mRNA_P-wetherbeei_contig10070.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10070.1.1
Unique NamemRNA_P-wetherbeei_contig10070.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: A0A4D9CSI4_9STRA (Lactamase_B domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSI4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.450e-28
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIG-DIKVK 410
            M +  IP+L+DNYGYLV+D A   AA +DPVEP KV  A   A   +TH+LTTHKHWDHAGGN   + L P+V V+GG  D V ACT  V+ G+   IG D++V+
Sbjct:    2 MRVKEIPMLEDNYGYLVVDDATNQAAAIDPVEPDKVLAAASKAGALITHILTTHKHWDHAGGNSEMRKLLPDVPVLGGAGDGVAACTWQVQEGEVFRIGRDLRVE 106          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: A9NT10_PICSI (Lactamase_B domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NT10_PICSI)

HSP 1 Score: 116 bits (291), Expect = 5.100e-28
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIG 395
            M I  +P L+DNY YL++D+  G AAVVDPVEPQ +  A ++    +  VLTTH HWDHAGGNE  K L P + V GG  D V+ CT+ ++HGD+L++G
Sbjct:    1 MKIVPVPCLEDNYAYLIIDEDTGEAAVVDPVEPQNILQAAEVHGANIKFVLTTHHHWDHAGGNEELKKLVPGIEVYGGAKDHVKGCTVALEHGDELSLG 99          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: D7T4T3_VITVI (Lactamase_B domain-containing protein n=2 Tax=Vitis TaxID=3603 RepID=D7T4T3_VITVI)

HSP 1 Score: 115 bits (288), Expect = 1.410e-27
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIG 395
            M I  +P L+DNY YL++D++   AAVVDPVEPQKV  A     V +  VLTTH HWDHAGGNE  K L P + V GG +D+V+ CT P+++GD+L++G
Sbjct:    1 MKIVPVPCLEDNYSYLIIDESSKEAAVVDPVEPQKVLQAAYEYGVHLKLVLTTHHHWDHAGGNEKIKQLVPGIEVYGGSVDNVKGCTHPLQNGDKLSLG 99          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: A0A1D1XCS3_9ARAE (Hydroxyacylglutathione hydrolase cytoplasmic (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XCS3_9ARAE)

HSP 1 Score: 114 bits (284), Expect = 1.450e-27
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIG-DIKV 407
            M I+ IP L+DNY YLV+D+    AAVVDPVEP+KV  A   A  ++  VLTTH HWDHAGGN+  K L P + V GG ID+V+ CT  +++GD+L++G DI++
Sbjct:    1 MRISHIPCLEDNYAYLVVDERSKEAAVVDPVEPEKVLQAAREAGADLKLVLTTHHHWDHAGGNDKIKQLVPGIKVFGGSIDNVKGCTNKLENGDKLSLGSDIEI 104          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: UPI000539646C (hydroxyacylglutathione hydrolase cytoplasmic-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539646C)

HSP 1 Score: 111 bits (278), Expect = 2.350e-27
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIG 395
            M I  +P L+DNY YL++D++ G AAVVDPV+P+KV  + +   V++  VLTTH HWDHAGGNE  K L P + V GG +D V+ CT  V  GD+L++G
Sbjct:    1 MKIFHVPCLEDNYSYLIIDESTGDAAVVDPVDPEKVIASAEEHQVKIKFVLTTHHHWDHAGGNEKIKLLVPGIKVYGGSLDKVKGCTDAVDDGDKLSLG 99          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: A0A7S2RSP0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSP0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.360e-27
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   93 SAMHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIGDIKV 407
            S   +  +P+L+DNY Y+++D   G+AA VDP EP+KV  A +   V ++ VLTTHKHWDHAGGN     L P + +VGGEID+VEACTM V    +L +G+  +
Sbjct:    8 SGARVVPVPVLEDNYSYILIDDESGLAACVDPAEPEKVIQAAESLGVALSLVLTTHKHWDHAGGNTQMAQLIPGIDIVGGEIDEVEACTMKVSDDQELRLGETTI 112          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: D8RSK7_SELML (Lactamase_B domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RSK7_SELML)

HSP 1 Score: 114 bits (286), Expect = 2.710e-27
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIG-DIKVK 410
            M +  +P LDDNY YL++D A   AA VDPV+P+ V +A      +VT VLTTHKHWDHAGGN   K L P + V GG  D+VE CT P++HG +L +  D+K+K
Sbjct:    1 MEVIPVPCLDDNYAYLIIDGASKQAAAVDPVKPESVLSAAKKHGAQVTMVLTTHKHWDHAGGNNEIKKLVPGIKVFGGAKDNVEGCTDPLEHGAELELSKDVKIK 105          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: A0A1Y1HQF8_KLENI (GLYOXALASE n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HQF8_KLENI)

HSP 1 Score: 114 bits (285), Expect = 4.250e-27
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIGD-IKVK 410
            M I  +P L+DNYGYL++D A   AA VDPVEP KV  A     V +T VLTTH HWDHAGGNE      P + VVGG  D V ACT PV+ GD++++G  +KV+
Sbjct:    1 MRIVTVPQLEDNYGYLIIDDATKEAAAVDPVEPSKVTGAASREGVSITTVLTTHHHWDHAGGNEEMVKRIPGIKVVGGAHDRVAACTHPVEEGDEVSVGKGVKVR 105          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: A0A067FJK2_CITSI (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FJK2_CITSI)

HSP 1 Score: 110 bits (275), Expect = 5.250e-27
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIG 395
            M I  IP L+DNY YL++++    AAVVDPVEP+K+  A     V +T VLTTH HWDHAGGNE  K + P + V GG +D+V+ CT  V++GD+ +IG
Sbjct:    1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIG 99          
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Match: A0A8B8Q2B0_9MYRT (hydroxyacylglutathione hydrolase cytoplasmic n=3 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8Q2B0_9MYRT)

HSP 1 Score: 114 bits (284), Expect = 5.450e-27
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 3
Query:   99 MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHVLTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIG 395
            M I  IP LDDNY YL++D++   AAVVDP EP+KV  A     V++  VLTTH HWDHAGGNE  K L P + V GG ID+V+ACT  V++GD+L++G
Sbjct:    1 MKIHHIPCLDDNYAYLIIDESTREAAVVDPAEPEKVVKAAREHGVDLKLVLTTHHHWDHAGGNEKIKQLIPEIKVYGGSIDNVKACTDKVENGDKLSLG 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10070.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9CSI4_9STRA4.450e-2853.33Lactamase_B domain-containing protein n=2 Tax=Mono... [more]
A9NT10_PICSI5.100e-2851.52Lactamase_B domain-containing protein n=1 Tax=Pice... [more]
D7T4T3_VITVI1.410e-2753.54Lactamase_B domain-containing protein n=2 Tax=Viti... [more]
A0A1D1XCS3_9ARAE1.450e-2752.88Hydroxyacylglutathione hydrolase cytoplasmic (Frag... [more]
UPI000539646C2.350e-2751.52hydroxyacylglutathione hydrolase cytoplasmic-like ... [more]
A0A7S2RSP0_9STRA2.360e-2748.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8RSK7_SELML2.710e-2751.43Lactamase_B domain-containing protein n=3 Tax=Sela... [more]
A0A1Y1HQF8_KLENI4.250e-2753.33GLYOXALASE n=1 Tax=Klebsormidium nitens TaxID=1052... [more]
A0A067FJK2_CITSI5.250e-2751.52Lactamase_B domain-containing protein (Fragment) n... [more]
A0A8B8Q2B0_9MYRT5.450e-2755.56hydroxyacylglutathione hydrolase cytoplasmic n=3 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10070contigP-wetherbeei_contig10070:2..962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog29760.VIT_13s0067g00180.t01
PFAMsHAGH_C,Lactamase_B
Model size737
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00137
KEGG koko:K01069
KEGG ReactionR01736
KEGG Pathwayko00620,map00620
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Exons3
Evalue2e-30
EggNOG OGsCOG0491@1|root,KOG0813@2759|Eukaryota,37INA@33090|Viridiplantae,3GDZI@35493|Streptophyta
EC3.1.2.6
DescriptionHydroxyacylglutathione hydrolase
Cds size360
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.3031147-UTR-P-wetherbeei_contig10070:1..2801683185853.3031147-UTR-P-wetherbeei_contig10070:1..280Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10070 2..280 -
1683185853.3421364-UTR-P-wetherbeei_contig10070:864..9621683185853.3421364-UTR-P-wetherbeei_contig10070:864..962Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10070 865..962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.3147252-CDS-P-wetherbeei_contig10070:280..4111683185853.3147252-CDS-P-wetherbeei_contig10070:280..411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10070 281..411 -
1683185853.3234727-CDS-P-wetherbeei_contig10070:529..6531683185853.3234727-CDS-P-wetherbeei_contig10070:529..653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10070 530..653 -
1683185853.3322012-CDS-P-wetherbeei_contig10070:759..8641683185853.3322012-CDS-P-wetherbeei_contig10070:759..864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10070 760..864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10070.1.1prot_P-wetherbeei_contig10070.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10070 281..864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10070.1.1

>prot_P-wetherbeei_contig10070.1.1 ID=prot_P-wetherbeei_contig10070.1.1|Name=mRNA_P-wetherbeei_contig10070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MHITLIPLLDDNYGYLVMDQAKGVAAVVDPVEPQKVKTAVDIASVEVTHV
LTTHKHWDHAGGNEAFKGLTPNVIVVGGEIDDVEACTMPVKHGDQLNIGD
IKVKRDGRQVLPTLQKIAA*
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mRNA from alignment at P-wetherbeei_contig10070:2..962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10070.1.1 ID=mRNA_P-wetherbeei_contig10070.1.1|Name=mRNA_P-wetherbeei_contig10070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=961bp|location=Sequence derived from alignment at P-wetherbeei_contig10070:2..962- (Phaeothamnion wetherbeei SAG_119_79)
CTAAAAACACCACTACATTCGACTTGGCTGCTTCTCGTTGTCATCCTCTT TTCCACGACTGCCACTGGTTAGGCACCCTTCGCTCGGTCGCCTCCGCAAT GCATATCACTCTCATTCCGCTACTAGATGACAACTATGGGTACCTGGTTA TGGACCAAGCAAAAGGCGTGGCCGCGGTGGTGGATCCGGTCGAACCTCAA AAGGTGCGATGAGAAATCCAGCTGAGCGGCAGTTTCTTGCCTACTCAATA AATCTCCTGTCGATCGCTTACATAGCAACGCCTTGCTTGGTGCTATTTCT CACGCGCAGGTCAAGACGGCAGTGGATATTGCAAGCGTAGAAGTGACGCA CGTCCTCACAACGCACAAGCACTGGGATCATGCGGGTGGAAACGAGGCGT TCAAAGGGTTAACGCCCAACGTAATCGTCGTCGGTAGGTGGGAAATGCTT CGCTTGCATCGCTTTCAAACATTGCAAGAAGGGGCAGTTCGCTGCATAAA AGTTGCTTACTGAAATCTTGACGATGTTCATAATCCCCCCCCCTCGAGCA GGAGGCGAGATAGACGACGTCGAGGCCTGCACGATGCCTGTCAAACACGG CGACCAACTCAACATCGGAGACATCAAGGTAAAGCGCGATGGGAGGCAGG TGCTGCCGACGCTGCAGAAGATAGCAGCTTAGACTCGGTGCTTATGCTAC ACACCGAAGCGCAGTGGATTTAATTTGTCTATTACCCAGCATACTTTGAA CAGTTAAGCAGATGTCTGAACTGTGGCATTGTCTTGCACAACCTCGCCTT GCTCATGTTTTGCATACTTGGGTGGCGGCGGCGGCGGCGGCCGCGACGGC GGCAGCGGCCGCGACGGCGGCGGCGGTGTATTGGGCGGGTGGGCAGGTGA CATGTATCCACACGCCGGGGCACACGAAGGGCCACATTAGCTACTACTGC GAGCACAACGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10070:2..962-

>mRNA_P-wetherbeei_contig10070.1.1 ID=mRNA_P-wetherbeei_contig10070.1.1|Name=mRNA_P-wetherbeei_contig10070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig10070:2..962- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATATCACTCTCATTCCGCTACTAGATGACAACTATGGGTACCTGGT
TATGGACCAAGCAAAAGGCGTGGCCGCGGTGGTGGATCCGGTCGAACCTC
AAAAGGTCAAGACGGCAGTGGATATTGCAAGCGTAGAAGTGACGCACGTC
CTCACAACGCACAAGCACTGGGATCATGCGGGTGGAAACGAGGCGTTCAA
AGGGTTAACGCCCAACGTAATCGTCGTCGGAGGCGAGATAGACGACGTCG
AGGCCTGCACGATGCCTGTCAAACACGGCGACCAACTCAACATCGGAGAC
ATCAAGGTAAAGCGCGATGGGAGGCAGGTGCTGCCGACGCTGCAGAAGAT
AGCAGCTTAG
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