mRNA_P-canaliculata_contig102252.357.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102252.357.1
Unique NamemRNA_P-canaliculata_contig102252.357.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A7C3MRH5_9FIRM (Uncharacterized protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C3MRH5_9FIRM)

HSP 1 Score: 75.1 bits (183), Expect = 5.340e-13
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   61 LAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQPEPEVDFKTRNYL-GSELLDRYIEQNYSLVKQVGDYWVYQK 420
            L A++FI   T  ++ +++G + H R+F+++I  Y+   R    + + L PGL T   +Q ++I +LK+ NV++IVLWS  E   +    +   G  LLD +I  NY+ V   G Y + QK
Sbjct:  472 LTAIRFIQANTKPDEPIFVGNSRHDRIFVNDIMFYFLAERHSATKYHELHPGLATTEEVQLEIIDELKRKNVKFIVLWSGAENVTEPNESSLSSGVTLLDDFIRMNYAPVMYFGPYKILQK 592          
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A1V5RNY9_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium ADurb.Bin325 TaxID=1852859 RepID=A0A1V5RNY9_9CHLR)

HSP 1 Score: 72.4 bits (176), Expect = 4.590e-12
Identity = 36/126 (28.57%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   52 PDELAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIV---LWSQPEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQK 420
            PD+  A+  + +R   ++Y+Y+GV  H ++F +++  Y+  GR+   +   L PGL     +Q +++ +L+  +V WIV   +W   EP    ++    G  LLD YI Q Y     +G Y ++++
Sbjct:  429 PDQEQAVLALQRRAAADEYIYVGVHRHDKLFANDVLFYFLAGRRPATKYTELHPGLANTLPVQQEIVDELQAKDVRWIVTYQIWDSNEPNTSAEST---GVVLLDDYIRQRYRATVTLGGYQIWER 551          
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A522FQ47_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A522FQ47_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.620e-8
Identity = 31/118 (26.27%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   67 ALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQPEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQK 420
            A+ ++     + + +++G   H R+ ++++  Y+  G+    + + L PG+ T   +Q ++I  L+KNNV ++VL    E     ++    G  +LD +I  NY+L KQ G   +++K
Sbjct:  420 AVNYLKFSIPQNEKIFVGNYSHDRILLNDLMFYFLSGKDACTKYHELHPGIATTHKVQKEIINDLQKNNVNYLVLCENNEFTEQNESSISSGVFVLDNFIHDNYALYKQFGTNQIWKK 537          
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A3N0ZUF8_9BACT (PMT_2 domain-containing protein n=1 Tax=Bacteroidetes/Chlorobi group bacterium ChocPot_Mid TaxID=2382230 RepID=A0A3N0ZUF8_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 5.760e-7
Identity = 31/120 (25.83%), Postives = 62/120 (51.67%), Query Frame = 1
Query:   70 LQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQPEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQKSNK 429
            + ++ +   + + + +    H +V ++++  Y+  GR    R +   PG+TT   +Q ++I++L+K NV++IV     E     K+R      LLD +I+ NY  + + G Y +  K +K
Sbjct:  435 VNYLRRNVDENNKILVANYFHDKVLMNDLMIYYLSGRNSATRYHEFHPGITTRADVQKEIISELRKWNVDFIVQCPNTEFPEPNKSRVSSRVFLLDSFIDSNYIQINKFGGYKILFKKSK 554          
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: UPI001992D918 (Uncharacterized protein n=1 Tax=Blastomonas aquatica TaxID=1510276 RepID=UPI001992D918)

HSP 1 Score: 56.6 bits (135), Expect = 1.340e-6
Identity = 33/121 (27.27%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   49 NPDELAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQ----PEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVG 399
            N D +   ++I   + + + +++G+  H ++FI+ +  Y    R  G   +  +PGL T   IQ Q+IA L++N V W+V  S      EP    ++    G  +LD ++ + Y  V   G
Sbjct:  255 NADYIRTGRYIRAHSRESEKIFVGLNRHDKIFINPMILYHAADRLPGTHWHHFDPGLQTRADIQRQVIADLRRNRVRWVVRDSSFDDVAEPNASARSS---GVGILDDFLAEQYRPVASSG 372          
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: UPI00166838BE (hypothetical protein n=1 Tax=Blastomonas aquatica TaxID=1510276 RepID=UPI00166838BE)

HSP 1 Score: 56.6 bits (135), Expect = 1.470e-6
Identity = 33/121 (27.27%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   49 NPDELAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQ----PEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVG 399
            N D +   ++I   + + + +++G+  H ++FI+ +  Y    R  G   +  +PGL T   IQ Q+IA L++N V W+V  S      EP    ++    G  +LD ++ + Y  V   G
Sbjct:  458 NADYIRTGRYIRAHSRESEKIFVGLNRHDKIFINPMILYHAADRLPGTHWHHFDPGLQTRADIQRQVIADLRRNRVRWVVRDSSFDDVAEPNASARSS---GVGILDDFLAEQYRPVASSG 575          
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A432LQH5_9GAMM (Uncharacterized protein n=1 Tax=Dyella dinghuensis TaxID=1920169 RepID=A0A432LQH5_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 1.980e-6
Identity = 34/129 (26.36%), Postives = 66/129 (51.16%), Query Frame = 1
Query:   52 PDELAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIV----LWSQPEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQKSN 426
            P  L   ++I++ T + + + +G+  H ++FI+ +  Y+   R  G R    +PG+     IQ +MI  LK+N+V ++V      S+ EP    ++    G  LLD Y+   Y  + + G+  V+ +++
Sbjct:  423 PPYLLVGRYINRHTDQNERILVGLDRHDKIFINPMSLYYASDRLPGTRWSQYDPGIQNSQEIQGEMIKDLKRNDVRYVVRDTSFDSKKEPN---ESAISTGVHLLDYYLAAQYRPIAKSGNVQVWLRND 548          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7C3MRH5_9FIRM5.340e-1333.88Uncharacterized protein n=1 Tax=Firmicutes bacteri... [more]
A0A1V5RNY9_9CHLR4.590e-1228.57Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A522FQ47_9BACT2.620e-826.27Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A3N0ZUF8_9BACT5.760e-725.83PMT_2 domain-containing protein n=1 Tax=Bacteroide... [more]
UPI001992D9181.340e-627.27Uncharacterized protein n=1 Tax=Blastomonas aquati... [more]
UPI00166838BE1.470e-627.27hypothetical protein n=1 Tax=Blastomonas aquatica ... [more]
A0A432LQH5_9GAMM1.980e-626.36Uncharacterized protein n=1 Tax=Dyella dinghuensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102252contigP-canaliculata_contig102252:70..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue3.3e-10
Seed eggNOG ortholog706587.Desti_1501
EggNOG free text desc.Dolichyl-phosphate-mannose-protein mannosyltransferase
EggNOG OGs1Q6N9@1224,2WXMF@28221,433F2@68525,COG1807@1,COG1807@2
COG Functional cat.M
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.0527818-CDS-P-canaliculata_contig102252:69..5011622815596.0527818-CDS-P-canaliculata_contig102252:69..501Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102252 70..501 -
1693494156.8691487-CDS-P-canaliculata_contig102252:69..5011693494156.8691487-CDS-P-canaliculata_contig102252:69..501Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102252 70..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102252.357.1prot_P-canaliculata_contig102252.357.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102252 70..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102252.357.1

>prot_P-canaliculata_contig102252.357.1 ID=prot_P-canaliculata_contig102252.357.1|Name=mRNA_P-canaliculata_contig102252.357.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
MSADLPLSEPEAKLYDNPDELAALQFIHQRTTKEDYVYIGVTDHARVFIS
NIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQ
PEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQKSNK*
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mRNA from alignment at P-canaliculata_contig102252:70..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102252.357.1 ID=mRNA_P-canaliculata_contig102252.357.1|Name=mRNA_P-canaliculata_contig102252.357.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig102252:70..501- (Pelvetia canaliculata dioecious)
ATGTCAGCCGATCTGCCTCTATCAGAACCCGAAGCCAAACTTTACGATAA CCCCGATGAATTAGCTGCCCTACAGTTTATTCACCAGCGTACGACTAAAG AAGATTATGTCTATATTGGCGTAACAGATCATGCACGGGTCTTTATATCT AACATTAAACCTTACTGGGAACTAGGACGAAAAATCGGCGTGAGGGACTA CACCCTAGAACCAGGATTGACTACCGAACCAGCGATTCAAAACCAAATGA TCGCTCAATTAAAAAAGAACAATGTCGAATGGATTGTTCTTTGGTCACAG CCAGAACCAGAAGTGGACTTCAAAACCAGAAATTATCTCGGCTCGGAATT ATTAGATCGCTATATCGAGCAAAACTATTCTTTGGTCAAACAAGTCGGTG ACTACTGGGTCTATCAGAAATCCAATAAGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102252:70..501-

>mRNA_P-canaliculata_contig102252.357.1 ID=mRNA_P-canaliculata_contig102252.357.1|Name=mRNA_P-canaliculata_contig102252.357.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig102252:70..501- (Pelvetia canaliculata dioecious)
ATGTCAGCCGATCTGCCTCTATCAGAACCCGAAGCCAAACTTTACGATAA
CCCCGATGAATTAGCTGCCCTACAGTTTATTCACCAGCGTACGACTAAAG
AAGATTATGTCTATATTGGCGTAACAGATCATGCACGGGTCTTTATATCT
AACATTAAACCTTACTGGGAACTAGGACGAAAAATCGGCGTGAGGGACTA
CACCCTAGAACCAGGATTGACTACCGAACCAGCGATTCAAAACCAAATGA
TCGCTCAATTAAAAAAGAACAATGTCGAATGGATTGTTCTTTGGTCACAG
CCAGAACCAGAAGTGGACTTCAAAACCAGAAATTATCTCGGCTCGGAATT
ATTAGATCGCTATATCGAGCAAAACTATTCTTTGGTCAAACAAGTCGGTG
ACTACTGGGTCTATCAGAAATCCAATAAGTAGATGTCAGCCGATCTGCCT
CTATCAGAACCCGAAGCCAAACTTTACGATAACCCCGATGAATTAGCTGC
CCTACAGTTTATTCACCAGCGTACGACTAAAGAAGATTATGTCTATATTG
GCGTAACAGATCATGCACGGGTCTTTATATCTAACATTAAACCTTACTGG
GAACTAGGACGAAAAATCGGCGTGAGGGACTACACCCTAGAACCAGGATT
GACTACCGAACCAGCGATTCAAAACCAAATGATCGCTCAATTAAAAAAGA
ACAATGTCGAATGGATTGTTCTTTGGTCACAGCCAGAACCAGAAGTGGAC
TTCAAAACCAGAAATTATCTCGGCTCGGAATTATTAGATCGCTATATCGA
GCAAAACTATTCTTTGGTCAAACAAGTCGGTGACTACTGGGTCTATCAGA
AATCCAATAAGTAG
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