mRNA_P-wetherbeei_contig1003.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1003.3.1
Unique NamemRNA_P-wetherbeei_contig1003.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: FLA10_CHLRE (Kinesin-like protein FLA10 n=5 Tax=Chlamydomonas TaxID=3052 RepID=FLA10_CHLRE)

HSP 1 Score: 83.2 bits (204), Expect = 4.990e-16
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  100 GVEGIRVTVRVRPSLVDEEGGAPSIL---SIDGNKIALRHPKPRRSVECQ---YDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            G E ++V VR RP    E+    S +    +D  ++ +R+PK   S   +   +D V D NC Q  VFD+ ARP ++S ++G N TIFAYGQTG+GKSHTM
Sbjct:    7 GSESVKVVVRCRPLNGKEKADGRSRIVDMDVDAGQVKVRNPKADASEPPKAFTFDQVYDWNCQQRDVFDITARPLIDSCIEGYNGTIFAYGQTGTGKSHTM 107          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: A0A507BZ79_9FUNG (Kinesin-like protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507BZ79_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 5.950e-15
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   82 PSSHDEGVEGIRVTVRVRP-SLVDEEGGAPSILSIDGNKIALRHPKPRRSVECQ------YDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            P S     E ++V VR RP SL ++  G  SI+SID    ++    PR   + +      +D+  D N +Q  V+++ ARP +ESVL+G N TIFAYGQTG+GK+ +M
Sbjct:    4 PPSASSAPEAVKVVVRCRPFSLKEQAAGHSSIVSIDHKAASVHITDPRPGNQSEPPKTFTFDSAFDPNANQIDVYNITARPIVESVLEGYNGTIFAYGQTGTGKTFSM 111          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: A0A507CIX5_9FUNG (Kinesin-like protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CIX5_9FUNG)

HSP 1 Score: 79.7 bits (195), Expect = 8.080e-15
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   70 IPMGPSSHDEGVEGIRVTVRVRP-SLVDEEGGAPSILSIDGNKIALR--HPKPRRSVE----CQYDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            +   PSS  E V   +V VRVRP S  ++  G  +I+SID     +R   P+P  + E      +D+  D NC Q  V+++ ARP +ESVL+G N TIFAYGQTG+GK+ +M
Sbjct:    1 MAAAPSSEKEAV---KVVVRVRPFSEKEKNAGHSNIVSIDHKDAVVRVVDPRPGGAAEPPKSFTFDSAFDSNCLQIDVYNITARPIVESVLEGYNGTIFAYGQTGTGKTFSM 109          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: A0A226EHA1_FOLCA (Kinesin-like protein n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226EHA1_FOLCA)

HSP 1 Score: 79.7 bits (195), Expect = 8.130e-15
Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   67 VIPMGPSSHDEGVEGIRVTVRVRP-SLVDEEGGAPSILSI--DGNKIALRHPKPRRSVE------------CQYDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
             +P  P+S     E +RV VR RP S  + E     I+ +  + N I++ +P P  S +              +DAV    C Q  V++ VARP +E+VLQG N TIFAYGQTG+GK++TM
Sbjct:   21 TVPSSPASS----ENVRVVVRCRPMSRKESERNCKLIVDVISESNSISVNNPNPTESSDPTTKGDPNSPKTFTFDAVFSTTCTQADVYNEVARPIVENVLQGYNGTIFAYGQTGTGKTYTM 137          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: D8UD54_VOLCA (Kinesin-like protein n=4 Tax=Volvocaceae TaxID=3065 RepID=D8UD54_VOLCA)

HSP 1 Score: 78.6 bits (192), Expect = 2.080e-14
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  106 EGIRVTVRVRP-SLVDEEGGAPSI--LSIDGNKIALRHPKPRRSVECQ---YDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            E + V VR RP +  +++ G   I  + +D  ++ +R+PK   S   +   +D V D NC Q  VFD+ ARP ++S ++G N TIFAYGQTG+GKSHTM
Sbjct:   74 ECLPVVVRCRPLNGKEKQDGRERIVDMDVDAGQVKVRNPKADASEPPKAFTFDQVYDWNCQQRDVFDITARPLIDSCIEGYNGTIFAYGQTGTGKSHTM 172          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: A0A250X3T6_9CHLO (Kinesin-like protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3T6_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 5.230e-14
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   85 SSHDEGVEGIRVTVRVRPSLVDEEG-GAPSILSIDGNKIALRHPKPRRSVECQ----YDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            +S ++G E ++V +R RP    E   G  +I+ +D  +  +R   P+   E      +D V D N  Q  +FD+ ARP ++S ++G N TIFAYGQTG+GKSHTM
Sbjct:    2 ASANKGSEAVKVVIRCRPLNGKETADGRKTIVEMDQKEGVIRLLNPKGDGEAPKSFTFDQVYDWNSTQLDIFDITARPLIDSAMEGYNGTIFAYGQTGTGKSHTM 106          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: A0A8J2PWB0_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2PWB0_9HEXA)

HSP 1 Score: 76.6 bits (187), Expect = 9.560e-14
Identity = 40/96 (41.67%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  106 EGIRVTVRVRP-SLVDEEGGAPSILSID--GNKIALRHPKPRRSVECQYDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            E +RV VRVRP S  + E G  SI  +D  G +I + +P   + +   +DA+  ++ +Q  +++ +ARP +++VL+G N+TIFAYGQTG+GK++TM
Sbjct:    4 ENVRVVVRVRPLSTKEVEKGCKSIAKVDPTGRRIDVVNPVDSKKLTFCFDALF-QDAEQAEIYNQIARPLVQNVLEGYNATIFAYGQTGTGKTYTM 98          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: A0A1W0XAJ7_HYPDU (Kinesin-like protein n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0XAJ7_HYPDU)

HSP 1 Score: 76.6 bits (187), Expect = 9.760e-14
Identity = 49/115 (42.61%), Postives = 61/115 (53.04%), Query Frame = 1
Query:   49 RFRQGNVIPMGPSSHDEGVEGIRVTVRVRPSLVDE-EGGAPSILSIDG--NKIALRHPKPRRSVECQYDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            RF   N  P       E  E IRV VR RP    E E G  SI+  D     +AL+ P         +D V   +  Q  +F+ VARP +++VL+G N TIFAYGQTGSGK+HTM
Sbjct:  127 RFMAENEAP------GERNENIRVVVRGRPLSTGELEAGYESIVHFDSVQQTVALKDPHSGAVKSFTFDHVFGPDSTQPDIFNEVARPIIDNVLEGYNGTIFAYGQTGSGKTHTM 235          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: M2X2I2_GALSU (Kinesin-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X2I2_GALSU)

HSP 1 Score: 76.6 bits (187), Expect = 9.870e-14
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   88 SHDEGVEGIRVTVRVRPSLVDEEGGAPSILSIDGNKIALRHPKPRRSVECQYDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            S +   E +RV VRVRP +  E+    S++ + GN + +    P  + +  +D + D +  Q  VF+ +A+P    V+QG N TIFAYGQTGSGK+ TM
Sbjct:    2 SDNHSAESVRVVVRVRPLISVEQ--EQSVVQVQGNNV-IYVQDPDAAKKFSFDRIFDSDTKQATVFEEIAKPIANDVMQGYNGTIFAYGQTGSGKTFTM 97          
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Match: A0A8K1CLT6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLT6_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 1.830e-13
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   82 PSSHDEGVEGIRVTVRVRPSLVDEEG--GAPSILSIDGNKIALRHPKPRRSVECQYDAVLDENCDQGAVFDVVARPALESVLQGINSTIFAYGQTGSGKSHTM 384
            P S+D     +RV  RVRP    E    GA   +++  N+I ++     ++    YD V D+  DQ  +FD VARP ++ ++ G N+TIFAYGQT SGK++TM
Sbjct:   13 PPSNDGSRSAVRVCCRVRPQNAKELAIPGAKKCVAVTDNQIDVKTGDGNQTFT--YDHVFDDTDDQQVIFDNVARPVVQDIMDGYNATIFAYGQTSSGKTYTM 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1003.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
FLA10_CHLRE4.990e-1643.56Kinesin-like protein FLA10 n=5 Tax=Chlamydomonas T... [more]
A0A507BZ79_9FUNG5.950e-1540.74Kinesin-like protein n=2 Tax=Synchytrium endobioti... [more]
A0A507CIX5_9FUNG8.080e-1542.86Kinesin-like protein n=1 Tax=Synchytrium microbalu... [more]
A0A226EHA1_FOLCA8.130e-1538.84Kinesin-like protein n=2 Tax=Folsomia candida TaxI... [more]
D8UD54_VOLCA2.080e-1443.43Kinesin-like protein n=4 Tax=Volvocaceae TaxID=306... [more]
A0A250X3T6_9CHLO5.230e-1440.00Kinesin-like protein n=1 Tax=Chlamydomonas eustigm... [more]
A0A8J2PWB0_9HEXA9.560e-1441.67Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A1W0XAJ7_HYPDU9.760e-1442.61Kinesin-like protein n=1 Tax=Hypsibius dujardini T... [more]
M2X2I2_GALSU9.870e-1439.39Kinesin-like protein n=1 Tax=Galdieria sulphuraria... [more]
A0A8K1CLT6_PYTOL1.830e-1339.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1003contigP-wetherbeei_contig1003:4625..5013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3055.EDO97387
Preferred nameFLA10
PFAMsKinesin
Model size389
Max annot lvl3041|Chlorophyta
KEGG koko:K10394
KEGG Pathwayko04340,map04340
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0010970,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030705,GO:0031503,GO:0031514,GO:0032838,GO:0035720,GO:0042073,GO:0042995,GO:0043226,GO:0044085,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
Evalue8.17e-17
EggNOG OGsCOG5059@1|root,KOG4280@2759|Eukaryota,37YVP@33090|Viridiplantae,34JK0@3041|Chlorophyta
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-27_001770.1
DescriptionBelongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
Cds size387
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185850.8508866-CDS-P-wetherbeei_contig1003:4624..50111683185850.8508866-CDS-P-wetherbeei_contig1003:4624..5011Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1003 4625..5011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1003.3.1prot_P-wetherbeei_contig1003.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1003 4625..5011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1003.3.1

>prot_P-wetherbeei_contig1003.3.1 ID=prot_P-wetherbeei_contig1003.3.1|Name=mRNA_P-wetherbeei_contig1003.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
EEPTGSRDDSLDGSYERFRQGNVIPMGPSSHDEGVEGIRVTVRVRPSLVD
EEGGAPSILSIDGNKIALRHPKPRRSVECQYDAVLDENCDQGAVFDVVAR
PALESVLQGINSTIFAYGQTGSGKSHTML
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mRNA from alignment at P-wetherbeei_contig1003:4625..5013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1003.3.1 ID=mRNA_P-wetherbeei_contig1003.3.1|Name=mRNA_P-wetherbeei_contig1003.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=389bp|location=Sequence derived from alignment at P-wetherbeei_contig1003:4625..5013+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCCCACTGGTAGTCGGGATGATAGTCTAGATGGAAGTTACGAAAG ATTTCGGCAAGGCAACGTGATACCCATGGGGCCAAGTAGTCATGATGAGG GCGTGGAAGGAATCAGAGTTACAGTGCGCGTGCGTCCTTCGCTGGTGGAC GAGGAGGGCGGTGCTCCGTCCATTCTCAGCATCGACGGGAACAAAATCGC GCTGCGACACCCCAAGCCCCGAAGATCCGTAGAGTGTCAGTACGATGCGG TGCTCGACGAGAATTGCGACCAGGGCGCCGTGTTCGACGTGGTTGCGCGA CCGGCGCTAGAATCAGTCCTCCAAGGCATCAACTCGACAATCTTTGCATA TGGCCAGACCGGGAGCGGCAAGTCGCATACGATGCTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1003:4625..5013+

>mRNA_P-wetherbeei_contig1003.3.1 ID=mRNA_P-wetherbeei_contig1003.3.1|Name=mRNA_P-wetherbeei_contig1003.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig1003:4625..5013+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCCCACTGGTAGTCGGGATGATAGTCTAGATGGAAGTTACGAAAG
ATTTCGGCAAGGCAACGTGATACCCATGGGGCCAAGTAGTCATGATGAGG
GCGTGGAAGGAATCAGAGTTACAGTGCGCGTGCGTCCTTCGCTGGTGGAC
GAGGAGGGCGGTGCTCCGTCCATTCTCAGCATCGACGGGAACAAAATCGC
GCTGCGACACCCCAAGCCCCGAAGATCCGTAGAGTGTCAGTACGATGCGG
TGCTCGACGAGAATTGCGACCAGGGCGCCGTGTTCGACGTGGTTGCGCGA
CCGGCGCTAGAATCAGTCCTCCAAGGCATCAACTCGACAATCTTTGCATA
TGGCCAGACCGGGAGCGGCAAGTCGCATACGATGCTC
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