mRNA_P-canaliculata_contig102302.366.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102302.366.1
Unique NamemRNA_P-canaliculata_contig102302.366.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: UPI00040BC311 (winged helix DNA-binding protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00040BC311)

HSP 1 Score: 182 bits (462), Expect = 1.140e-56
Identity = 97/143 (67.83%), Postives = 112/143 (78.32%), Query Frame = 1
Query:    1 MQLSGNPREDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK 429
            M  S NPRE+IAYEVRGTFRAF NALIT LA ADISVGFFHILR+SWPE GR QK++A+LAFMTPSVASQQI+KMC  GLL R++  DD RKKIVKLTK G +KK  LV+ ++ IP  ASE +S  D++T   VL KLR  LK
Sbjct:    1 MSFSENPRENIAYEVRGTFRAFENALITALAKADISVGFFHILRLSWPEEGRKQKEVADLAFMTPSVASQQIKKMCKAGLLSRESAPDDDRKKIVKLTKEGLDKKNKLVSPIILIPVIASEGISDADMETATRVLHKLRLGLK 143          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: UPI001C4C5BCE (winged helix DNA-binding protein n=1 Tax=Sphingobium lactosutens TaxID=522773 RepID=UPI001C4C5BCE)

HSP 1 Score: 75.5 bits (184), Expect = 1.440e-14
Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = 1
Query:   19 PREDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK 429
            P +   Y VR   R F   L   LA  DI  GF++ LR+ W     TQK ++++  +  +     I+ M   GL+ R+ D+ D RK++V LT  GR  +  L+   ++I R A+  +  EDL+ +  VL+++  NL+
Sbjct:    2 PEKSFGYLVRRCHRRFDRLLNARLATHDIKTGFWYYLRVLWIRDQVTQKYLSDMTNVAENTTVTMIEGMVNSGLVQREVDATDKRKRLVGLTPYGRSLENKLMGHAVEINRIATRGIKEEDLEVSRRVLARMSENLQ 138          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A1U7DHK0_9RHOB (MarR family transcriptional regulator n=1 Tax=Brevirhabdus pacifica TaxID=1267768 RepID=A0A1U7DHK0_9RHOB)

HSP 1 Score: 60.8 bits (146), Expect = 7.330e-9
Identity = 36/130 (27.69%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   37 YEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNL 426
            Y +R T R F N L   +    +++G ++ LR+ W  +G TQ+ +++          + I+ M   GL+ R+ D  D RK++V LT+ G   +  L+    ++   A+ D STE+ +    +L ++R+ L
Sbjct:   20 YLIRSTHRHFQNYLSLRIRPHGVTLGMWYFLRVLWEHNGLTQRQLSDQVGTMEPTTLEAIRAMEKRGLVRRERDPADGRKRLVFLTEEGEALRAVLLPIAREVVDEAAADFSTEEREQLRGLLMRMRSRL 149          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A1Y6B2G3_9HYPH (DNA-binding transcriptional regulator, MarR family n=2 Tax=Tistlia TaxID=1321364 RepID=A0A1Y6B2G3_9HYPH)

HSP 1 Score: 59.3 bits (142), Expect = 3.350e-8
Identity = 38/136 (27.94%), Postives = 70/136 (51.47%), Query Frame = 1
Query:   25 EDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAE-LAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK 429
            ED+A  +R   R F   L   +++  +++G ++ LR  W E G +Q+++++ +  M P+  S  +  M  +GL+ R+ D  D R++ V LT  GR  K   +  + ++ R A +  S  D+     +L  +  NLK
Sbjct:   28 EDLAGRIRDVHRQFGRVLQQRISELGLTLGTWYFLRALWEEDGLSQRELSQRIGTMEPTTVSA-LNAMERLGLVRRERDPHDKRRRRVYLTDHGRSLKGEALGLLGELDRQALQGFSGADVGQLHTLLDSVAENLK 162          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A7V9PCL2_9ACTN (MarR family transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9PCL2_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 3.440e-7
Identity = 34/132 (25.76%), Postives = 65/132 (49.24%), Query Frame = 1
Query:   31 IAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNL 426
            + + +R T R+ A  L   +    +++G ++ LR+ W E G TQ+++++            I  M A GL+ R+ +  D RK+ + LT+ GR  +  L+    ++ R AS  +   D+      L+ +R N+
Sbjct:   11 VLHLLRTTHRSAARLLQARIDPHGVTLGMWYFLRVLWEEDGLTQRELSQRVGTVEPTTVTAINAMVARGLVRREANPADRRKRHIHLTEEGRWLRATLLPHAAEVNRIASRGIPDADMARLRTALAAMRRNV 142          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A0M2P7F7_9BACI (HTH marR-type domain-containing protein n=1 Tax=Bacillus sp. SA1-12 TaxID=1455638 RepID=A0A0M2P7F7_9BACI)

HSP 1 Score: 55.5 bits (132), Expect = 7.100e-7
Identity = 30/102 (29.41%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  124 ILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK 429
            ILR  W   G T   +AE   +  S  SQ I ++   G+++R++D +D R +IVKLT+ G+E    + NA +++       +++E+    ++++ K+ + LK
Sbjct:   42 ILRFLWKHDGSTIGQLAERLEVRSSSMSQMIDRLELAGMVYRESDKNDARTRIVKLTEAGKETITKMKNAQVELLSGPFNQLTSEEQTALVEIMMKMTSQLK 143          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A522JZC7_9BURK (MarR family transcriptional regulator n=1 Tax=Candidimonas sp. TaxID=1912597 RepID=A0A522JZC7_9BURK)

HSP 1 Score: 55.1 bits (131), Expect = 9.580e-7
Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 1
Query:   73 ALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNL 426
            AL   L +  IS G +  LRI W   G TQ++++E+A +TP   S  +  + ++G + R    D+ +   V LTK GR  K  L     ++   A   + +E +Q   +VL K+  NL
Sbjct:    4 ALQIRLGEHSISFGHWSYLRILWEHDGLTQRELSEIAGVTPPTTSLAMNAIESLGYVKRVKKPDNKKNIYVYLTKAGRALKEKLQPLAEEVNAIAINGLESEKVQIAREVLLKIIANL 121          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A2E9DFK5_9GAMM (MarR family transcriptional regulator n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A2E9DFK5_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 2.390e-6
Identity = 39/134 (29.10%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   25 EDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNL 426
            E IA+ +R   R F N+L   L    ++ GF+  LR  W E G +Q+D++E   +T    +  I++M A GL+  +   +   +++V LTK GRE +  L     ++   A   +  E++    ++L ++ TNL
Sbjct:   25 ERIAHIIRQCARDFYNSLEKRLQPYGVNHGFWAYLRELWVEEGISQRDLSERVGLTGPTTNSVIKRMEAAGLVELRPIVEGKPRRVVYLTKRGRELRDILEPLAKEVNDIAVAGMEHEEVVLIRNLLLRIHTNL 158          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: UPI001FBBA390 (MarR family transcriptional regulator n=1 Tax=Novosphingobium sp. 2580 TaxID=2930093 RepID=UPI001FBBA390)

HSP 1 Score: 51.6 bits (122), Expect = 1.990e-5
Identity = 38/129 (29.46%), Postives = 65/129 (50.39%), Query Frame = 1
Query:   40 EVRGTFRAFANALITELADADIS----VGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKL 414
            ++ G  R++       LA  +IS        H+ R+     G  Q D+A    +T +   + +Q +  +GL+ R+ D  D R K ++LT  GR   R +   ++++      DVS+EDLQTTL+VL ++
Sbjct:   14 QILGLARSWRQLADRVLASLEISNSTGYALLHLERLG---DGVRQSDLAREIGITEASLVRTLQHLERVGLVCREADPGDGRAKALRLTADGRRLARLIDTRLIELRHELLHDVSSEDLQTTLNVLERV 139          
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: UPI000E5C9103 (MarR family transcriptional regulator n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI000E5C9103)

HSP 1 Score: 50.1 bits (118), Expect = 9.190e-5
Identity = 28/96 (29.17%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   22 REDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAE-LAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGR 306
            R+ +  ++R   RA+   L   LA+  +++G ++ L   W E G +Q+ ++  +  M P+  S  + +M   GL+ RQ D  D R+++V+LT++G+
Sbjct:   24 RDGVGAKLRDAHRAYNRLLQARLAEEGVTLGMWYFLCALWQEDGISQRQLSRRVGTMEPTTVSA-LAQMERRGLVQRQRDPMDQRRRVVRLTRVGK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI00040BC3111.140e-5667.83winged helix DNA-binding protein n=1 Tax=Hellea ba... [more]
UPI001C4C5BCE1.440e-1432.12winged helix DNA-binding protein n=1 Tax=Sphingobi... [more]
A0A1U7DHK0_9RHOB7.330e-927.69MarR family transcriptional regulator n=1 Tax=Brev... [more]
A0A1Y6B2G3_9HYPH3.350e-827.94DNA-binding transcriptional regulator, MarR family... [more]
A0A7V9PCL2_9ACTN3.440e-725.76MarR family transcriptional regulator n=1 Tax=Acid... [more]
A0A0M2P7F7_9BACI7.100e-729.41HTH marR-type domain-containing protein n=1 Tax=Ba... [more]
A0A522JZC7_9BURK9.580e-731.36MarR family transcriptional regulator n=1 Tax=Cand... [more]
A0A2E9DFK5_9GAMM2.390e-629.10MarR family transcriptional regulator n=2 Tax=Ocea... [more]
UPI001FBBA3901.990e-529.46MarR family transcriptional regulator n=1 Tax=Novo... [more]
UPI000E5C91039.190e-529.17MarR family transcriptional regulator n=1 Tax=Algi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102302contigP-canaliculata_contig102302:318..749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score185.3
Seed ortholog evalue2.1e-44
Seed eggNOG ortholog1121948.AUAC01000011_gene692
EggNOG free text desc.helix_turn_helix multiple antibiotic resistance protein
EggNOG OGs1REBI@1224,2VAEX@28211,440H4@69657,COG1846@1,COG1846@2
COG Functional cat.K
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.9826312-CDS-P-canaliculata_contig102302:317..7491622815596.9826312-CDS-P-canaliculata_contig102302:317..749Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102302 318..749 +
1693494157.4636853-CDS-P-canaliculata_contig102302:317..7491693494157.4636853-CDS-P-canaliculata_contig102302:317..749Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102302 318..749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102302.366.1prot_P-canaliculata_contig102302.366.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102302 318..749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102302.366.1

>prot_P-canaliculata_contig102302.366.1 ID=prot_P-canaliculata_contig102302.366.1|Name=mRNA_P-canaliculata_contig102302.366.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
MQLSGNPREDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPES
GRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKM
GREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK*
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mRNA from alignment at P-canaliculata_contig102302:318..749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102302.366.1 ID=mRNA_P-canaliculata_contig102302.366.1|Name=mRNA_P-canaliculata_contig102302.366.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig102302:318..749+ (Pelvetia canaliculata dioecious)
ATGCAACTTTCAGGTAATCCCCGCGAGGACATCGCCTATGAGGTCAGAGG CACGTTCCGCGCCTTCGCGAATGCCCTCATAACAGAGCTGGCAGACGCCG ATATATCCGTCGGATTTTTTCACATCCTACGTATTTCTTGGCCGGAGTCA GGCCGCACGCAGAAAGATATCGCAGAGCTGGCCTTTATGACACCCAGTGT CGCCTCTCAGCAGATCCAAAAAATGTGCGCGATTGGATTATTGCACAGGC AGACCGACTCTGACGATACGCGGAAAAAAATCGTAAAGCTTACAAAAATG GGCCGCGAGAAAAAACGGGGCTTGGTCAACGCCATGTTGGATATTCCAAG AAGCGCCAGCGAGGATGTCTCAACTGAGGATCTCCAAACCACACTCGATG TGTTGAGCAAGTTAAGAACGAACTTGAAGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102302:318..749+

>mRNA_P-canaliculata_contig102302.366.1 ID=mRNA_P-canaliculata_contig102302.366.1|Name=mRNA_P-canaliculata_contig102302.366.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig102302:318..749+ (Pelvetia canaliculata dioecious)
ATGCAACTTTCAGGTAATCCCCGCGAGGACATCGCCTATGAGGTCAGAGG
CACGTTCCGCGCCTTCGCGAATGCCCTCATAACAGAGCTGGCAGACGCCG
ATATATCCGTCGGATTTTTTCACATCCTACGTATTTCTTGGCCGGAGTCA
GGCCGCACGCAGAAAGATATCGCAGAGCTGGCCTTTATGACACCCAGTGT
CGCCTCTCAGCAGATCCAAAAAATGTGCGCGATTGGATTATTGCACAGGC
AGACCGACTCTGACGATACGCGGAAAAAAATCGTAAAGCTTACAAAAATG
GGCCGCGAGAAAAAACGGGGCTTGGTCAACGCCATGTTGGATATTCCAAG
AAGCGCCAGCGAGGATGTCTCAACTGAGGATCTCCAAACCACACTCGATG
TGTTGAGCAAGTTAAGAACGAACTTGAAGTAGATGCAACTTTCAGGTAAT
CCCCGCGAGGACATCGCCTATGAGGTCAGAGGCACGTTCCGCGCCTTCGC
GAATGCCCTCATAACAGAGCTGGCAGACGCCGATATATCCGTCGGATTTT
TTCACATCCTACGTATTTCTTGGCCGGAGTCAGGCCGCACGCAGAAAGAT
ATCGCAGAGCTGGCCTTTATGACACCCAGTGTCGCCTCTCAGCAGATCCA
AAAAATGTGCGCGATTGGATTATTGCACAGGCAGACCGACTCTGACGATA
CGCGGAAAAAAATCGTAAAGCTTACAAAAATGGGCCGCGAGAAAAAACGG
GGCTTGGTCAACGCCATGTTGGATATTCCAAGAAGCGCCAGCGAGGATGT
CTCAACTGAGGATCTCCAAACCACACTCGATGTGTTGAGCAAGTTAAGAA
CGAACTTGAAGTAG
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