mRNA_P-wetherbeei_contig10038.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10038.1.1
Unique NamemRNA_P-wetherbeei_contig10038.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: D7G2Z0_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Z0_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.190e-40
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    7 RQQLPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDESEADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQK 354
            R QLPP+WVDKVD VEEDVR IQ ++R+LSALHTKRLMV+FDESEA++ER++E  T EVT LFR AE+QLK +M +  G     LT AE TVRNNIQRATARKLQ+LS  FRTSQK
Sbjct:   53 RHQLPPLWVDKVDGVEEDVRLIQLKLRELSALHTKRLMVTFDESEAERERDVEDATREVTALFRRAERQLKHLMGESAG-----LTPAEATVRNNIQRATARKLQSLSGGFRTSQK 163          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: A0A836CM56_9STRA (Soluble NSF attachment protein receptor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM56_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.780e-37
Identity = 77/117 (65.81%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    7 RQQLPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDE-SEADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQK 354
            R QLPP WV++VDRV+ DVR IQ +MR LS LHTKRLMVSFD+ SE  KE+EIE  T E+TQ+FRHAE++LK ++ DG G      TAA+ TVR NIQRATARKLQALS AFR++QK
Sbjct:   50 RSQLPPAWVERVDRVDADVRTIQLKMRALSGLHTKRLMVSFDDVSEQHKEKEIELMTQEITQIFRHAERELKAIVGDGGGAR----TAADATVRGNIQRATARKLQALSIAFRSAQK 162          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: A0A835YLG5_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLG5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.160e-34
Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 1
Query:   19 PPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDE-SEADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQK 354
            PPVWV+KVD V+ D+R+IQ +MR+LSALHTKRLMV+FD+ SE  KER+IE  T E+TQ+FRHAE++LK +M +G G GR E   AE TVR N+Q+ATARKLQ LS AFR+SQK
Sbjct:   54 PPVWVEKVDNVDADLRKIQMKMRELSALHTKRLMVTFDDASEQSKERDIEFMTQEITQIFRHAERELKKIMTEG-GGGRTE---AEATVRTNLQKATARKLQNLSMAFRSSQK 162          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: A0A7S3GW24_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GW24_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.020e-28
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    4 ARQQLPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDESEADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQK 354
            A+  LPP WVD+++  EEDV +IQ R+R+LSALHTKRLMV+F+  EA +EREI+ +T E+T LF HAE  LK     G+    P L+ A+ TVR N+Q + ARK+Q LS +FR++QK
Sbjct:   47 AKNSLPPAWVDQIEAAEEDVTKIQARIRELSALHTKRLMVNFETDEAHQEREIDGKTREITDLFHHAENVLKRF---GKQSEDPNLSVADRTVRKNMQMSMARKIQGLSMSFRSTQK 160          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: A0A7S0SYL7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SYL7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.380e-25
Identity = 58/116 (50.00%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    4 ARQQLPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDESEADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQ 351
            AR  LPP WVDK+  ++E + +IQ ++++L+ALH+KRLMV+F+  E  +EREI+ +T E+T LFR AEK L+     G      + +A EL VRNNIQR+ A+KLQ+LS +FR SQ
Sbjct:   54 ARNTLPPAWVDKIQLIDEYINKIQPKIKELNALHSKRLMVNFETDELQQEREIDIKTQEITTLFRSAEKLLQKFSTQGD---ENKTSAEELKVRNNIQRSNAKKLQSLSQSFRQSQ 166          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: A0A7S2SRN9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRN9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.960e-24
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    7 RQQLPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDESEADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQK 354
            R  LPP WVD  D++E D+R++   + +L+ALHTKRLMV+FDESEA ++REI+++T  +T  FRH E  LK V ND  G        ++  VR NIQRATA+KLQ  S  FR+ QK
Sbjct:   46 RVNLPPHWVDTFDQMELDLRQLDALVEELAALHTKRLMVTFDESEARRDREIQSKTRAITDCFRHMEVSLKRVANDSDGD------ESDAKVRGNIQRATAKKLQERSHKFRSMQK 155          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: F0Y7H9_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7H9_AURAN)

HSP 1 Score: 97.8 bits (242), Expect = 4.200e-22
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   16 LPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDES-EADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQK 354
            LPPVWVD V+RVE DV +I+R  RDL+ALHTKRLMVSFD++ EA  + EI  +  E T+LFR  E  LK V       G  +L+ +E T+R+NIQR+ A ++QAL+  FR +QK
Sbjct:   57 LPPVWVDLVERVEGDVLKIERATRDLAALHTKRLMVSFDDAGEAALDDEIAAKQREATKLFRACESSLKRVA----AHGGDDLSDSERTIRSNIQRSVAMRIQALNTDFRKAQK 166          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: A0A7S3XU54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU54_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 5.470e-22
Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   34 DKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDES-EADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQK 354
            D VD+VEED+R+IQ ++R L+ LHT+RLMV+FDE  EAD++REI+  TA VT LFRHAE  L+ V  +G+  G      A+  VR NIQR+ ARKLQ+LS  FR SQK
Sbjct:    1 DMVDQVEEDIRQIQEKIRALADLHTQRLMVTFDEGHEADRDREIDQATAAVTGLFRHAEGVLRQVGTEGKAAGGGG-GQADARVRENIQRSLARKLQSLSMNFRNSQK 107          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: A0A7S3JZH1_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZH1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.810e-22
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   16 LPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDES-EADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQ 351
            LPP+WVD VD VE D+ +I++ MRDL A+HTKRLMVSFD++ EA  ++EIE +T E T+LFR  E  LK +   G      +L+ +E T+R NIQR  A ++Q L+  FR SQ
Sbjct:   60 LPPIWVDLVDSVESDIGKIEKAMRDLQAVHTKRLMVSFDDANEAAMDQEIEGKTREATRLFRSCESSLKRIALTGN-----DLSDSERTIRANIQRGMALRIQRLNQDFRRSQ 167          
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Match: A0A4D9D7A2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7A2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.250e-21
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    4 ARQQLPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDESEADKEREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQRATARKLQALSAAFRTSQK 354
            AR QLPP WVD VDRV+    +I+ +M++L ALH KRL+V FD+SEA +ER+I+  T E+T + R AE  LK +     G G       E  V  N+Q++ A+++QALS  FR SQK
Sbjct:   52 ARMQLPPAWVDLVDRVDTLTAQIEAKMKELEALHRKRLLVGFDDSEAARERDIDFMTQEITGMLREAESALKQMG----GGGADXXXGTEKLVTRNVQKSMAKRIQALSIEFRASQK 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10038.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Z0_ECTSI3.190e-4069.83Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A836CM56_9STRA7.780e-3765.81Soluble NSF attachment protein receptor (Fragment)... [more]
A0A835YLG5_9STRA1.160e-3465.49Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S3GW24_9STRA7.020e-2852.99Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SYL7_9STRA6.380e-2550.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2SRN9_9STRA2.960e-2450.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y7H9_AURAN4.200e-2252.63t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S3XU54_HETAK5.470e-2256.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3JZH1_9STRA8.810e-2250.44Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A4D9D7A2_9STRA4.250e-2147.01t-SNARE coiled-coil homology domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10038contigP-wetherbeei_contig10038:1422..2085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G2Z0
Preferred nameSTX16
PFAMsSNARE,Syntaxin
Model size357
Max annot lvl2759|Eukaryota
KEGG koko:K08489,ko:K09611
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0000323,GO:0001505,GO:0002790,GO:0002831,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005773,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005886,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006665,GO:0006673,GO:0006675,GO:0006687,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006896,GO:0006897,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019637,GO:0019905,GO:0022406,GO:0023052,GO:0023061,GO:0031090,GO:0031201,GO:0031224,GO:0031300,GO:0031301,GO:0031302,GO:0031303,GO:0031347,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032101,GO:0032258,GO:0032527,GO:0032588,GO:0032940,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048471,GO:0048489,GO:0048583,GO:0050789,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072665,GO:0080134,GO:0090161,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140056,GO:1900150,GO:1901135,GO:1901564,GO:1903509
Exons2
Evalue5.24e-41
EggNOG OGsCOG5325@1|root,KOG0809@2759|Eukaryota
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-09_004340.1
DescriptionSNAP receptor activity
Cds size357
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.1361368-CDS-P-wetherbeei_contig10038:1421..15711683185851.1361368-CDS-P-wetherbeei_contig10038:1421..1571Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10038 1422..1571 +
1683185851.1518946-CDS-P-wetherbeei_contig10038:1878..20851683185851.1518946-CDS-P-wetherbeei_contig10038:1878..2085Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10038 1879..2085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10038.1.1prot_P-wetherbeei_contig10038.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10038 1422..2085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10038.1.1

>prot_P-wetherbeei_contig10038.1.1 ID=prot_P-wetherbeei_contig10038.1.1|Name=mRNA_P-wetherbeei_contig10038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MARQQLPPVWVDKVDRVEEDVREIQRRMRDLSALHTKRLMVSFDESEADK
EREIETRTAEVTQLFRHAEKQLKLVMNDGQGPGRPELTAAELTVRNNIQR
ATARKLQALSAAFRTSQKV
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mRNA from alignment at P-wetherbeei_contig10038:1422..2085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10038.1.1 ID=mRNA_P-wetherbeei_contig10038.1.1|Name=mRNA_P-wetherbeei_contig10038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=664bp|location=Sequence derived from alignment at P-wetherbeei_contig10038:1422..2085+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGGCAGCAGCTGCCCCCGGTGTGGGTTGACAAGGTGGACCGCGT GGAGGAGGATGTGCGCGAGATCCAACGGCGCATGCGCGATTTGTCGGCGC TCCACACCAAGCGCCTCATGGTGTCCTTTGACGAGTCCGAGGCCGATAAG GTGAAGAGAAGACGCGGCTGTTCTTTTACGGCTTCCCCTGCTTTCTTTGT TCTTTTCTTGAAAAGAAGGTGGGCATACCGCACAATTGGGATATTTGTTG GAAAGTTTTCACTTCTCCCTTTTCTTTTACACCCTGGGGGCTTAATTTTG GAAACGATCGGATAGGGTTGAAAACCGCTAGAGCCTTTTGACGTGGCCTG ACCTGAGTTTGTGCAAGCCTCCTCATCCTAAAGCAATTCAGACAGCAGCT GCAAAGGAACTGCTTTTTCAACACTTTTTTCCCTTTCTGCGGCGCTTTTC AACACAGGAGCGCGAGATTGAGACGCGCACAGCGGAGGTCACCCAGCTGT TCCGCCACGCTGAGAAGCAGCTCAAGCTGGTCATGAACGACGGGCAGGGA CCGGGCCGCCCCGAACTCACGGCCGCCGAGTTGACGGTGCGCAACAATAT CCAGCGGGCGACAGCGCGCAAGCTGCAGGCGCTCTCGGCGGCTTTCCGCA CCAGCCAAAAGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10038:1422..2085+

>mRNA_P-wetherbeei_contig10038.1.1 ID=mRNA_P-wetherbeei_contig10038.1.1|Name=mRNA_P-wetherbeei_contig10038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig10038:1422..2085+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGGCAGCAGCTGCCCCCGGTGTGGGTTGACAAGGTGGACCGCGT
GGAGGAGGATGTGCGCGAGATCCAACGGCGCATGCGCGATTTGTCGGCGC
TCCACACCAAGCGCCTCATGGTGTCCTTTGACGAGTCCGAGGCCGATAAG
GAGCGCGAGATTGAGACGCGCACAGCGGAGGTCACCCAGCTGTTCCGCCA
CGCTGAGAAGCAGCTCAAGCTGGTCATGAACGACGGGCAGGGACCGGGCC
GCCCCGAACTCACGGCCGCCGAGTTGACGGTGCGCAACAATATCCAGCGG
GCGACAGCGCGCAAGCTGCAGGCGCTCTCGGCGGCTTTCCGCACCAGCCA
AAAGGTT
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