mRNA_P-wetherbeei_contig1004.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1004.2.1
Unique NamemRNA_P-wetherbeei_contig1004.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1004.2.1 vs. uniprot
Match: A0A6H5KJI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.090e-11
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:    1 LALDSRWRTSALQRGAVTHATLRSRWSQASRARVAEHWEDYWCHSVSPVFFGRSA---------RPRRTKEEAAVARAAAT 216
            +AL +    S L  G +TH    +RW  ASR R+   WE YWCHS+SPVFFGRS            RR +EE A A+ AAT
Sbjct:  695 IALQAAKEGSELLSGGLTHTVTSARWCPASRCRLLSTWEGYWCHSISPVFFGRSVLGRRITKDMARRRQEEEVATAQLAAT 775
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BLAST of mRNA_P-wetherbeei_contig1004.2.1 vs. uniprot
Match: D7G5G5_ECTSI (Serine/threonine-protein kinase Nek3 (NimA-related protein kinase 3) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G5_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.040e-11
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:    1 LALDSRWRTSALQRGAVTHATLRSRWSQASRARVAEHWEDYWCHSVSPVFFGRSA---------RPRRTKEEAAVARAAAT 216
            +AL +    S L  G +TH    +RW   SR RV   WE YWCHS+SPVFFGRS            RR +E+AA A+ AAT
Sbjct:  276 IALQAAREGSELLSGGLTHTVTSARWCPTSRGRVLSTWEGYWCHSLSPVFFGRSVLGRHMTKEMARRRQEEDAAAAQLAAT 356
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1004.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJI9_9PHAE1.090e-1145.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5G5_ECTSI2.040e-1145.68Serine/threonine-protein kinase Nek3 (NimA-related... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1004contigP-wetherbeei_contig1004:7316..7531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size216
Hectar predicted targeting categorymitochondrion
Exons1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.2702959-CDS-P-wetherbeei_contig1004:7315..75311683185851.2702959-CDS-P-wetherbeei_contig1004:7315..7531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1004 7316..7531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1004.2.1prot_P-wetherbeei_contig1004.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1004 7316..7531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1004.2.1

>prot_P-wetherbeei_contig1004.2.1 ID=prot_P-wetherbeei_contig1004.2.1|Name=mRNA_P-wetherbeei_contig1004.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
LALDSRWRTSALQRGAVTHATLRSRWSQASRARVAEHWEDYWCHSVSPVF
FGRSARPRRTKEEAAVARAAAT
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mRNA from alignment at P-wetherbeei_contig1004:7316..7531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1004.2.1 ID=mRNA_P-wetherbeei_contig1004.2.1|Name=mRNA_P-wetherbeei_contig1004.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig1004:7316..7531+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCTTGACTCTCGGTGGCGCACTTCGGCGCTGCAGCGGGGCGCCGT
CACACACGCCACGCTGCGCTCGCGGTGGAGCCAAGCCAGCCGCGCCCGCG
TGGCCGAGCATTGGGAGGACTACTGGTGCCACAGCGTCTCCCCCGTCTTC
TTCGGCCGAAGCGCCAGGCCCCGGCGGACAAAGGAGGAGGCGGCTGTGGC
GAGAGCCGCGGCAACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1004:7316..7531+

>mRNA_P-wetherbeei_contig1004.2.1 ID=mRNA_P-wetherbeei_contig1004.2.1|Name=mRNA_P-wetherbeei_contig1004.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig1004:7316..7531+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCTTGACTCTCGGTGGCGCACTTCGGCGCTGCAGCGGGGCGCCGT
CACACACGCCACGCTGCGCTCGCGGTGGAGCCAAGCCAGCCGCGCCCGCG
TGGCCGAGCATTGGGAGGACTACTGGTGCCACAGCGTCTCCCCCGTCTTC
TTCGGCCGAAGCGCCAGGCCCCGGCGGACAAAGGAGGAGGCGGCTGTGGC
GAGAGCCGCGGCAACG
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