mRNA_P-canaliculata_contig10221.350.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10221.350.1
Unique NamemRNA_P-canaliculata_contig10221.350.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: A0A6A6PLG2_9PEZI (Putative 60S ribosomal protein L38 n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PLG2_9PEZI)

HSP 1 Score: 108 bits (271), Expect = 2.550e-29
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:   64 MPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPP 261
            MPREI DIKTFIEICRRKDA S R+KK+K G TTQTKFKVRC RYLYTLVLKD+DKA+KL+QSLPP
Sbjct:    1 MPREIQDIKTFIEICRRKDASSTRVKKNKIGNTTQTKFKVRCKRYLYTLVLKDSDKADKLRQSLPP 66
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BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: UPI000CE262DF (60S ribosomal protein L38-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE262DF)

HSP 1 Score: 108 bits (269), Expect = 3.010e-28
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:   43 PHQSSPTMPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPP 261
            P   SP MP++I DIKTFIE+CRRKDA SARIKKS+  AT QTKFKVRC RYLYTLVLKD+DKA+KLKQSLPP
Sbjct:   40 PKSKSPNMPQQISDIKTFIELCRRKDASSARIKKSR--ATGQTKFKVRCQRYLYTLVLKDSDKADKLKQSLPP 110
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BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: A0A6J3M7K0_9PEZI (ribosomal protein L38e n=1 Tax=Dissoconium aciculare CBS 342.82 TaxID=1314786 RepID=A0A6J3M7K0_9PEZI)

HSP 1 Score: 105 bits (263), Expect = 6.570e-28
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:   64 MPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPP 261
            MPREI DIKTFIEICRRKDA SARIKK+K   T QTKFKVRC RYLYTLVLKD+DKAEKLKQSLPP
Sbjct:    1 MPREISDIKTFIEICRRKDASSARIKKNK--VTNQTKFKVRCQRYLYTLVLKDSDKAEKLKQSLPP 64
[Close]
BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: M3ATF7_PSEFD (Uncharacterized protein n=2 Tax=Pseudocercospora TaxID=131324 RepID=M3ATF7_PSEFD)

HSP 1 Score: 105 bits (261), Expect = 1.400e-27
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:   64 MPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPP 261
            MP+E+ DIK+FIEICRRKDA SARIKK+K G   QTKFKVRC+R+LYTLVLKD+DKAEKLKQSLPP
Sbjct:    1 MPKEVTDIKSFIEICRRKDASSARIKKNKVGNKEQTKFKVRCHRFLYTLVLKDSDKAEKLKQSLPP 66
[Close]
BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: A0A4S2MQ18_9PEZI (Uncharacterized protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MQ18_9PEZI)

HSP 1 Score: 104 bits (259), Expect = 5.450e-27
Identity = 52/67 (77.61%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:   61 TMPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPP 261
            TMP+++HDIK FIE+CRRKDA++ARIKKS KG++ Q KFKVRC+R+LYTLVLKD DKAEKLKQSLPP
Sbjct:   33 TMPKQVHDIKQFIELCRRKDAKAARIKKSTKGSS-QVKFKVRCHRHLYTLVLKDTDKAEKLKQSLPP 98
[Close]
BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: M2Y1U8_DOTSN (Uncharacterized protein n=1 Tax=Dothistroma septosporum (strain NZE10 / CBS 128990) TaxID=675120 RepID=M2Y1U8_DOTSN)

HSP 1 Score: 103 bits (256), Expect = 7.650e-27
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:   64 MPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPP 261
            MP+EI+DIK FIE+CRRKDA SARIKK+K  AT QTKFKVRC RYLYTL LKD+DKAEKLKQSLPP
Sbjct:    1 MPKEINDIKAFIEVCRRKDASSARIKKNK--ATNQTKFKVRCQRYLYTLTLKDSDKAEKLKQSLPP 64
[Close]
BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: A0A2T3BAA8_AMORE (Uncharacterized protein n=1 Tax=Amorphotheca resinae ATCC 22711 TaxID=857342 RepID=A0A2T3BAA8_AMORE)

HSP 1 Score: 102 bits (254), Expect = 1.380e-26
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:   64 MPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPPS 264
            MPREI DIK FIEICRRKDA SARIK+SKK  TT  KFKVRC R+LYTLVLKDA+KAEKLKQSLPPS
Sbjct:    1 MPREISDIKNFIEICRRKDASSARIKRSKK--TTHIKFKVRCQRHLYTLVLKDAEKAEKLKQSLPPS 65
[Close]
BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: A0A5N5D1K0_9PEZI (60S ribosomal protein L38 n=5 Tax=Botryosphaeriaceae TaxID=45131 RepID=A0A5N5D1K0_9PEZI)

HSP 1 Score: 102 bits (254), Expect = 1.420e-26
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:   64 MPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPP 261
            MP E+ DIK FIEICRRKDA SARIKK+KK +  QTKFKVRC+RYLYTLVLKD+DKAEKLKQSLPP
Sbjct:    1 MPSEVSDIKQFIEICRRKDASSARIKKNKKNS--QTKFKVRCHRYLYTLVLKDSDKAEKLKQSLPP 64
[Close]
BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: M2LC23_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2LC23_BAUPA)

HSP 1 Score: 102 bits (254), Expect = 1.540e-26
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:   64 MPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPPS 264
            MP+E+ DIKTFIEICRRKDA SARIKK++  AT QTKFKVRC RYLYTLVLKD+DKAEKL+QSLPP+
Sbjct:    1 MPQEVSDIKTFIEICRRKDASSARIKKNR--ATHQTKFKVRCKRYLYTLVLKDSDKAEKLRQSLPPN 65
[Close]
BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Match: A0A2G5HEG9_CERBT (60S ribosomal protein L38 n=4 Tax=Cercospora TaxID=29002 RepID=A0A2G5HEG9_CERBT)

HSP 1 Score: 102 bits (253), Expect = 2.320e-26
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   64 MPREIHDIKTFIEICRRKDARSARIKKSKKGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPP 261
            MPRE+ DIK+FIEICRRKDA SARIKK++     QTKFKVRC R+LYTLVLKD DKAEKLKQSLPP
Sbjct:    1 MPREVTDIKSFIEICRRKDASSARIKKNRSAGINQTKFKVRCQRHLYTLVLKDNDKAEKLKQSLPP 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10221.350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6PLG2_9PEZI2.550e-2983.33Putative 60S ribosomal protein L38 n=1 Tax=Neohort... [more]
UPI000CE262DF3.010e-2878.0860S ribosomal protein L38-like n=1 Tax=Quercus sub... [more]
A0A6J3M7K0_9PEZI6.570e-2886.36ribosomal protein L38e n=1 Tax=Dissoconium acicula... [more]
M3ATF7_PSEFD1.400e-2780.30Uncharacterized protein n=2 Tax=Pseudocercospora T... [more]
A0A4S2MQ18_9PEZI5.450e-2777.61Uncharacterized protein n=1 Tax=Ascodesmis nigrica... [more]
M2Y1U8_DOTSN7.650e-2781.82Uncharacterized protein n=1 Tax=Dothistroma septos... [more]
A0A2T3BAA8_AMORE1.380e-2683.58Uncharacterized protein n=1 Tax=Amorphotheca resin... [more]
A0A5N5D1K0_9PEZI1.420e-2681.8260S ribosomal protein L38 n=5 Tax=Botryosphaeriace... [more]
M2LC23_BAUPA1.540e-2680.60Uncharacterized protein n=1 Tax=Baudoinia panameri... [more]
A0A2G5HEG9_CERBT2.320e-2678.7960S ribosomal protein L38 n=4 Tax=Cercospora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10221contigP-canaliculata_contig10221:4658..5025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score106.7
Seed ortholog evalue6.4e-21
Seed eggNOG ortholog310453.XP_007581434.1
Preferred nameRPL38
KEGG koko:K02923
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein eL38 family
EggNOG OGs202UX@147541,3A8NK@33154,3P6UD@4751,3QXEW@4890,KOG3499@1,KOG3499@2759
COG Functional cat.J
Best tax levelDothideomycetes
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.7486935-CDS-P-canaliculata_contig10221:4657..47841622815595.7486935-CDS-P-canaliculata_contig10221:4657..4784Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 4658..4784 +
1693494156.7631044-CDS-P-canaliculata_contig10221:4657..47841693494156.7631044-CDS-P-canaliculata_contig10221:4657..4784Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 4658..4784 +
1622815595.7643404-CDS-P-canaliculata_contig10221:4855..50251622815595.7643404-CDS-P-canaliculata_contig10221:4855..5025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 4856..5025 +
1693494156.7742522-CDS-P-canaliculata_contig10221:4855..50251693494156.7742522-CDS-P-canaliculata_contig10221:4855..5025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 4856..5025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10221.350.1prot_P-canaliculata_contig10221.350.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10221 4658..5025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10221.350.1

>prot_P-canaliculata_contig10221.350.1 ID=prot_P-canaliculata_contig10221.350.1|Name=mRNA_P-canaliculata_contig10221.350.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=99bp
GHNTSTRTTYRRQTPHQSSPTMPREIHDIKTFIEICRRKDARSARIKKSK
KGATTQTKFKVRCYRYLYTLVLKDADKAEKLKQSLPPSEPSPRSQRLPG
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mRNA from alignment at P-canaliculata_contig10221:4658..5025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10221.350.1 ID=mRNA_P-canaliculata_contig10221.350.1|Name=mRNA_P-canaliculata_contig10221.350.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=368bp|location=Sequence derived from alignment at P-canaliculata_contig10221:4658..5025+ (Pelvetia canaliculata dioecious)
GGCCACAACACTTCGACCCGGACTACCTACCGCAGACAGACCCCCCACCA
ATCGTCGCCCACCATGCCTCGCGAGATTCACGACATCAAGACGTTCATTG
AGATCTGTCGGCGCAAGGACGCCCGCTGTACGTGTCGGCGACTGGCAGAC
CCGCGCGCGAGGAACTCTCCGCTGATGGTGTGTGGTGGTGGTTCGCAGCG
GCGCGGATAAAGAAGAGCAAGAAGGGCGCGACGACGCAGACCAAGTTCAA
GGTCCGGTGCTATCGGTACCTCTACACGTTGGTCTTGAAGGACGCCGACA
AGGCCGAAAAGCTCAAACAAAGCCTTCCGCCGAGTGAGCCAAGCCCAAGG
TCCCAAAGGCTTCCAGGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10221:4658..5025+

>mRNA_P-canaliculata_contig10221.350.1 ID=mRNA_P-canaliculata_contig10221.350.1|Name=mRNA_P-canaliculata_contig10221.350.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at P-canaliculata_contig10221:4658..5025+ (Pelvetia canaliculata dioecious)
GGCCACAACACTTCGACCCGGACTACCTACCGCAGACAGACCCCCCACCA
ATCGTCGCCCACCATGCCTCGCGAGATTCACGACATCAAGACGTTCATTG
AGATCTGTCGGCGCAAGGACGCCCGCTGGCCACAACACTTCGACCCGGAC
TACCTACCGCAGACAGACCCCCCACCAATCGTCGCCCACCATGCCTCGCG
AGATTCACGACATCAAGACGTTCATTGAGATCTGTCGGCGCAAGGACGCC
CGCTCGGCGCGGATAAAGAAGAGCAAGAAGGGCGCGACGACGCAGACCAA
GTTCAAGGTCCGGTGCTATCGGTACCTCTACACGTTGGTCTTGAAGGACG
CCGACAAGGCCGAAAAGCTCAAACAAAGCCTTCCGCCGAGTGAGCCAAGC
CCAAGGTCCCAAAGGCTTCCAGGACGGCGCGGATAAAGAAGAGCAAGAAG
GGCGCGACGACGCAGACCAAGTTCAAGGTCCGGTGCTATCGGTACCTCTA
CACGTTGGTCTTGAAGGACGCCGACAAGGCCGAAAAGCTCAAACAAAGCC
TTCCGCCGAGTGAGCCAAGCCCAAGGTCCCAAAGGCTTCCAGGA
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