mRNA_P-wetherbeei_contig10040.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10040.1.1
Unique NamemRNA_P-wetherbeei_contig10040.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10040.1.1 vs. uniprot
Match: A0A813FY25_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FY25_POLGL)

HSP 1 Score: 131 bits (330), Expect = 9.650e-31
Identity = 73/199 (36.68%), Postives = 104/199 (52.26%), Query Frame = 3 
Query:  555 RCTIMVPIVTPPELTVDEESYKEWEDRPINIYFRGKNRSCHNPRAQLNRNLTFNLLGRAPGVIVSNNHAASPDAYFQELRDSKFCLVLACDDPQTSRFSDALAAGCIPIVINDHFRLHVAPFVRLMNYDAMIVTIAEADWQASGGTYLPSPVL-LRSGENARALRDLHDGMMEMRRALLWHHPHSLVATMALRTVQHEC 1148
            RCT+++P  +     + +  +++W  RP++IYFRG  R     R    R+    L+   PG  +        + Y +EL+ SKFCL+L  DDPQ SRF DALAAGCIP+V+ND F L+ APF   +NY    + I E+ +        P+ V+ L        LR +   ++E R+ LLW HP S  A  AL    H C
Sbjct:  210 RCTLLLPTKSFQLAWLADMPFEDWRRRPVSIYFRGNPRQVWGRRGDDLRDKAKPLMSVIPGANILGGGKVPAETYAEELQSSKFCLILQSDDPQISRFYDALAAGCIPVVVNDEFLLNAAPFADRLNYLGFALHIPESQFSD-----FPALVMHLTYNMQEARLRSMLAALLEARQILLWSHPQSRTAAWALSEASHTC 403
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BLAST of mRNA_P-wetherbeei_contig10040.1.1 vs. uniprot
Match: A0A835ZIG6_9STRA (Exostosin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIG6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.230e-9
Identity = 52/167 (31.14%), Postives = 71/167 (42.51%), Query Frame = 3 
Query:  510 AALCPPAPFFFILARRCTIMVP---IVTPPELTVDE---ESYKEWEDRPINIYFRG---KNRSCHNPRAQLNRNLTFNLLGR-----------------------------APGVIVSNNHAASPDAYFQELRDSKFCLVLACDDPQTSRFSDALAAGCIPIVINDH 896
            A LC P      L  +C + VP   ++ PP  T DE   +SY+EW  RPI +YFRG   + R+ H  R           L R                             A    V+    A PD + QE+  S+FC  +  D+ +TSR  +A+  GCIPI+I DH
Sbjct:  178 AGLCGPT-----LPEQCFLTVPFAGVLPPPGATSDELLAQSYEEWRQRPIRLYFRGQVDRRRAYHARRVLGGEVQALPSLARVIYASSSLMRSTYHRSCPDDWHECLDERPANDSCVACTSRAQPDTFAQEVSLSQFCFSIEGDNERTSRLHEAVRMGCIPIIIGDH 339
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10040.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A813FY25_POLGL9.650e-3136.68Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A835ZIG6_9STRA3.230e-931.14Exostosin family-domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10040contigP-wetherbeei_contig10040:2..2231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SXS2
PFAMsExostosin
Model size1232
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.74e-16
EggNOG OGs2F00R@1|root,2T18Y@2759|Eukaryota
DescriptionExostosin family
Cds size630
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.2930107-UTR-P-wetherbeei_contig10040:1..371683185851.2930107-UTR-P-wetherbeei_contig10040:1..37Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10040 2..37 -
1683185851.3336806-UTR-P-wetherbeei_contig10040:1665..22311683185851.3336806-UTR-P-wetherbeei_contig10040:1665..2231Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10040 1666..2231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.30264-CDS-P-wetherbeei_contig10040:37..3321683185851.30264-CDS-P-wetherbeei_contig10040:37..332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10040 38..332 -
1683185851.3097994-CDS-P-wetherbeei_contig10040:887..10661683185851.3097994-CDS-P-wetherbeei_contig10040:887..1066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10040 888..1066 -
1683185851.3179555-CDS-P-wetherbeei_contig10040:1509..16651683185851.3179555-CDS-P-wetherbeei_contig10040:1509..1665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10040 1510..1665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10040.1.1prot_P-wetherbeei_contig10040.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10040 38..1665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10040.1.1

>prot_P-wetherbeei_contig10040.1.1 ID=prot_P-wetherbeei_contig10040.1.1|Name=mRNA_P-wetherbeei_contig10040.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MVPIVTPPELTVDEESYKEWEDRPINIYFRGKNRSCHNPRAQLNRNLTFN
LLGRAPGVIVSNNHAASPDAYFQELRDSKFCLVLACDDPQTSRFSDALAA
GCIPIVINDHFRLHVAPFVRLMNYDAMIVTIAEADWQASGGTYLPSPVLL
RSGENARALRDLHDGMMEMRRALLWHHPHSLVATMALRTVQHECLSSHTR
DAGLGLQPV*
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mRNA from alignment at P-wetherbeei_contig10040:2..2231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10040.1.1 ID=mRNA_P-wetherbeei_contig10040.1.1|Name=mRNA_P-wetherbeei_contig10040.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2230bp|location=Sequence derived from alignment at P-wetherbeei_contig10040:2..2231- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTACTGGACGCCGGCACTGGTGCCGGCGCGGACATCGAACACATTCT
TCGTCTACCCAATGTTCCTCCGCAGACACCAGTGGCGGTGAGCGAGAAGT
GGCTGAAAGCCGGAAGCGCGCAGGGCCGAGTCTGACCCATTCTGTGCGCG
GGCTGGCTTTCCACTTGCCATTAACTTGCTGCGGAGCTTTTGTTGCTATA
CCTCAGTTCTCTCTGCGCCCTCGACCGCGACCGATCGGCACATTATAAGG
CAAATTATCGAAGCGTCTTTTGGGTTTTCCGGTCCGTTTTGGGTCATTTT
CTGACATCGTGGGGCCCGAAATACCGAGGAGCCGGATTTGTTTGGGAGGA
TTTGCTGCTCTCCCCATATTTAGCCAGTCGGCCAATCGCCTTCGCGGTGG
ACCGCGTCTCGTAGAGGAGCCCGCGCCGTGGTTTATGCCCTTCTGACTTT
GGACCTCGGCAAACAAGCGTCTAATCTGACATCTGGACCTATACCCGGGC
CGCCAGCCTGCCGCGCTCTGCCCACCCGCCCCTTTTTTTTTCATTCTCGC
CCGAAGGTGCACAATAATGGTGCCCATCGTCACGCCGCCGGAGCTGACCG
TGGATGAGGAGAGCTACAAGGAGTGGGAGGATCGGCCGATCAACATTTAC
TTCCGCGGCAAGAACCGCTCCTGCCACAATCCCCGGGCGCAGCTGAACCG
CAACCTCACGTTTAACCTCTTGGTTAGTGAGACAGTTTCGGGCGGGGGGC
ACTGGCTGCCGCTGCTGGCGGCTGCCGTTGCCGGCGGGGGACATCGTCAT
TGCCAGTGCCAGCCGCCATCGTTTCCGCTGCCAGTCCTCAGCCGACGCCG
CCGCTGGTGCCGTTGCCAGCCGTCGCCGCTACTGCGGCCACGCCTGTCTG
CCCGCGATTGTGTTTTTATGTCGCACAAGCAGCGACACGCAGCCGTCAAC
TGGCCGCTGGGTCGCTGCTCGGCTGTCGTTTCTTTCTGCGATTACGTGTC
GATCTTCCTCCTCTCTTTTCTGCCGGTTCACACTACACTCTTGCGGTCCC
TAAATGCAACTTAAAACATATCTGACACTGCTGATATTTTTGTTTTTCCT
TGCTTTCTTTTGAACCTTTTTGTCCCCTTTCCCGCCCCCTCGCGGCCTGA
CTTATTTTACCTCAGGGCCGCGCCCCGGGAGTCATTGTGTCGAACAACCA
CGCGGCGTCGCCGGACGCGTACTTCCAGGAGCTCCGGGATTCCAAGTTCT
GCCTCGTCTTGGCCTGCGACGACCCGCAGACCAGCCGCTTCTCCGACGCC
CTCGCTGCCGGCTGCATCCCCATCGTCATCAACGACCACTTTAGGCGAGA
GACCCGGCACTCTCCTCGCTTTTTCTTTCGGAGCCGATTTTTGGGTTCTG
TTTTTAATGCTTTCTCTTATAGAAATTATTTTCCTTTTAATGTCTGTTCT
GAAATAGAATATTAGTACTGTTCAGTTTTCTTTGGCATTACTCTTCTGGG
CGAAAAGATAGGCGGCAGGATCGGTTCGAATTGGATCGGCTCGGATCAGT
TTGATCGGATCAGGCAATGCGGGAAGTCCAGGTGAACGGGGAGATGGGGC
AGGGGGGGGTTTTCCATAGGCATAGAGCTTTGTCGGGCGGTTTGTGCGGT
TTGCATATTGTGGGAATGTTAATTAGTTGCGGCCCTTTCAAGGGGAAGGC
TCCTGAGTTGGACGCTGCGTTACGCATTGCCAGTGCAATCCACACGGGCC
ACGCAGGCAATGGCGCCGACATTGCCTCGATTGCGTCTTCTGTTCTCCCC
CAGAACGGCGGGTCTGACTGGCCGTGCGCCCTGCAAATCGCAAGAAAAAC
CCGTTCCAAAACTTCTTTGTAACCGCGCGAAACTGCCCAATACCGCCAGG
CTCCACGTGGCACCGTTCGTGCGGCTGATGAACTACGACGCCATGATCGT
CACCATTGCTGAGGCGGACTGGCAGGCCAGCGGCGGCACATATTTGCCGT
CGCCGGTGCTGCTTCGGTCGGGGGAGAACGCGCGTGCGCTCCGGGATTTG
CACGACGGCATGATGGAGATGCGGCGAGCGCTGCTGTGGCACCACCCGCA
CTCTCTCGTGGCGACGATGGCGCTGCGGACGGTCCAGCACGAGTGTCTGT
CGTCCCACACACGCGACGCCGGTCTGGGCCTGCAGCCCGTGTAGAGCCAG
CGAAGGGGGGGGCGCGATGGACGAACGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10040:2..2231-

>mRNA_P-wetherbeei_contig10040.1.1 ID=mRNA_P-wetherbeei_contig10040.1.1|Name=mRNA_P-wetherbeei_contig10040.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig10040:2..2231- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCCCATCGTCACGCCGCCGGAGCTGACCGTGGATGAGGAGAGCTA
CAAGGAGTGGGAGGATCGGCCGATCAACATTTACTTCCGCGGCAAGAACC
GCTCCTGCCACAATCCCCGGGCGCAGCTGAACCGCAACCTCACGTTTAAC
CTCTTGGGCCGCGCCCCGGGAGTCATTGTGTCGAACAACCACGCGGCGTC
GCCGGACGCGTACTTCCAGGAGCTCCGGGATTCCAAGTTCTGCCTCGTCT
TGGCCTGCGACGACCCGCAGACCAGCCGCTTCTCCGACGCCCTCGCTGCC
GGCTGCATCCCCATCGTCATCAACGACCACTTTAGGCTCCACGTGGCACC
GTTCGTGCGGCTGATGAACTACGACGCCATGATCGTCACCATTGCTGAGG
CGGACTGGCAGGCCAGCGGCGGCACATATTTGCCGTCGCCGGTGCTGCTT
CGGTCGGGGGAGAACGCGCGTGCGCTCCGGGATTTGCACGACGGCATGAT
GGAGATGCGGCGAGCGCTGCTGTGGCACCACCCGCACTCTCTCGTGGCGA
CGATGGCGCTGCGGACGGTCCAGCACGAGTGTCTGTCGTCCCACACACGC
GACGCCGGTCTGGGCCTGCAGCCCGTGTAG
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