS+I+G  P R +KAHSSAE  +P  V
Sbjct:    1 MPVLFNYDSVEEICLQEGLYTRPLITPERVKSDCILLDRWSIKPNKKISINVNEKDLAWFQILEGQASLTGPDVSEDLTIDHVVFLPPNFSGTITSGEEEVAILYGRVPNADRYDPEFDPDALSFRCVNWREEPTLDSEHDARTRIYLVTPTLFGTKAIKGEMIIYPPGTSASNHHHEGAEHFQYIISGNATALLSEEPHPARAGDVLYNYEFERHNFINDSDEELVFVEYFVPAECKTIWVNPETTCAWIPTGSNIDGGDPSRVMKAHSSAEEVNPDGV 280          
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Match: A0A1Z9IZE2_9PROT (Cupin_2 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TMED167 TaxID=1986863 RepID=A0A1Z9IZE2_9PROT)

HSP 1 Score: 276 bits (706), Expect = 1.800e-89
Identity = 133/275 (48.36%), Postives = 172/275 (62.55%), Query Frame = 1
Query:   13 FNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVELNVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHSRGGASLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTPKLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASEQPFPVRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWLPTGSDINGEKPVREIKAHSSAEIASPADV 837
            FN+ +I A   G+ A R+ LL        NI LD   +  G  + L+VAAGDI W Q+L G   L+    + ++    + FLP      L    GA +L A VPDA RFD     NPP FR VDW +EPVLDS HDAR+RIY VTP+LF TK + GEMIIYP  T+A+NH+HE AEHF Y++ G G  + +E+P  +R GD++Y ++ ERHY + D     VF EFFVPGE++T+WV+D  VCTW PTG +I G  P REI  HSS  + +PADV
Sbjct:   12 FNKDTIDAETIGDGALRRVLLDDTITSNDNIRLDHWDLGSGSVISLSVAAGDIIWLQVLDGTVXLSGSEGTXTLGNQXLTFLPAGFEGRLEGXAGAQILHARVPDAIRFDPAFADNPPGFRIVDWSKEPVLDSTHDARQRIYFVTPQLFATKAISGEMIIYPPNTIASNHYHEDAEHFQYVISGEGVVYTNEEPHRLRPGDIIYNYERERHYFECDGMENFVFVEFFVPGEFKTIWVDDAPVCTWEPTGKNIQGGVPSREIGTHSSQPMETPADV 286          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10073.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4A4V6_9PROT1.090e-12060.93Cupin_2 domain-containing protein n=1 Tax=Betaprot... [more]
UPI00136B28AE4.340e-10655.87cupin domain-containing protein n=1 Tax=Propylenel... [more]
A0A1F4DMT7_9PROT4.250e-9453.44Cupin_2 domain-containing protein n=1 Tax=Betaprot... [more]
A0A327KCJ9_9HYPH2.180e-9348.73Cupin_2 domain-containing protein n=2 Tax=Rhodopla... [more]
UPI0017AFF8DA3.090e-9348.73Cupin domain-containing protein n=1 Tax=Rhodoplane... [more]
A0A327KME2_9HYPH7.160e-9248.55Cupin_2 domain-containing protein n=1 Tax=Rhodopla... [more]
A0A327KG55_9HYPH7.160e-9248.73Cupin_2 domain-containing protein n=1 Tax=Rhodopla... [more]
A0A848W026_9PROT6.200e-9149.82Cupin domain-containing protein n=1 Tax=Alphaprote... [more]
A0A1Z8XB02_9GAMM1.290e-9050.36Cupin_2 domain-containing protein n=1 Tax=Gammapro... [more]
A0A1Z9IZE2_9PROT1.800e-8948.36Cupin_2 domain-containing protein n=1 Tax=Rhodospi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10073contigP-wetherbeei_contig10073:818..1657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121946.AUAX01000004_gene599
PFAMsCupin_2
Model size840
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.95e-05
EggNOG OGsCOG1917@1|root,COG1917@2|Bacteria,2I5E6@201174|Actinobacteria
DescriptionAraC-like ligand binding domain
Cds size840
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.4148939-CDS-P-wetherbeei_contig10073:817..16571683185853.4148939-CDS-P-wetherbeei_contig10073:817..1657Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10073 818..1657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10073.1.1prot_P-wetherbeei_contig10073.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10073 818..1657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10073.1.1

>prot_P-wetherbeei_contig10073.1.1 ID=prot_P-wetherbeei_contig10073.1.1|Name=mRNA_P-wetherbeei_contig10073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
MAVCFNESSIAAAPFGERAFRQELLTPARLPGTNILLDRLVVSPGGTVEL
NVAAGDIGWFQMLAGQAELTRDGKSMSIDAAHVAFLPPASRCTLHSRGGA
SLLSASVPDAARFDAGLTANPPPFRTVDWQREPVLDSQHDARKRIYLVTP
KLFGTKVLKGEMIIYPKGTMAANHHHEGAEHFMYILRGRGTAWASEQPFP
VRAGDVVYYHDLERHYLKADDDSELVFGEFFVPGEYRTVWVNDNEVCTWL
PTGSDINGEKPVREIKAHSSAEIASPADV*
back to top

mRNA from alignment at P-wetherbeei_contig10073:818..1657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10073.1.1 ID=mRNA_P-wetherbeei_contig10073.1.1|Name=mRNA_P-wetherbeei_contig10073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig10073:818..1657+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGTATGCTTCAATGAGAGTTCTATTGCAGCCGCGCCCTTTGGCGA ACGCGCGTTCCGTCAGGAGCTTCTGACGCCGGCCCGCCTGCCCGGTACCA ACATCCTGCTCGACCGTCTCGTCGTGTCGCCCGGCGGAACAGTCGAATTG AACGTCGCGGCCGGCGACATCGGCTGGTTCCAGATGCTGGCCGGCCAGGC GGAGTTGACGCGCGATGGCAAGTCCATGAGCATCGATGCAGCGCATGTCG CGTTTCTTCCGCCCGCCAGCCGCTGCACGCTGCACTCTCGGGGTGGCGCC TCCCTCCTCAGCGCGTCGGTGCCGGACGCCGCCCGCTTCGATGCCGGCTT GACCGCGAACCCGCCGCCATTTCGCACGGTAGACTGGCAGCGCGAACCCG TGCTCGACAGCCAGCACGATGCCCGCAAGCGGATCTATCTCGTCACGCCG AAGCTGTTCGGCACCAAGGTCCTGAAAGGCGAGATGATCATCTACCCGAA AGGCACGATGGCAGCCAACCATCACCATGAAGGCGCCGAGCACTTCATGT ATATCTTGCGCGGTCGCGGCACTGCCTGGGCCAGCGAGCAGCCATTCCCG GTTCGTGCCGGCGATGTCGTCTACTATCACGACCTCGAGCGCCACTACCT CAAGGCCGACGACGACTCCGAACTGGTCTTCGGCGAGTTCTTCGTCCCCG GCGAATACCGGACGGTTTGGGTCAACGACAACGAGGTCTGCACTTGGCTG CCGACGGGCAGCGATATCAATGGCGAGAAGCCGGTCCGTGAAATCAAGGC GCACAGCTCCGCCGAGATCGCGAGCCCGGCGGATGTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10073:818..1657+

>mRNA_P-wetherbeei_contig10073.1.1 ID=mRNA_P-wetherbeei_contig10073.1.1|Name=mRNA_P-wetherbeei_contig10073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig10073:818..1657+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGTATGCTTCAATGAGAGTTCTATTGCAGCCGCGCCCTTTGGCGA
ACGCGCGTTCCGTCAGGAGCTTCTGACGCCGGCCCGCCTGCCCGGTACCA
ACATCCTGCTCGACCGTCTCGTCGTGTCGCCCGGCGGAACAGTCGAATTG
AACGTCGCGGCCGGCGACATCGGCTGGTTCCAGATGCTGGCCGGCCAGGC
GGAGTTGACGCGCGATGGCAAGTCCATGAGCATCGATGCAGCGCATGTCG
CGTTTCTTCCGCCCGCCAGCCGCTGCACGCTGCACTCTCGGGGTGGCGCC
TCCCTCCTCAGCGCGTCGGTGCCGGACGCCGCCCGCTTCGATGCCGGCTT
GACCGCGAACCCGCCGCCATTTCGCACGGTAGACTGGCAGCGCGAACCCG
TGCTCGACAGCCAGCACGATGCCCGCAAGCGGATCTATCTCGTCACGCCG
AAGCTGTTCGGCACCAAGGTCCTGAAAGGCGAGATGATCATCTACCCGAA
AGGCACGATGGCAGCCAACCATCACCATGAAGGCGCCGAGCACTTCATGT
ATATCTTGCGCGGTCGCGGCACTGCCTGGGCCAGCGAGCAGCCATTCCCG
GTTCGTGCCGGCGATGTCGTCTACTATCACGACCTCGAGCGCCACTACCT
CAAGGCCGACGACGACTCCGAACTGGTCTTCGGCGAGTTCTTCGTCCCCG
GCGAATACCGGACGGTTTGGGTCAACGACAACGAGGTCTGCACTTGGCTG
CCGACGGGCAGCGATATCAATGGCGAGAAGCCGGTCCGTGAAATCAAGGC
GCACAGCTCCGCCGAGATCGCGAGCCCGGCGGATGTCTGA
back to top