mRNA_P-wetherbeei_contig10036.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10036.1.1
Unique NamemRNA_P-wetherbeei_contig10036.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10036.1.1 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.140e-52
Identity = 112/247 (45.34%), Postives = 155/247 (62.75%), Query Frame = 1 
Query:  100 AQISWALEQAVHELGLAGRDSAAEKNWREMVLPDHLLQLARNDVRRYCGARGALKQSICTMSVTVEQAEEFFQLWPTLKSLGSTGTGPADWLSVLNLLCFGVAFAEGLVAPPPLGLASXXXXXXXXXXRGSVNANAVARQLLAETLSGDGRHMDLWMRDLSPPELSDVLRLVAKSAARLEKLTVGSSHTGGAGIGSFLAGAPSLREVELEWEGVRDVSVLASGLRHHPRLARLSLTHNFVGQAGAAQ 840
            ++I  A+ +A+  LG+ G  S  E+NWR ++ P  +L+  R DV +Y  A+GALKQ++C++SV+++QAEEFF +W  L SLG   +   D L+VLNLL F V+ A+G   P                       +    ++LAE+L   G H+DLWM+DLSP +  ++LR V+ +  +L  LTVGSSHT GAG+GSFL G PSLRE+ELEWEGVRD+S +A  L  H  L RL+LTHN +G  GA Q
Sbjct:  358 SRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVLRKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWKYLASLGPCASN--DRLAVLNLLVFAVSVADGYCCPR--------------------RPSDFVGRVLAESLVTPG-HLDLWMKDLSPDDSRNILRAVSAAGKKLSILTVGSSHTAGAGVGSFLRGHPSLRELELEWEGVRDLSSIAQALGEHKSLTRLNLTHNEIGPRGALQ 581
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BLAST of mRNA_P-wetherbeei_contig10036.1.1 vs. uniprot
Match: A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.630e-32
Identity = 99/263 (37.64%), Postives = 124/263 (47.15%), Query Frame = 1 
Query:  157 DSAAEKNWREMVLPDHLLQLARNDVRRYCGARGALKQSICTMSVTVEQAEEFFQLWPTL-KSLGSTGTGPADWLSVLNLLCFGVAFAEGLVAPPPLGLASXXXXXXXXXXRGSVNANAVARQLLAETLS------GDGRHMDLWMR-------------DLSPPELSDVLRLV---------------AKSAARLEKLTVGSSHTGGAGIGSFLAGAPSLREVELEWEGVRDVSVLASGLRHHPRLARLSLTHNFVGQAGAAQ 840
            +    KNW    L + L+   R DV   C A GAL+Q+IC+MSVT  QA EF + W  L +   +     A+ L+VLNLL FGVAF E  +APP                     A   A   L E+L       G G  +DLWM              DLSP +L  VL                   K    + +LTVGSSH+GGAG+G FLA   +L  +E+EWE VRDV  +  GLRH P L  L+LTHN +G  G  Q
Sbjct:  279 EDPVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPP--------------------RAPGYAEATLLESLDAIPEGEGGGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQ 521
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10036.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5T8_ECTSI1.140e-5245.34Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835Z0E5_9STRA5.630e-3237.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10036contigP-wetherbeei_contig10036:670..2422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5T8
PFAMsLRR_6
Model size1753
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.14e-53
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-12_009090.1
Descriptioninterleukin-8 biosynthetic process
Cds size1635
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.0901403-UTR-P-wetherbeei_contig10036:669..7601683185851.0901403-UTR-P-wetherbeei_contig10036:669..760Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10036 670..760 -
1683185851.1092327-UTR-P-wetherbeei_contig10036:2395..24221683185851.1092327-UTR-P-wetherbeei_contig10036:2395..2422Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10036 2396..2422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.1004539-CDS-P-wetherbeei_contig10036:760..23951683185851.1004539-CDS-P-wetherbeei_contig10036:760..2395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10036 761..2395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10036.1.1prot_P-wetherbeei_contig10036.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10036 761..2395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10036.1.1

>prot_P-wetherbeei_contig10036.1.1 ID=prot_P-wetherbeei_contig10036.1.1|Name=mRNA_P-wetherbeei_contig10036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=545bp
MLDGGSSGADGGAGGGGGVMGVAAAQISWALEQAVHELGLAGRDSAAEKN
WREMVLPDHLLQLARNDVRRYCGARGALKQSICTMSVTVEQAEEFFQLWP
TLKSLGSTGTGPADWLSVLNLLCFGVAFAEGLVAPPPLGLASSSGGGGGG
GGRGSVNANAVARQLLAETLSGDGRHMDLWMRDLSPPELSDVLRLVAKSA
ARLEKLTVGSSHTGGAGIGSFLAGAPSLREVELEWEGVRDVSVLASGLRH
HPRLARLSLTHNFVGQAGAAQLAEALKWNTTLTELDLRENCIGSVGLKQL
AIALALNGTLRTLHVQDNGVGDDGAIDITEALMRNTTLAVVSLDGNDITD
VGGRTLLIAVRENPALTQLSLGRNQLSDLLKEQLREVWDAREWPRPESAG
SGAGSGSGSGVSPPALPSTLPSMAFGRAGCGAVPPPPPSGLSGASPDGGG
LRRASTGATVASVKQKAAGMLLSPLAINRLHWDSSPSAGGAAAAGSAFRG
GQQQLSNNDGGGGGDALPAPVPRIIGFLSQTTRPQLIKPPVPVD*
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mRNA from alignment at P-wetherbeei_contig10036:670..2422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10036.1.1 ID=mRNA_P-wetherbeei_contig10036.1.1|Name=mRNA_P-wetherbeei_contig10036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1753bp|location=Sequence derived from alignment at P-wetherbeei_contig10036:670..2422- (Phaeothamnion wetherbeei SAG_119_79)
ACGGCCGTCGCCGCCGGCGCCGCCGCCATGCTGGACGGCGGCAGTAGTGG
CGCCGACGGCGGCGCCGGGGGCGGCGGCGGCGTCATGGGCGTGGCGGCTG
CGCAAATCTCGTGGGCACTGGAGCAGGCGGTGCACGAGCTGGGCCTGGCC
GGGCGGGACAGCGCGGCCGAAAAGAACTGGCGGGAGATGGTTTTACCGGA
TCACCTCTTGCAGCTGGCGCGCAACGACGTCCGGCGCTACTGCGGTGCCC
GCGGCGCGCTCAAACAGTCCATCTGCACCATGTCGGTCACGGTAGAGCAG
GCTGAAGAGTTCTTCCAGCTGTGGCCGACGTTAAAGTCGCTGGGTTCCAC
CGGGACGGGCCCGGCCGACTGGCTTTCCGTGCTCAATCTGCTCTGCTTTG
GCGTCGCCTTTGCCGAGGGTCTGGTGGCGCCGCCGCCGCTTGGGCTGGCG
TCGTCGTCCGGCGGCGGTGGCGGCGGCGGCGGTCGGGGCAGCGTCAATGC
CAACGCGGTGGCACGGCAGCTGCTGGCGGAGACGCTGTCGGGCGACGGAC
GCCACATGGACCTCTGGATGCGCGATTTGTCCCCACCGGAGCTTTCTGAC
GTGCTCCGGCTGGTCGCAAAGTCTGCCGCCCGCCTCGAGAAGCTGACGGT
TGGCAGCTCCCACACGGGCGGCGCCGGCATCGGCAGCTTTCTGGCGGGCG
CCCCGTCGCTGCGGGAGGTGGAGCTGGAGTGGGAAGGGGTTCGCGACGTG
TCTGTGCTGGCCAGCGGGCTCCGGCACCACCCGCGGCTGGCGCGGCTGAG
CCTGACGCACAACTTCGTCGGGCAGGCGGGGGCGGCTCAGCTGGCGGAGG
CGCTCAAGTGGAACACGACGCTGACGGAGCTGGACTTGAGAGAGAATTGC
ATCGGCTCTGTCGGGCTCAAGCAGCTGGCAATCGCGCTGGCGCTGAACGG
GACGCTGCGGACGCTGCACGTGCAGGACAACGGCGTCGGCGACGACGGCG
CTATTGACATCACCGAGGCGCTAATGCGCAACACAACGCTGGCGGTGGTG
TCACTCGACGGCAACGACATTACTGACGTCGGCGGAAGGACACTTTTGAT
CGCCGTCCGCGAGAACCCGGCGCTGACGCAGCTCAGCCTCGGGCGGAACC
AGCTGTCGGACTTGTTGAAGGAGCAGCTGCGGGAGGTGTGGGACGCACGT
GAGTGGCCGCGGCCCGAGAGCGCCGGCTCCGGCGCCGGCTCCGGCAGCGG
CAGCGGTGTGTCGCCGCCGGCGCTGCCGTCGACGCTGCCGTCGATGGCCT
TCGGAAGGGCAGGGTGCGGGGCGGTGCCGCCGCCGCCACCATCGGGGTTG
TCCGGTGCGTCGCCGGACGGCGGCGGCTTGCGGCGGGCGAGCACGGGGGC
CACCGTGGCGTCGGTTAAGCAGAAGGCGGCCGGGATGCTGCTGTCGCCGT
TGGCGATCAACAGGCTGCATTGGGACTCGTCGCCGTCGGCAGGCGGCGCG
GCGGCGGCAGGGTCGGCATTCCGAGGAGGGCAGCAGCAGTTGTCGAACAA
CGACGGTGGCGGCGGCGGGGATGCGCTGCCTGCGCCGGTGCCACGAATTA
TCGGATTTTTGTCTCAGACCACACGGCCCCAGTTAATCAAACCACCGGTC
CCCGTTGATTGAAGTGAGCGGGCGATCCGAACCGGTTTACTTATGGAGAC
TGGCTGGATGAGCGAACGGGAAGGACGCTCATAACCAAGAACTCAAATGT
GAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10036:670..2422-

>mRNA_P-wetherbeei_contig10036.1.1 ID=mRNA_P-wetherbeei_contig10036.1.1|Name=mRNA_P-wetherbeei_contig10036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1635bp|location=Sequence derived from alignment at P-wetherbeei_contig10036:670..2422- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGACGGCGGCAGTAGTGGCGCCGACGGCGGCGCCGGGGGCGGCGG
CGGCGTCATGGGCGTGGCGGCTGCGCAAATCTCGTGGGCACTGGAGCAGG
CGGTGCACGAGCTGGGCCTGGCCGGGCGGGACAGCGCGGCCGAAAAGAAC
TGGCGGGAGATGGTTTTACCGGATCACCTCTTGCAGCTGGCGCGCAACGA
CGTCCGGCGCTACTGCGGTGCCCGCGGCGCGCTCAAACAGTCCATCTGCA
CCATGTCGGTCACGGTAGAGCAGGCTGAAGAGTTCTTCCAGCTGTGGCCG
ACGTTAAAGTCGCTGGGTTCCACCGGGACGGGCCCGGCCGACTGGCTTTC
CGTGCTCAATCTGCTCTGCTTTGGCGTCGCCTTTGCCGAGGGTCTGGTGG
CGCCGCCGCCGCTTGGGCTGGCGTCGTCGTCCGGCGGCGGTGGCGGCGGC
GGCGGTCGGGGCAGCGTCAATGCCAACGCGGTGGCACGGCAGCTGCTGGC
GGAGACGCTGTCGGGCGACGGACGCCACATGGACCTCTGGATGCGCGATT
TGTCCCCACCGGAGCTTTCTGACGTGCTCCGGCTGGTCGCAAAGTCTGCC
GCCCGCCTCGAGAAGCTGACGGTTGGCAGCTCCCACACGGGCGGCGCCGG
CATCGGCAGCTTTCTGGCGGGCGCCCCGTCGCTGCGGGAGGTGGAGCTGG
AGTGGGAAGGGGTTCGCGACGTGTCTGTGCTGGCCAGCGGGCTCCGGCAC
CACCCGCGGCTGGCGCGGCTGAGCCTGACGCACAACTTCGTCGGGCAGGC
GGGGGCGGCTCAGCTGGCGGAGGCGCTCAAGTGGAACACGACGCTGACGG
AGCTGGACTTGAGAGAGAATTGCATCGGCTCTGTCGGGCTCAAGCAGCTG
GCAATCGCGCTGGCGCTGAACGGGACGCTGCGGACGCTGCACGTGCAGGA
CAACGGCGTCGGCGACGACGGCGCTATTGACATCACCGAGGCGCTAATGC
GCAACACAACGCTGGCGGTGGTGTCACTCGACGGCAACGACATTACTGAC
GTCGGCGGAAGGACACTTTTGATCGCCGTCCGCGAGAACCCGGCGCTGAC
GCAGCTCAGCCTCGGGCGGAACCAGCTGTCGGACTTGTTGAAGGAGCAGC
TGCGGGAGGTGTGGGACGCACGTGAGTGGCCGCGGCCCGAGAGCGCCGGC
TCCGGCGCCGGCTCCGGCAGCGGCAGCGGTGTGTCGCCGCCGGCGCTGCC
GTCGACGCTGCCGTCGATGGCCTTCGGAAGGGCAGGGTGCGGGGCGGTGC
CGCCGCCGCCACCATCGGGGTTGTCCGGTGCGTCGCCGGACGGCGGCGGC
TTGCGGCGGGCGAGCACGGGGGCCACCGTGGCGTCGGTTAAGCAGAAGGC
GGCCGGGATGCTGCTGTCGCCGTTGGCGATCAACAGGCTGCATTGGGACT
CGTCGCCGTCGGCAGGCGGCGCGGCGGCGGCAGGGTCGGCATTCCGAGGA
GGGCAGCAGCAGTTGTCGAACAACGACGGTGGCGGCGGCGGGGATGCGCT
GCCTGCGCCGGTGCCACGAATTATCGGATTTTTGTCTCAGACCACACGGC
CCCAGTTAATCAAACCACCGGTCCCCGTTGATTGA
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