mRNA_P-wetherbeei_contig10033.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10033.1.2
Unique NamemRNA_P-wetherbeei_contig10033.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10033.1.2 vs. uniprot
Match: A0A7S3ZQ58_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQ58_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.020e-25
Identity = 67/192 (34.90%), Postives = 99/192 (51.56%), Query Frame = 1 
Query:    1 MRVLVTVVYDHHEEEYDIAVGDGRKSFKWLATAAAQRFSSRLKSSGRRRHCESVTRSGKMTNTPFGRLLPAHISTENSSFHHPDSLLCDELTDGQNVFITLAQAVQLNEIGSPVLDNWMNVAFCMSEAQRGRRDDALRAEMSRISAARXXXXXXXXXXXXXXXRGKAEQMRAQLSGQMLSREKVDRAFAEDW 576
            M+++V V        + I VGDGRKSFKWLA AAAQRF S     G+ R  E   R    TN     L+P+   TE+  F HPD+LL ++L DG ++ + +A  V ++E GSPV   W  +AF +S +   +RD A+  E    +A +                 KA+ +R  +  Q+  ++ V+ A +EDW
Sbjct:    1 MQLVVRVESGDRTSTFKIQVGDGRKSFKWLALAAAQRFGSESPK-GKLRQRE---RKFPCTNPANTNLVPSRCYTEDQDFFHPDALLVEQLQDGDHLTVEVAPRVYVDEAGSPVKSRWQTIAFAVSPSSSAKRDAAIAEEYDAQNAKKVAAKAIEDEADRLENMRKADHVREIIKDQLPDQDAVEEALSEDW 188
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BLAST of mRNA_P-wetherbeei_contig10033.1.2 vs. uniprot
Match: A0A7S2DGT9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGT9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.810e-23
Identity = 65/194 (33.51%), Postives = 100/194 (51.55%), Query Frame = 1 
Query:   37 EEEYDIAVGDGRKSFKWLATAAAQRFSSRLKSSGRRRHCESVTRSGKMTNTPFGRLLPAHISTENSSFHHPDSLLCDELTDGQNVFITLAQAVQLNEIGSPVLDNWMNVAFCMSEAQRGRRDDALRAEMSRISAARXXXXXXXXXXXXXXXRGKAEQMRAQLSGQMLSREKVDRAFAEDWRR-IDNPSSRLLEK 615
            E E DIA G+G+K+FKWLA  AA RFSSR+   G RRH E  T +G   N  +   +P  + T+   FHHPD  + + L DG +V + L  ++ +++ G P L  W  +AF +S+ Q  +R  AL  E                       + KA+ MR ++  Q+  ++++    A+DW   I++PSS  + K
Sbjct:    1 ETEIDIACGNGKKTFKWLALTAAARFSSRIPR-GMRRHREVPTITG--ANASY---VPLDVITDGLVFHHPDDFVIEHLADGDSVTVRLGASLPVDDRGQPELTRWSTIAFAVSDIQTEKRTQALVEEKRICDERMAREKEEKRAALAQLYKRKAKAMREEMKNQITDQKRLAAELADDWAALINSPSSERILK 188
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BLAST of mRNA_P-wetherbeei_contig10033.1.2 vs. uniprot
Match: A0A835YLL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.020e-18
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    1 MRVLVTVVYDHHEEEYDIAVGDGRKSFKWLATAAAQRFSSRLKSSGRRRHCESVTRSG-KMTNTPFGRLLPAHISTENSSFHHPDSLLCDELTDGQNVFITLAQAVQLN 324
            MRVLV   ++  EE  D+AVGDGRKSFKWL   AAQRF +  K  GRRRH E    +  + TN    RLLP+ + TE + F HPD+LLC+E+ DG  V + L   + ++
Sbjct:    1 MRVLVRCRFNESEELLDVAVGDGRKSFKWLGLVAAQRFVALAKPEGRRRHREIRKNNDFRYTNA---RLLPSRVLTEGNPFCHPDNLLCNEVADGDEVTVLLTDKMAVD 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10033.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3ZQ58_9STRA7.020e-2534.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2DGT9_9STRA8.810e-2333.51Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YLL6_9STRA1.020e-1847.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10033contigP-wetherbeei_contig10033:127..995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009040924.1
Model size642
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.3e-22
EggNOG OGs2E1F0@1|root,2S8S8@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_002550.1
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185850.936576-CDS-P-wetherbeei_contig10033:126..3431683185850.936576-CDS-P-wetherbeei_contig10033:126..343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10033 127..343 -
1683185850.9470456-CDS-P-wetherbeei_contig10033:570..9951683185850.9470456-CDS-P-wetherbeei_contig10033:570..995Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10033 571..995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10033.1.2prot_P-wetherbeei_contig10033.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10033 127..995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10033.1.2

>prot_P-wetherbeei_contig10033.1.2 ID=prot_P-wetherbeei_contig10033.1.2|Name=mRNA_P-wetherbeei_contig10033.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
MRVLVTVVYDHHEEEYDIAVGDGRKSFKWLATAAAQRFSSRLKSSGRRRH
CESVTRSGKMTNTPFGRLLPAHISTENSSFHHPDSLLCDELTDGQNVFIT
LAQAVQLNEIGSPVLDNWMNVAFCMSEAQRGRRDDALRAEMSRISAARAE
QTAAAAAHAARIARGKAEQMRAQLSGQMLSREKVDRAFAEDWRRIDNPSS
RLLEKCACSFGFV*
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mRNA from alignment at P-wetherbeei_contig10033:127..995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10033.1.2 ID=mRNA_P-wetherbeei_contig10033.1.2|Name=mRNA_P-wetherbeei_contig10033.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=869bp|location=Sequence derived from alignment at P-wetherbeei_contig10033:127..995- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGTCCTCGTGACTGTGGTCTATGACCATCACGAGGAGGAGTATGA
CATCGCCGTTGGAGACGGCCGCAAGAGCTTCAAGTGGCTGGCGACGGCGG
CGGCGCAGCGCTTTTCGTCGAGGCTCAAATCAAGCGGTAGAAGAAGGCAC
TGCGAATCCGTGACGCGCTCTGGAAAAATGACGAACACCCCGTTCGGACG
GCTCCTCCCCGCGCACATCTCGACGGAGAACAGCTCCTTCCACCACCCTG
ACAGCCTCCTCTGCGACGAGCTCACGGATGGCCAGAACGTCTTCATCACG
CTAGCGCAGGCGGTCCAACTAAACGAGATTGGCTCCCCCGTCCTCGACAA
CTGGATGAATGTGGCATTTTGCATGAGCGAGGCGCAGCGGGGGCGACGCG
ACGATGCGCTCCGCGCGGAGATGAGGTAAGTTACAAGGAAGAATGGATGT
GGTGATGGGAAATTTTACCGACACCATTCTTTTGCGATCGGGGAGGCTGT
GGCCTCATTCCTCAGTTCAATAAAAGCACATCGACGAGCATATGCATCTT
CTTTTCCGCTGCAGGCTCTCATTAGCCTTGGACTGTTGCCATTCCGATCC
CTTCCTCCCCTCCTTCCTTCCGCCCGGCATGACGCAATGAACAAAAAAAC
AGCCGGATCTCCGCCGCCCGGGCAGAGCAGACGGCGGCGGCGGCGGCACA
CGCGGCGCGCATTGCTCGCGGCAAGGCGGAGCAGATGCGGGCGCAGCTGA
GCGGGCAGATGCTGAGCCGTGAGAAGGTCGACCGTGCCTTCGCCGAGGAC
TGGCGGCGGATCGACAACCCATCCTCGCGCCTGCTCGAGAAGTGCGCGTG
CAGTTTCGGCTTTGTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10033:127..995-

>mRNA_P-wetherbeei_contig10033.1.2 ID=mRNA_P-wetherbeei_contig10033.1.2|Name=mRNA_P-wetherbeei_contig10033.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig10033:127..995- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGTCCTCGTGACTGTGGTCTATGACCATCACGAGGAGGAGTATGA
CATCGCCGTTGGAGACGGCCGCAAGAGCTTCAAGTGGCTGGCGACGGCGG
CGGCGCAGCGCTTTTCGTCGAGGCTCAAATCAAGCGGTAGAAGAAGGCAC
TGCGAATCCGTGACGCGCTCTGGAAAAATGACGAACACCCCGTTCGGACG
GCTCCTCCCCGCGCACATCTCGACGGAGAACAGCTCCTTCCACCACCCTG
ACAGCCTCCTCTGCGACGAGCTCACGGATGGCCAGAACGTCTTCATCACG
CTAGCGCAGGCGGTCCAACTAAACGAGATTGGCTCCCCCGTCCTCGACAA
CTGGATGAATGTGGCATTTTGCATGAGCGAGGCGCAGCGGGGGCGACGCG
ACGATGCGCTCCGCGCGGAGATGAGCCGGATCTCCGCCGCCCGGGCAGAG
CAGACGGCGGCGGCGGCGGCACACGCGGCGCGCATTGCTCGCGGCAAGGC
GGAGCAGATGCGGGCGCAGCTGAGCGGGCAGATGCTGAGCCGTGAGAAGG
TCGACCGTGCCTTCGCCGAGGACTGGCGGCGGATCGACAACCCATCCTCG
CGCCTGCTCGAGAAGTGCGCGTGCAGTTTCGGCTTTGTTTAG
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