mRNA_P-wetherbeei_contig10041.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10041.1.1
Unique NamemRNA_P-wetherbeei_contig10041.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10041.1.1 vs. uniprot
Match: D8LKB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB6_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.150e-15
Identity = 47/93 (50.54%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 WLLCLLQLSFVKRFRSTIVHGGDGAVFSRLKALSAGDRLRKKQQQLSPLH-RRHRQLAMAVSTNLSCERSLYEELEGQLQVLREFLEDQEAEA 276
            W   +L+LSFV+++R+ IV+ GDG +FS LK  +  D L  K   +S  H R +++L M    N+SCE SLYEELEGQ+QVLREFL + E EA
Sbjct: 1268 WQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTN--DPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEA 1358
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BLAST of mRNA_P-wetherbeei_contig10041.1.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.540e-14
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 WLLCLLQLSFVKRFRSTIVHGGDGAVFSRLKALSAGDRLRKKQQQLS-PLHRRHRQLAMAVSTNLSCERSLYEELEGQLQVLREFLEDQEA 270
            WL  +L LS    +R  IV  G+G +F R+KALS  D L      L+  L RRHR+L+MA+ +NLSC+  L+EELEGQL +LREFL + +A
Sbjct:  611 WLAAVLGLSRSAAYRPLIVRHGEGIIFGRIKALSTHDPLLGGGDTLNVTLERRHRELSMAILSNLSCDGELHEELEGQLPLLREFLSEYDA 701
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BLAST of mRNA_P-wetherbeei_contig10041.1.1 vs. uniprot
Match: A0A6H5JX20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX20_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.170e-5
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  151 RRHRQLAMAVSTNLSCERSLYEELEGQLQVLREFLEDQEAEA 276
            R +++L M    N+SCE SLYEELEGQ+QVLREFL + E EA
Sbjct:  337 RAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEA 378
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10041.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKB6_ECTSI2.150e-1550.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT04_9STRA3.540e-1449.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JX20_9PHAE4.170e-561.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10041contigP-wetherbeei_contig10041:895..1170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categorysignal peptide
Exons1
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.360976-CDS-P-wetherbeei_contig10041:894..11701683185851.360976-CDS-P-wetherbeei_contig10041:894..1170Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10041 895..1170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10041.1.1prot_P-wetherbeei_contig10041.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10041 895..1170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10041.1.1

>prot_P-wetherbeei_contig10041.1.1 ID=prot_P-wetherbeei_contig10041.1.1|Name=mRNA_P-wetherbeei_contig10041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
WLLCLLQLSFVKRFRSTIVHGGDGAVFSRLKALSAGDRLRKKQQQLSPLH
RRHRQLAMAVSTNLSCERSLYEELEGQLQVLREFLEDQEAEA
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mRNA from alignment at P-wetherbeei_contig10041:895..1170-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10041.1.1 ID=mRNA_P-wetherbeei_contig10041.1.1|Name=mRNA_P-wetherbeei_contig10041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig10041:895..1170- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTGCTCTGCCTGCTGCAGCTGTCATTCGTCAAGCGTTTCCGCAGCAC
CATCGTGCACGGCGGCGATGGCGCCGTCTTCTCGCGCCTCAAAGCGCTGT
CCGCTGGCGATCGGCTGCGGAAGAAGCAGCAGCAGTTGTCGCCGCTGCAC
CGCCGCCACCGCCAGCTCGCCATGGCTGTGTCCACGAACCTGTCGTGCGA
GCGGTCGCTCTACGAAGAGCTGGAGGGGCAGCTGCAGGTGCTGCGAGAGT
TTCTTGAGGACCAAGAGGCCGAGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10041:895..1170-

>mRNA_P-wetherbeei_contig10041.1.1 ID=mRNA_P-wetherbeei_contig10041.1.1|Name=mRNA_P-wetherbeei_contig10041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig10041:895..1170- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTGCTCTGCCTGCTGCAGCTGTCATTCGTCAAGCGTTTCCGCAGCAC
CATCGTGCACGGCGGCGATGGCGCCGTCTTCTCGCGCCTCAAAGCGCTGT
CCGCTGGCGATCGGCTGCGGAAGAAGCAGCAGCAGTTGTCGCCGCTGCAC
CGCCGCCACCGCCAGCTCGCCATGGCTGTGTCCACGAACCTGTCGTGCGA
GCGGTCGCTCTACGAAGAGCTGGAGGGGCAGCTGCAGGTGCTGCGAGAGT
TTCTTGAGGACCAAGAGGCCGAGGCT
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