mRNA_P-wetherbeei_contig1.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1.6.1
Unique NamemRNA_P-wetherbeei_contig1.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: A0A0K2RWL6_9STRA (ATP synthase subunit a n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWL6_9STRA)

HSP 1 Score: 285 bits (729), Expect = 6.730e-94
Identity = 156/252 (61.90%), Postives = 190/252 (75.40%), Query Frame = 1
Query:    7 IFLLSPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAG-AALLLSMESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            +FLLSPLEQF+I  L   +FG +D+S TN ++I+ + L G   L++ + S    F L P  WQ V E  Y TIA M+ DNLG +GQ YF F+F+LF FV+++NL+GLVPYSFT TSHLI+T  L+LMVF GVN I +  H   +  LFLP G+ LGLA LL PIE VSY+FKPISL VRLFANMMAGHTLLKVI GFAW MM +G   FVAHLVPLA+L+LL+GLELGVA+IQAYVF IL+CIYL D++NLH
Sbjct:    1 MFLLSPLEQFQILPLIPIRFGNLDISFTNGNLIILIALGGYLTLMIMLLSSKGSFYLVPSRWQIVIETFYETIANMLYDNLGVRGQQYFPFVFILFMFVLLSNLIGLVPYSFTITSHLILTFALSLMVFWGVNAICLKEHGAHMGSLFLPPGTSLGLALLLVPIEFVSYMFKPISLGVRLFANMMAGHTLLKVIAGFAWSMMASGGLLFVAHLVPLAVLILLVGLELGVAMIQAYVFTILTCIYLNDAINLH 252          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: A0A649UDS2_AURAN (ATP synthase subunit a n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A649UDS2_AURAN)

HSP 1 Score: 280 bits (715), Expect = 9.290e-92
Identity = 152/248 (61.29%), Postives = 185/248 (74.60%), Query Frame = 1
Query:   19 SPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAGAALLLS-MESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            SPLEQF+I  +  F  G  D SITN +VI+ +GL     LL+ + +    + L P  WQ V E +Y  I+G++KD LG KGQ YF ++F LFSF++IANL+GLVPYSFT TSHLIVT  LA+M FIG+NLI +  H   I  LFLP GS L LAFLL PIEIVSY+ +PISL+VRLFANMMAGH LLKVI GFAW MM +G   F+AH VPLA+LVL+MGLE+GVA+IQAYVF IL+CIYL D++NLH
Sbjct:    6 SPLEQFQILPVIPFSIGNFDFSITNSTVIILIGLFSFCFLLNALVNDKGSYNLVPNRWQVVVEGMYELISGLLKDTLGGKGQEYFPYVFTLFSFILIANLIGLVPYSFTVTSHLIVTFSLAIMTFIGINLICVREHGHHIFSLFLPAGSSLPLAFLLVPIEIVSYLVRPISLSVRLFANMMAGHALLKVIAGFAWAMMLSGGIMFIAHFVPLAILVLVMGLEVGVAMIQAYVFTILTCIYLNDALNLH 253          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: D2Z223_9STRA (ATP synthase subunit a n=1 Tax=Chattonella marina TaxID=90936 RepID=D2Z223_9STRA)

HSP 1 Score: 278 bits (711), Expect = 3.520e-91
Identity = 151/248 (60.89%), Postives = 184/248 (74.19%), Query Frame = 1
Query:   19 SPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAGAALLLSM-ESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            SPLEQF+I+ L S Q G  D S TN ++I+ +GL    + L M  S   +    P  WQ + E +Y T++ MV DN+G KGQ YF F+F LF+FV+I+NL+GLVPYSFT TSHLI+T  LAL+VFIGVN+I I  H   +L LF+P G+ LGLAFLL PIEIVSYIFKP+SLAVRLFANMMAGHTLLKVI GF+W MM  G   F+ H +PL +LVLL+GLELGVA+IQ YVF IL+CIYL D +NLH
Sbjct:    4 SPLEQFQIYPLISIQLGNFDFSFTNGALIISIGLISFLIGLEMLMSQQNQIYFIPKTWQLLIETLYETVSAMVVDNVGEKGQKYFPFIFTLFTFVLISNLIGLVPYSFTITSHLILTFGLALIVFIGVNIICIKHHGIHMLSLFMPSGTSLGLAFLLVPIEIVSYIFKPVSLAVRLFANMMAGHTLLKVIAGFSWAMMGGGGFLFLGHFIPLIVLVLLVGLELGVAIIQGYVFTILTCIYLNDGINLH 251          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: D2Z268_HETAK (ATP synthase subunit a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z268_HETAK)

HSP 1 Score: 275 bits (703), Expect = 5.960e-90
Identity = 148/248 (59.68%), Postives = 185/248 (74.60%), Query Frame = 1
Query:   19 SPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAGAALLLSM-ESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            SPLEQF+I+ L S Q G  D S TN ++++ +GL G  L L M  S + +F   P +WQ V E IY T+A  +  N+G +GQ YF F+F LF+FV+I+NL+GLVPYSFT TSH+IVT  LALMVF+GV +I I  H   +L LF+P G+ L LAFLL PIEI+SY+F+PISL++RLFANMMAGH LLKVI GFAW MM AG   F+AH  PL +L+LL+GLELGVA IQAYVF ILSC+YL D++NLH
Sbjct:    5 SPLEQFQIYPLISIQLGNFDFSFTNAALMISIGLIGFLLCLEMIMSSTGQFYFVPKHWQLVVENIYETVADTLVSNVGEQGQKYFPFIFTLFTFVLISNLIGLVPYSFTITSHIIVTFGLALMVFVGVTIISIKEHGLHMLSLFIPSGTSLALAFLLVPIEIISYVFRPISLSLRLFANMMAGHALLKVIAGFAWSMMTAGGLLFLAHFFPLVVLILLIGLELGVAFIQAYVFTILSCMYLNDAINLH 252          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: A0A140F2W0_9STRA (ATP synthase subunit a n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140F2W0_9STRA)

HSP 1 Score: 273 bits (698), Expect = 4.170e-89
Identity = 148/257 (57.59%), Postives = 188/257 (73.15%), Query Frame = 1
Query:   13 LLSPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAGAALL--------LSMESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            L SPL+QFRI  +     G+ DLS+TN ++ILF+ L     L        L +   +  F +    W  + E +Y  I+ ++ DN+G KGQ YF F+FV+F FV+ ANL+GL+PYSFTATSH+IVTL LAL+VF+GVN+IGI +HK K L LFLP G+ L LAFLL P+EIVS++ KPISL+VRLFANMMAGHTLLKVI GFAW MM  G   FVAH++PL +L +L+GLELGVA+IQAYVF +L+CIYL DS+NLH
Sbjct:    2 LASPLDQFRIIPILPASLGYFDLSLTNSALILFIALGSFLFLAFLFVSPALYLAKDAGIFLVPNNRWFLLIENLYLVISSLLFDNVGIKGQQYFPFVFVIFVFVLQANLIGLIPYSFTATSHIIVTLSLALIVFVGVNIIGINIHKIKFLNLFLPSGTALPLAFLLVPLEIVSFVAKPISLSVRLFANMMAGHTLLKVIAGFAWSMMKGGGFLFVAHVLPLLVLFILVGLELGVAMIQAYVFTVLTCIYLNDSINLH 258          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: K9ZWN1_9STRA (ATP synthase subunit a n=10 Tax=Monodopsidaceae TaxID=425072 RepID=K9ZWN1_9STRA)

HSP 1 Score: 270 bits (691), Expect = 5.490e-88
Identity = 146/257 (56.81%), Postives = 189/257 (73.54%), Query Frame = 1
Query:   13 LLSPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAG----AALL----LSMESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            L SPL+QFRI  +F F  G++DLS TN ++ LFL L      A L+    L +      F +    W  + E +Y  I  ++ DN+G KG++YF FLFV+F FV+ +NL+GL+PYSFTATSH+IVT  L+L+VFIGVN++GI +H+   L LFLP G+ L LAFLL P+EIVS++ KPISL+VRLFANMMAGHTLLKVI GFAW MM  G   F+AH++PLA+L +L+GLELGVA+IQAYVF +L+CIYL DS+NLH
Sbjct:    6 LTSPLDQFRILPIFQFNLGFLDLSFTNSALTLFLALGSFLSIAYLIIYPALYLTKADGIFLVPNNRWFLLIENLYLVITSLLFDNVGIKGEVYFPFLFVIFVFVLQSNLIGLIPYSFTATSHIIVTFSLSLIVFIGVNIVGINIHRIHFLNLFLPSGTALPLAFLLVPLEIVSFLSKPISLSVRLFANMMAGHTLLKVIAGFAWSMMKGGGLLFLAHILPLAVLFILVGLELGVAIIQAYVFTVLACIYLNDSINLH 262          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: A0A343C631_FUCDI (ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 RepID=A0A343C631_FUCDI)

HSP 1 Score: 259 bits (663), Expect = 6.320e-84
Identity = 146/247 (59.11%), Postives = 176/247 (71.26%), Query Frame = 1
Query:   19 SPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAGAALLLSMESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            SPLEQF+I   FSF     D SITN  +  FLGL G  L +        F   P  WQ + E +Y T AG++ D++G  GQ YF F+F++FSF++I+N+ GLVPYSFT TSHLI T+ LAL VFIGV +I    H   +L LFLP G+ L LAFLL PIEIVSY+FKP+SLAVRLFANMMAGHTLLKVI GFAW MM +G    +AH+VPL +LV+L GLEL VALIQAYVF ILSCIY+ D++ LH
Sbjct:    4 SPLEQFQILPFFSFGIALFDFSITNAMITTFLGL-GFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQTMVLALSVFIGVVIICASTHGFHMLSLFLPGGTSLTLAFLLVPIEIVSYVFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLLAHIVPLVVLVILFGLELAVALIQAYVFTILSCIYINDAIVLH 249          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: A0A140F2M9_9STRA (ATP synthase subunit a n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A140F2M9_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.200e-83
Identity = 143/259 (55.21%), Postives = 185/259 (71.43%), Query Frame = 1
Query:   13 LLSPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAG----------AALLLSMESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            LLSPL+QFRI  + S   G  D+S TN ++IL + L             +L LS+E  +  F +    W  + E +Y+ I+G++ DN+G KGQ YF F+FV+F FV+ +NL+GL+PYSFT TSH+IVT  LAL+VFIGVN+I    H    L +FLP G+ L LAFL+ PIE+VS++ KP+SL+VRLFANMMAGHTLLKVI GFAW MM AG   F AH++PL +L LL+GLELGVA+IQAYVF +L+CIYL DS+NLH
Sbjct:    2 LLSPLDQFRILPILSGSIGSFDISFTNSALILLIALGSFLFLGFLFVSPSLYLSVEDGT--FLVPNNRWFLLIENLYSAISGLIFDNVGPKGQAYFPFVFVIFVFVLQSNLIGLIPYSFTVTSHIIVTFSLALIVFIGVNIIXXXXHGVHFLSIFLPAGTALPLAFLIVPIEVVSFVAKPVSLSVRLFANMMAGHTLLKVIAGFAWSMMKAGGFLFFAHVLPLIILFLLVGLELGVAIIQAYVFTVLTCIYLNDSINLH 258          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: A0A140F2T0_9STRA (ATP synthase subunit a n=3 Tax=Eustigmataceae TaxID=425071 RepID=A0A140F2T0_9STRA)

HSP 1 Score: 258 bits (659), Expect = 3.430e-83
Identity = 143/256 (55.86%), Postives = 178/256 (69.53%), Query Frame = 1
Query:   16 LSPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAGAALL--------LSMESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            LSPL+QFRIF + SF  G +D S TN S IL L +     +        L + +    F +    W  + E +Y TI+ ++ DN+G KGQ YF F FV+F F++  NL+GL+PYSFT TSH+I+T  LA++VFIGV ++GI  H    L LFLP G+ L LA LL P+EIVS++ KPISL+VRLFANMMAGHTLLKVI GFAW MM AG   F AH++PL LL LL+GLE GVALIQAYVF +LSCIYL DS+NLH
Sbjct:    3 LSPLDQFRIFPILSFDTGNLDFSFTNSSFILILAVGSFLYIGYLYICPTLYLPNVLGSFLVPNNRWFLIIEDLYLTISSLIYDNVGVKGQSYFPFFFVVFIFILQLNLIGLIPYSFTVTSHIILTFSLAIIVFIGVIIVGIYTHNKYFLNLFLPSGTGLSLALLLVPLEIVSFLSKPISLSVRLFANMMAGHTLLKVIAGFAWTMMTAGNFLFFAHILPLLLLFLLVGLEFGVALIQAYVFTVLSCIYLNDSINLH 258          
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Match: A0A7T8JJU0_9STRA (ATP synthase subunit a n=1 Tax=Coscinodiscus wailesii TaxID=671091 RepID=A0A7T8JJU0_9STRA)

HSP 1 Score: 257 bits (657), Expect = 5.310e-83
Identity = 138/249 (55.42%), Postives = 177/249 (71.08%), Query Frame = 1
Query:   13 LLSPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAGAALLLSMESHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFVVIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFLPQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAWGMMNAG--FFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNLH 753
            L +PLEQF+I +LFS +   +D S+TN  +I  +       L++       F L P  WQ + E +Y  IA ++ DNL   G+ Y  F+ VLFSF++IANL+GL+PYSFT TSHLI+T  L++ VFIGVN+IG  ++K K+L LF+P  +  GLA LL PIE VSYIFKPISL VRLFAN+MAGHTLLKVI GF+W M+      F AHL+PL +L++LMGLEL VA+IQAYVF IL+CIYL DS+NLH
Sbjct:    2 LFTPLEQFQIISLFSLKLFCLDFSLTNLLLISIISFLSFYFLITCLLKQTSFYLVPSNWQILVESLYEVIAQLLYDNLSNDGEKYLPFISVLFSFILIANLIGLIPYSFTITSHLIITFSLSMTVFIGVNIIGFNIYKFKMLSLFIPSNTSFGLALLLVPIEFVSYIFKPISLGVRLFANLMAGHTLLKVIVGFSWSMLLLDDLLFCAHLIPLLVLIILMGLELAVAVIQAYVFTILTCIYLNDSINLH 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K2RWL6_9STRA6.730e-9461.90ATP synthase subunit a n=1 Tax=Triparma laevis Tax... [more]
A0A649UDS2_AURAN9.290e-9261.29ATP synthase subunit a n=2 Tax=Pelagomonadales Tax... [more]
D2Z223_9STRA3.520e-9160.89ATP synthase subunit a n=1 Tax=Chattonella marina ... [more]
D2Z268_HETAK5.960e-9059.68ATP synthase subunit a n=2 Tax=Heterosigma akashiw... [more]
A0A140F2W0_9STRA4.170e-8957.59ATP synthase subunit a n=1 Tax=Monodopsis sp. MarT... [more]
K9ZWN1_9STRA5.490e-8856.81ATP synthase subunit a n=10 Tax=Monodopsidaceae Ta... [more]
A0A343C631_FUCDI6.320e-8459.11ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 Re... [more]
A0A140F2M9_9STRA1.200e-8355.21ATP synthase subunit a n=1 Tax=Trachydiscus minutu... [more]
A0A140F2T0_9STRA3.430e-8355.86ATP synthase subunit a n=3 Tax=Eustigmataceae TaxI... [more]
A0A7T8JJU0_9STRA5.310e-8355.42ATP synthase subunit a n=1 Tax=Coscinodiscus waile... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1contigP-wetherbeei_contig1:13389..14144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3075.A0A087S9Z0
PFAMsATP-synt_A
Model size756
Max annot lvl3041|Chlorophyta
KEGG koko:K02126
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.45e-69
EggNOG OGsCOG0356@1|root,KOG4665@2759|Eukaryota,37J5M@33090|Viridiplantae,34IHJ@3041|Chlorophyta
DescriptionATP synthase A chain
Cds size756
COG categoryC
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185847.8952975-CDS-P-wetherbeei_contig1:13388..141441683185847.8952975-CDS-P-wetherbeei_contig1:13388..14144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1 13389..14144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1.6.1prot_P-wetherbeei_contig1.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1 13389..14144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1.6.1

>prot_P-wetherbeei_contig1.6.1 ID=prot_P-wetherbeei_contig1.6.1|Name=mRNA_P-wetherbeei_contig1.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MSIFLLSPLEQFRIFNLFSFQFGWMDLSITNESVILFLGLAGAALLLSME
SHSQEFPLQPGYWQSVCEVIYATIAGMVKDNLGFKGQIYFSFLFVLFSFV
VIANLVGLVPYSFTATSHLIVTLCLALMVFIGVNLIGIGLHKDKILCLFL
PQGSPLGLAFLLTPIEIVSYIFKPISLAVRLFANMMAGHTLLKVIGGFAW
GMMNAGFFVAHLVPLALLVLLMGLELGVALIQAYVFVILSCIYLTDSVNL
H*
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mRNA from alignment at P-wetherbeei_contig1:13389..14144-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1.6.1 ID=mRNA_P-wetherbeei_contig1.6.1|Name=mRNA_P-wetherbeei_contig1.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig1:13389..14144- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCATATTTTTATTAAGTCCTTTAGAACAATTTCGAATTTTTAATCT TTTTTCGTTTCAATTTGGATGGATGGATTTATCTATTACCAATGAAAGCG TTATTCTTTTCCTAGGACTTGCAGGCGCGGCTCTGTTATTAAGCATGGAA AGCCACTCTCAAGAGTTTCCATTACAACCGGGATATTGGCAAAGTGTATG CGAGGTGATTTATGCTACAATTGCAGGAATGGTTAAAGATAATCTAGGCT TTAAAGGTCAAATTTACTTTAGTTTTCTTTTTGTATTATTTAGTTTTGTC GTTATTGCTAACTTAGTGGGTCTTGTGCCTTATAGCTTCACAGCCACAAG TCATTTGATTGTTACTCTTTGTCTTGCTCTTATGGTTTTTATTGGAGTAA ATCTTATTGGAATAGGACTTCATAAAGATAAGATCTTATGTCTTTTTTTA CCGCAAGGAAGTCCATTAGGATTGGCTTTTTTGTTAACTCCTATTGAGAT CGTATCGTATATCTTTAAACCAATTAGTTTAGCGGTACGATTGTTCGCTA ATATGATGGCAGGCCATACTCTTCTAAAAGTAATTGGTGGTTTTGCTTGG GGTATGATGAATGCTGGGTTTTTTGTAGCTCATCTTGTGCCACTTGCATT ATTGGTTTTACTTATGGGATTAGAGTTAGGTGTAGCTTTAATTCAAGCTT ATGTTTTTGTTATTTTAAGTTGTATCTATCTTACCGATAGTGTCAATCTT CACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1:13389..14144-

>mRNA_P-wetherbeei_contig1.6.1 ID=mRNA_P-wetherbeei_contig1.6.1|Name=mRNA_P-wetherbeei_contig1.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig1:13389..14144- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCATATTTTTATTAAGTCCTTTAGAACAATTTCGAATTTTTAATCT
TTTTTCGTTTCAATTTGGATGGATGGATTTATCTATTACCAATGAAAGCG
TTATTCTTTTCCTAGGACTTGCAGGCGCGGCTCTGTTATTAAGCATGGAA
AGCCACTCTCAAGAGTTTCCATTACAACCGGGATATTGGCAAAGTGTATG
CGAGGTGATTTATGCTACAATTGCAGGAATGGTTAAAGATAATCTAGGCT
TTAAAGGTCAAATTTACTTTAGTTTTCTTTTTGTATTATTTAGTTTTGTC
GTTATTGCTAACTTAGTGGGTCTTGTGCCTTATAGCTTCACAGCCACAAG
TCATTTGATTGTTACTCTTTGTCTTGCTCTTATGGTTTTTATTGGAGTAA
ATCTTATTGGAATAGGACTTCATAAAGATAAGATCTTATGTCTTTTTTTA
CCGCAAGGAAGTCCATTAGGATTGGCTTTTTTGTTAACTCCTATTGAGAT
CGTATCGTATATCTTTAAACCAATTAGTTTAGCGGTACGATTGTTCGCTA
ATATGATGGCAGGCCATACTCTTCTAAAAGTAATTGGTGGTTTTGCTTGG
GGTATGATGAATGCTGGGTTTTTTGTAGCTCATCTTGTGCCACTTGCATT
ATTGGTTTTACTTATGGGATTAGAGTTAGGTGTAGCTTTAATTCAAGCTT
ATGTTTTTGTTATTTTAAGTTGTATCTATCTTACCGATAGTGTCAATCTT
CACTAA
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