mRNA_P-canaliculata_contig10216.342.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10216.342.1
Unique NamemRNA_P-canaliculata_contig10216.342.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A6H5KBP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP8_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 1.290e-96
Identity = 162/247 (65.59%), Postives = 188/247 (76.11%), Query Frame = 1 
Query:    1 ATSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLP--------GFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLT 717
            AT+LV+DEADMLMEGSY++QLDDILV+FRRAD++  E G          G ++TQYVLAAATLPTYGLKSVDQY+KRAFP A KIQQVHMH+HHPAIQQ F+EVG  + DKI+AV++LLR  DT  SE + +RTMVF NTA+SCK A EALAEEGFS V YHK++ P +RL NL AL+SG AKILVCTDLA+RGIDVPSVT IVQMEMATNVV HL              ATNF+D  TK     +T
Sbjct:  186 ATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGSVVDGSVRRRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLR--DTV-SETDTSRTMVFTNTASSCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSIT 429
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BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: D7FR69_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR69_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 6.680e-95
Identity = 163/247 (65.99%), Postives = 189/247 (76.52%), Query Frame = 1 
Query:    1 ATSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMG--------LPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLT 717
            AT+LV+DEADMLMEGSY++QLDDILV+FRRAD++  E G          G ++TQYVLAAATLPTYGLKSVDQY+KRAFP A KIQQVHMH+HHPAIQQ F+EVG  + DKI+AV++LLR  DT  S+A+ +RTMVF NTAASCK A EALAEEGFS V YHK++ P +RL NL AL+SG AKILVCTDLA+RGIDVPSVT IVQMEMATNVV HL              ATNF+D  TK     +T
Sbjct:  386 ATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPIVDGRGRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLR--DTV-SDADTSRTMVFTNTAASCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSIT 629
[Close]
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: W7TS57_9STRA (RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS57_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.600e-48
Identity = 105/245 (42.86%), Postives = 139/245 (56.73%), Query Frame = 1 
Query:   10 LVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERT--------------------RTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFD 684
            LV+DEADML+EG Y R L+ ILV+F+RADK+      P    TQYVLAAATLP+YGLKSV++ VK+ FP A ++    MHKHHP + Q F+E  E +  KI  ++ +L    T   EA R                     +TMVF NTA +      A+   GF  V++HKEV   +R  NL+  +S    +LVCTDLA+RG+D+P V ++VQ+E A NVV HL              A NF+D
Sbjct:  345 LVVDEADMLLEGDYGRHLERILVAFKRADKLHTARSEP---LTQYVLAAATLPSYGLKSVEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVLEKLRTKGEEARRAEGGKEXXXXXEGEAQATILPKTMVFLNTATAAARTQIAVQAAGFPSVAFHKEVRREEREANLQRFRSNQVPLLVCTDLAARGLDIPDVRQVVQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYD 586
[Close]
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S4D991_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D991_HETAK)

HSP 1 Score: 167 bits (423), Expect = 1.790e-47
Identity = 99/220 (45.00%), Postives = 135/220 (61.36%), Query Frame = 1 
Query:    7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQ-----------AEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLL--RGGDTS*SEAERT-RTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
            +LV+DEADML++G Y  QLD ++V+ +R  ++            AE  L    R Q VLAAATLPTYGLKSVD YV++ F  A ++    MH+HHP + Q+FIEVG  + +KIEA++  L     +   + A  T R MVF NT A+ +    ALA EG    +YHK+  P +R   L   ++G + +LVCTDLA+RG+DVP VT ++Q E A NVV HL
Sbjct:   50 ALVLDEADMLLDGGYLAQLDKVMVALKRVGRMAETARGRYQDAYAEGALYTPARCQRVLAAATLPTYGLKSVDAYVRKHFKGAARVGTGLMHRHHPRLHQDFIEVGGSLGEKIEALLAYLDEEAAEGRGAGAPGTMRAMVFCNTVAAAEEVAAALAAEGVPCAAYHKKTPPAEREGALARFRAGESPVLVCTDLAARGLDVPGVTHVLQAEFAPNVVQHL 269
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BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S2R527_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R527_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.160e-41
Identity = 103/257 (40.08%), Postives = 143/257 (55.64%), Query Frame = 1 
Query:    7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTR-------------------TMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLTG 720
            ++V+DEADML++G Y  Q+D+ILV+ +R  +++ +        TQ +L+AAT+PTYGLKSVD+ V + FP A +++   +H+  P ++  ++EV E + D+ E       GG T  S A   R                   TMVFANTA +   ACE L + G     YHKEV    R ENL    SG   ILVCTD+A+RGID+  V  +VQ E A+NVV HL      XXXXX   AT+F D S+  ++    G
Sbjct:   22 AIVLDEADMLLDGGYLNQVDEILVARKRILRMRQQHEPVVDRHTQVILSAATIPTYGLKSVDKLVAKRFPNAARVENDLLHRTQPQLEHHWVEV-ESMGDERE-------GGATVGSRAFAARCLQLEELLRPATPSDPIPRTMVFANTATTAAAACEYLRKAGLPAAEYHKEVLVGIREENLGLFSSGQVPILVCTDMAARGIDIQGVQHVVQFEFASNVVQHLHRLGRTXXXXXQGTATHFVDPSSDLAERIRRG 270
[Close]
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S1D4C6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4C6_CYCTE)

HSP 1 Score: 146 bits (369), Expect = 1.080e-38
Identity = 88/217 (40.55%), Postives = 128/217 (58.99%), Query Frame = 1 
Query:    4 TSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK--------SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
            ++LV+DEADML++G Y R L+D+++ FRRADK+ +   +P   RTQ V  AATLP  G++SVD Y+++ FP+A ++    MH  KH+   ++      E   D++  +V+LL    T     E  + MVF N+      A  AL   G + V YH ++A RDR  NL   +          +A +LVCTDLASRG+D+P VT +VQ++ A NVV HL
Sbjct:   52 STLVVDEADMLLDGGYIRPLEDVMIGFRRADKLDSSHDVP---RTQNVFVAATLPDMGVRSVDAYLQKKFPYAQRVAMAGMHNAKHYGLRERTLWIEEEENRDRMLRLVDLLNKPTTE-GGLEGEKVMVFLNSVDDVDGAYGALKRAGIAVVPYHAKIALRDRTANLDRFRRYGAAEPGEDAAAVLVCTDLASRGLDIPGVTAVVQLQFAGNVVSHL 264
[Close]
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A0G4ESI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESI9_VITBC)

HSP 1 Score: 146 bits (369), Expect = 2.070e-37
Identity = 87/241 (36.10%), Postives = 138/241 (57.26%), Query Frame = 1 
Query:    7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHIS--DKIEAVVNLL---------RGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTK 696
            +LV+DEAD+L++G YK+ L+ +L  FRR+ +     G P    TQ+++ AATLP  G  SVD +++R FP A +++   MH+H P +QQ+FI +G   S  D++  +V+ +         RGG+ +    +  +T++FANT  S K    AL + G   V  H ++   +R+ NL A + G + ILVCTDLA+RG+D+P +  ++Q + A NVV HL          X   A NF+   ++
Sbjct:  230 TLVVDEADLLLDGGYKKDLEAVLTVFRRSGR----QGAP----TQHIMVAATLPNRGSGSVDAFLERRFPEALRVRNSLMHQHLPGMQQDFIPIGYDASTRDRLNMLVDKVTEMQRDRASRGGEEA---VDVGKTIIFANTVNSAKAVANALFDVGIPVVPCHADLRAAERISNLDAFRRGISSILVCTDLAARGLDIPRIATVIQFDFAPNVVAHLHRVGRAARAGXAGHAINFYGKDSE 459
[Close]
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A1Z5JPU2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPU2_FISSO)

HSP 1 Score: 144 bits (364), Expect = 1.310e-36
Identity = 89/213 (41.78%), Postives = 132/213 (61.97%), Query Frame = 1 
Query:    7 SLVMDEADMLMEGSYKRQLDDILVSFRRADK-IQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK----SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
            SL++DEADML++G Y R L+ +L+ FRRAD+ I +    P    TQYV  AATLP  GL+SVD Y+K+ FP A  I   ++H  KH   ++ ++I + E   ++++AVV +L         +E  + M+F N+    + A  AL   G S + YH ++  ++R E L+A +    +G + ILVCTDLASRG+DVP VT ++Q++ ATNVV HL
Sbjct:  222 SLIVDEADMLLDGGYVRALEQVLMGFRRADRTIHSTEQRP----TQYVFVAATLPDSGLRSVDAYLKKKFPSAEYITTANLHNAKHEGLLETQWIAL-ESKQERMKAVVEMLSQHQQQ-QGSEGEKIMIFLNSVQDVENASAALQRAGVSVLRYHAKLNLQERTETLEAFRQSTANGQSSILVCTDLASRGLDVPDVTLVIQLQFATNVVTHL 428
[Close]
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A1E7F9N5_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9N5_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.420e-34
Identity = 77/213 (36.15%), Postives = 127/213 (59.62%), Query Frame = 1 
Query:   31 MLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTR---TMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK----------SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
            ML++G Y R L+++L+ F+RAD++ A++ +   ++TQ+V  AATLP  GLKSVD Y+++ FP+A++I    MH  KH+   Q+      E   +++E +V +L   D   ++ +  +   TMVF N+    +   +AL + G + V YH +++  +R ENL   +            +  +L+CTDLASRG+DVP VT +VQ++ + NVV HL
Sbjct:    1 MLLDGGYIRSLENVLMGFKRADRLSADLNV---KKTQHVFVAATLPDVGLKSVDAYLQKKFPYANRINTNDMHNAKHYGLSQETKWYQVETKKERMERLVEMLLSSDEDNADVDSLKGEKTMVFLNSVDDVESVHQALVQRGINAVPYHAKISLNERSENLDRFRRYDSDNNADAGDTVPVLICTDLASRGLDVPGVTAVVQLQFSGNVVSHL 210
[Close]
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A448ZNQ7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNQ7_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.080e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 1 
Query:    7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKI---QAEMGLPG-FERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLL--RGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAK-----------ILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
            +LV+DEADML++G Y R L+++L+ FRRAD++    A+   PG   +TQ++  AATLP  GLKSV+ Y++R FP+A++I+  +MH  KH+   +       E   +++E +  LL     + +    +  +TMVF N+    +   +AL + G   VSYH +++  +R ENL   +  S++           +LVCTDLASRG+DVP VT +VQ++ + NVV HL
Sbjct:  299 TLVVDEADMLLDGGYIRALENVLIGFRRADRLVDPSADPSDPGTIRKTQHIFCAATLPDVGLKSVNAYLERRFPYANRIETGNMHNAKHYGLSKATKWYQVETKKERMERLAELLVTERDENNEDGLKGEKTMVFLNSVDDVEGVHQALVQRGVDAVSYHAKISLNERSENLDRFRRFSSENEKDNDGDAVPVLVCTDLASRGLDVPGVTAVVQLQFSGNVVSHL 523
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBP8_9PHAE1.290e-9665.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR69_ECTSI6.680e-9565.99DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
W7TS57_9STRA2.600e-4842.86RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae... [more]
A0A7S4D991_HETAK1.790e-4745.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2R527_9STRA1.160e-4140.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1D4C6_CYCTE1.080e-3840.55Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A0G4ESI9_VITBC2.070e-3736.10Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A1Z5JPU2_FISSO1.310e-3641.78Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A1E7F9N5_9STRA3.420e-3436.15p-loop containing nucleoside triphosphate hydrolas... [more]
A0A448ZNQ7_9STRA5.080e-3438.22Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10216contigP-canaliculata_contig10216:4105..11615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog2880.D7FR69
KEGG koko:K14806
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009507,GO:0009536,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0333@2759,KOG0348@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-08_005190.1
Exons7
Model size729
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10216.342.1prot_P-canaliculata_contig10216.342.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10216 4105..9514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.0327659-CDS-P-canaliculata_contig10216:4104..42211622815595.0327659-CDS-P-canaliculata_contig10216:4104..4221Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10216 4105..4221 -
1693494156.3230526-CDS-P-canaliculata_contig10216:4104..42211693494156.3230526-CDS-P-canaliculata_contig10216:4104..4221Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10216 4105..4221 -
1622815595.046099-CDS-P-canaliculata_contig10216:4602..46601622815595.046099-CDS-P-canaliculata_contig10216:4602..4660Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10216 4603..4660 -
1693494156.3402534-CDS-P-canaliculata_contig10216:4602..46601693494156.3402534-CDS-P-canaliculata_contig10216:4602..4660Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10216 4603..4660 -
1622815595.0575874-CDS-P-canaliculata_contig10216:7074..72171622815595.0575874-CDS-P-canaliculata_contig10216:7074..7217Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10216 7075..7217 -
1693494156.348459-CDS-P-canaliculata_contig10216:7074..72171693494156.348459-CDS-P-canaliculata_contig10216:7074..7217Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10216 7075..7217 -
1622815595.0709248-CDS-P-canaliculata_contig10216:9481..95141622815595.0709248-CDS-P-canaliculata_contig10216:9481..9514Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10216 9482..9514 -
1693494156.3563325-CDS-P-canaliculata_contig10216:9481..95141693494156.3563325-CDS-P-canaliculata_contig10216:9481..9514Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10216 9482..9514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.0845287-UTR-P-canaliculata_contig10216:9514..95401622815595.0845287-UTR-P-canaliculata_contig10216:9514..9540Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10216 9515..9540 -
1693494156.3646784-UTR-P-canaliculata_contig10216:9514..95401693494156.3646784-UTR-P-canaliculata_contig10216:9514..9540Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10216 9515..9540 -
1622815595.0956798-UTR-P-canaliculata_contig10216:10268..103471622815595.0956798-UTR-P-canaliculata_contig10216:10268..10347Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10216 10269..10347 -
1693494156.373327-UTR-P-canaliculata_contig10216:10268..103471693494156.373327-UTR-P-canaliculata_contig10216:10268..10347Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10216 10269..10347 -
1622815595.105394-UTR-P-canaliculata_contig10216:10744..108721622815595.105394-UTR-P-canaliculata_contig10216:10744..10872Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10216 10745..10872 -
1693494156.3817813-UTR-P-canaliculata_contig10216:10744..108721693494156.3817813-UTR-P-canaliculata_contig10216:10744..10872Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10216 10745..10872 -
1622815595.1174815-UTR-P-canaliculata_contig10216:11470..116151622815595.1174815-UTR-P-canaliculata_contig10216:11470..11615Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10216 11471..11615 -
1693494156.3954616-UTR-P-canaliculata_contig10216:11470..116151693494156.3954616-UTR-P-canaliculata_contig10216:11470..11615Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10216 11471..11615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10216.342.1

>prot_P-canaliculata_contig10216.342.1 ID=prot_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKI
LVCTDLASRGIDVPSVTRIVQMEMATNVVHHLHRLGRAARAGRTGRATNF
FDSSTKASKECLTGPM*
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mRNA from alignment at P-canaliculata_contig10216:4105..11615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10216.342.1 ID=mRNA_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=7511bp|location=Sequence derived from alignment at P-canaliculata_contig10216:4105..11615- (Pelvetia canaliculata dioecious)
GCCACCTCCCTCGTAATGGACGAGGCCGACATGCTCATGGAAGGGAGCTA
CAAGAGGCAGCTGGATGATATCCTCGTGTCCTTCAGGCGAGCAGACAAGA
TCCAGGCGGAGATGGGGTTACCCGGCTTCGAGAGGACCCAGTACGGTGAT
CCGTCTCATTAAGGCTCTGCGGCCTGGACCGGGGGTGGATGGTTACAACA
TGCACCTAAAGCGATATTGAGGTTGATATCCTCCCCCGGAGGCTGAAAGT
TACGATTCCCTCGGGACTTAAAATTTGCCATCCTCTGGAGCTTAGAACTT
TCCATCCCCTCGGGACCTAGAACTTACCACACACACCCCGGAGCCTAGAA
TTTACCGTACCCCCGGGACCTTCAAGTTTTCATCCCCTCAGGGCCTGGGA
GCGTTACTGGGCGCCCCGGCAAACTTGGACTATGTACACCGTTTCCCCGT
TGGGATCCTGCGCACGTGGCTGGCCAATCCAGCAAAACGTGCCGTGCACC
TCATATCAGAAAATTTGATACCGAAAACTGTGTAGACAGGGGGGGCGGGG
GTAATGAAAAAAAATAATGTTCCGCGGTTCACCTGCTCTAAATATATATT
GAATTTTCTTGGCATGTACACTTCACGACACGATATTGTGCCCCCTCTAC
TCCCCCTGTCCTGCCCCCTCCTCCTCCGGGGCCGTTTTTCCTCTGTGGAA
ACCCCGCTGCTGGTGTTTATATATAATATGTGTGTATATGAAGTGCTGGC
GGCGGCGACCTTGCCTACGTACGGCCTGAAGTCAGTGGACCAGTACGTCA
AGAGGGCATTCCCCTTCGCCCACAAGATTCAACAAGTCCACATGCACAAG
CACCACCCCGCCATCCAGCAGGTGGGCTGTAATACCTTTTTCGCTTTGTA
GGGGGAGCGTTCTGCAGCAGAAATGGTTTAACAAACTTTGTTAACACGCG
CGTTGGGCGTCTATCTGATCTGGTACTAGATACTAAAGCAGTTTTTTTTT
TTTTTGGGGGGGGGGGGTAAAGACCAGTTGTTGGTCGGATGTACCCGCAT
TTAATGTCCCAACAAAAATATAACTTAGAGACCTCGAGAGATTTAGTGCG
GCGGATGGCAGACTGGCGATGGCGGATGCGGAGCTGCTTTGGTTGGTTTC
CGTTTCCTACATATTTACCCCCACTGACAAACGCCTCCGCCATGGCGTTC
GTCTTCTCCCCACACTATATATACGACACACATATATGTATACATATGCC
ATCTCTGGCGTCCCTCAGGAGTTCATAGAAGTTGGGGAGCATATTTCGGA
CAAGATCGAAGCTGTGGTCAACCTGCTCCGCGGAGGTGACACGTCTTGTT
TAGCTTTCAGCAGTAGGTTACCAGTCTTCATTTCGTGGTGCGGAGTATAT
TTTGTACGGTATCATTCGATTTGTGTTTTTACCTGTTACTGCTGTTGGAT
TTCGAGGCACTCTTGAACTATATTGTGGTGTCTTGCTTACCCTCCTGCCA
TTGTTGTTTGATGATCGAATGTTGTTGTTGGTGGTGGTGGTGGTGTTTTT
GCCCAGAGCGATTGTTTTGTTGTTTTAGATAGTTTTTTATCGGGTTTTCC
CTTGTCGGTGGAGCATTTTGTTGGATTTTTTCGCCCTTGGTAAGTGTAAA
GGTGTGCGTTCCTGTACACCCGAAGTGAAATCGATACATACCAGGTTTGT
AGTAAACGGGCAGAATGGGCAGAATGAGCGGATTAGGGGTTAGCACCGAC
CGCGGCAAACCTGGACTGGACCTCGGATGTCATAATGCCATGGCTTGCGA
CAAATGACATAACACGATATGGCACATGACATGGCCCATGATGTGACACA
TAATATGACACATGACATCACGCATGAAATGACACATGATATGACACATG
ACATCACCTATGACATGGCATGACATGCCACATATGGTATTAACCATTAC
GTCCACATATGGTATTAACCATTACGTGACTTATGACATAAAATGATAAT
GACACATAGCATGACACACACACGACATTGCATGTCATGACGCCATATCT
TGTCCTCGTTGGTCCTCTGTTCCAGAGAGCGAGGCGGAAAGGACTAGGAC
GATGGTATTCGCCAACACCGCTGCCTCGTGTAAGGTAAGGTTCGTAACAG
GAAACCTTGTGTGTGTGTGTGTGTGTTTATTAAATTGCACATGAACGCGC
AATCCGGCCCTGTAATCTAATCATTCTATGCTACTGCATGTAACCCACAT
GGGGGTTACTTATCGTAAACATATTCTTGGCTAGAAATGCGCGTATACAG
CTACAACTCCTCTCCCCACTACGAAGGCTCTCGGCCGGAACCTCACTCCA
TCGACATCAACTACAACGCTCTGTCCGGAGAAAAACATGAGACCGAAAAC
GCGGAAAATGGTGGACAGGCTTGTCCCCCTCTAACACACGGGTAAAGCTA
GTTGCTCGCCGCTTGGCGCAACAAATAGAGACGGGAATCCGGCAAACGGA
CCACCACGGCCAACTATCCTTGTAACCTTCCCCTCCAAACCCAACAGTTC
CGCCCCCCCCGTCAAACCGTGCAACGTACTGCAGCAGTGGTGTCATCATT
CCTCCCCCTTCCCCTTTCAGCACCCAATCGGTGCGTGTCCCGACTACACC
CGCACATTTTTCTTTCTACGTTAGAAAATCCCCCCCAGCCATAGGGCCCG
GGGTGGAACACCAACCGTAAGTCTTGCACTGGGCGCTAATCGTGAGGGCA
AGGAAAGAGTCAAGGTTAAAGCTAGTCGGAAACAAAGAAGCCGAATAGGG
TCTGCGCTCGTATGTATATGCCGGAACGTACAACATCGTGAGCGAAAACT
CCCCAAATCCACGAGAAATGCGCTCATTACTGCCGTCACGGTTGCTGTTG
TGCGTGTGTGTGTAATCCGGCCCTGTCATCCTTGTCGTTCTGTGCTACTC
GCCTTGGTCCTCCCAAGGGGTGTTAAGGGATCAATGATACTCCGATACTT
ATTACGAAAACCTCTGATCAGACGCGACAAAGGGGACACACTCTTTAATT
TTCTATCTTCAGTTGCTATCATTGTTATTAAGGAGGAGACACACGCCTTG
CGCCTCCCTCTATTATTTTTTGCCATTCTCTTCTCTAGATGTGTATCCTC
GGCCGACATCTACTGAACTCTCTTGTCTACGTTTTTTTACCTCCTACCGC
TAAAGTCTCCCCTGTGTGTGTGTGTGTAGCTGTATATATTTGAGTCAACA
TACCATGGTATATTGTTTTAGCGCTCAGTACTGGCTAGAGGTTGTTTATG
TAGTGACTGTTTGAACGTCGAGAGACTCCCGTGGTGTAGTGGGGTGTATC
GATACACAGTAGCTCTACACTACAATACCGGGGTAATATCAACTACCGGG
GTAATATCATCTACGGTAGAACTCAAAACGTAGACAAAAGCGGCCCCACT
TCATGTGCGTGGAAGTATGGCGTAGCCTTCTCATACTTGGAAGTGCTACT
AATAGTATTACATTACACCAGACTATTTTGAGCACAGGAAAACAATACTG
ATAATACTAAAGCGAAAAGCGTCAGACGACTCCCAAAAAGAATAACCGTT
ACAAAAACAGGACAGGTCTGTTATACAGTGTCGCCCGTATTGTGTTAAAT
GCTATGACACCTGGTATTTATTACTATTTATTACTATTATAGCGCTGACA
CGGCACCACTGTGTGGAGTGCCAAGAAGTGTGCTATTAATAGTATTAGTA
ATAGCACTGTAGGGAGGCATCAAGAGGGAAAGTAACGCCTTCTTTCTCCG
TTACTGGTACAATACAACAAGACGAACCAAGACAATGGACTTATCTTCCC
CCTTGAGATACATAAACATATTGTGGACGCCATCGCGGAAAGCTGGAGGA
ACCCCATAAGTAAGCGCCAGGTTCAGACCATTAGTATTAATAGAGACTGG
AGAATGAGCGGGCTGACGCAGGGCGGGACGGCCGAACCCCTCTCGCGAGA
CTTAGCTCTAGGGCGCGAACGCGGACAGGAAAAAAAATGTTTCCCCTGTT
CAGCTTGACGACGAGCAGGATTGGCAGCCATGCCCGGTTGATCCTTCCCG
TGCCGAAAGTACTGACCAGACATGCATACACGTAATGGCTGTAGAGAGTC
GTGTATCTTCGTTGTCGCGTACTTCCAGAGGTTTTCGTAACGAGAGCAAT
CAGTGATCCCCATTCGGAGGACCAAATACGAGTAGCGTAGAATAATGAGC
AAGACAGGGCTGGATTGCGAGGCTGTGCGCAATTTCATACTACACTCATA
TACACTTACCCTCAACCTTACGCTTACTACTTACGCTTACGCCTACACTT
ACGCTTACACTTACGCTTACCCGTACACTCAAAAACGTTTCTCCGCAGCT
GGCGTGCGAGGCTCTCGCCGAGGAAGGGTTCTCCTTCGTATCATACCACA
AGGAAGTGGCTCCCAGGGATCGCCTGGAGAATCTGAAGGCTCTCAAGAGC
GGGAGTGCCAAGATCCTCGTCTGCACCGACCTCGCCTCAAGGTACCTCTT
GCTTTTGTGTGATACACTAATGAGGAATGAGGGACCAGTCCAAATCGTTG
TACGAGTTACTCTGCCGGTAAGTCCACCGCCAGTCGGTGTTCGTCCACTA
TCGATCGGTATCAATGCACTACAAAATCGATATGAGTGCACCACGATCGG
TTGTCAAGATTCTCTCCCTCGTACGTTTTTTTAACGTTTTTATTTTATTT
TTGATTCGCACTTTCAGTGTATAGCCCTTGCAGCTGAAGACTACGGCGGC
ATATACAGTCAGCCCTAACCTATCAAACGTAAATCCCGATTGTGGTATTA
TAGAGGTGCGAAGGTCAACGGGTCACGTTATGGTGGGATCCAGCTATATT
TACAGGACTCAAACCAAAAGGGTTCCCAAATTTCGACAAAATCATCGTGC
GGCATAGCTAACCGAAAATCAGCTGAAACATCATATCCGCGTCACGACCA
AGCTCTTGGGGTATTACTGATAGTAACAATTACATTACAAGCCACAGAGA
ACACCGCTGTCTGATGTGCTGCTCATTTTACCAAGCCATGATCGAAAAGT
GGCTGCTGTACTACCGACACACAGCAGAGGAAGTTCCAGTGCTATCGCTA
AGTTACACACAGGAAATGCGACACTCCACAAGAAAAGACACCGACCAAAG
AAAATTCAGTCAATCAAATCTCCTTTTTCGACACCGAGCGTAACTCTGAT
CAACTTGGGCTGATGTTGCCCACCCACATCCAGCGTTATCAGCAACAAAA
CGGACAAATCATTATGTGTTGTACCGAGGTCTAAGGTAATGAAAACCTTG
CTGATCTGTGAAGACGGCGCCCGAGCCAACACCCGCCTGTCGAAAGCCCG
ATGTCCCCTTGGAAAGCGCCCCAAAAGTCTTACCCGTTCGCCGCTCCGGG
TTGGCTCCCGTAGGAAAAAATTAGTCCGTAGCGAGAAATAAGCCCGCTCT
CGAAAAACTCGCCTGTAATATTTGCGCACAAGGGTTCAGCACTCTCTTGG
CTCGTCGACGACCAAGCTACCCTCCACTCTAGCCGAATGTGGTTTTCACT
CACCAAAAAAGTTCGTGCAGTAACACGCTTGCGCGTGCTGCGAGCACCCT
GTCAGGCTTGCCGCGACAGTATCACCTGCCTCTCGCTTGCCACGCCCCGT
TCCCACGGACACCAAATTGGCGTTCGGGAGAGGCGTGCCTGGTAAAACTA
TCCTGACATCAGCAAACTGCCACCGCGTAACAACCAATCGGCTAAGTCAA
GTTGACAGCCAGTTGGTGTCACCTCTCGGGAGTGAGTCCAACCTCACATC
CGCCGGAATGATCCTCCCCCCCCCCCCCCAACATATACCCGAAAACCAGG
TTTTGGGCATGGAGAGCACGAGTATAAATCGGCTGTCAAGATTCAAAATA
CGGCCGTTTCGATGTGGTTGATGACAGTCGGTTGTATCCAACTTGTGTAC
GAGTGCTGTTGTAGAAAATGGGCTTCCGTTCCTGCCCTGGTAAGATGTTG
AGTGAAAAACCTCGGGTCCGTGGAGAAAATACCCCCATAATTTTGACCAC
CTTTTGACAACCTTTGAGTTTTGCATTCTGGCTTTTAAAGCGCCCGATCA
TCTAGGTGCGAGTATGGCCGTGCTTTTTTCTCTCTCTTGTTTGAAGGCCT
TGTTCGTTTCTCTTAAAACAATAATTTTTCATTTTCCGCTGGCGGTTGAC
GGCAGGGAGGGGGTTAGCTCCAGCCAGCTCCAGCTCTACGGTGGGCTCTA
TTGCTTCCGCATTTTGTTGTTGTTATTTTCTGCTTTGTAGACAGACTGCT
GTGTGGATCACCGATGGGTAGACAGACTACTGCTGCATCACACGATGGAG
AGGGCTGTGGAGACGTCTTTGTGTGAAGACCCGTGCGTGGGCTGTATATA
TTATGACTGTTTAGACTGCTGCGTGCAGTAACACTCTTGGCTGTTGATAA
ACTGGTGAAGCGTACGTACTTGAAAAATACTGCTGAAATTTGTATGTGCT
ACTGGTAAAAGAGTACCGTATGTGCTGCTGTAAAGTCTCTAGGATACGGC
GAAGACTTGTTGTATACTGGTATATACTACTGGATGCACTAGCGACATCT
TGGGGGGGGGGGGGGGGAAAGGGAGGCTGATCCCCGCGCGCGTTCCGTGT
CGAAATAATCGTCTCTGGATGACTCTTAATCGTTGTGAAAGTAGGTAAGC
TCCGACATGGCCAAAAAAGAGCATGGCGTACCTTCCCAGTCCTTGTGTTG
CAATACTATTTAATAGAAAAATCACTATAATACTGGTACTTGGCGCTGAA
CGAATCTGAAATATTTCTGTCAGGCTAATGTCCCCCCGTGTAAAATTACT
GCCGCGCACCTAATCGAAAGAAGCTGCTGCCTTTTTTATGTGTCCTGAAT
TACAGGGGAATCGACGTGCCCTCGGTGACGCGCATCGTACAGATGGAAAT
GGCCACCAACGTGGTGAGTCGGCGTGAGACACGGGACGCGAACAGAGCAG
CGCCCACTTCCGACTGCCATGTTGGAGAGAGGAAATAAGACGGCGCTCGA
GCGAAACAATTTCCGATCCCCCCCCCCGCCCCCCCCCCTCCCCTCTTGAA
CCCCCTATTATTTATAGCATTATTACTGCTGTTTGCCAGTTGGTTATCGA
TTGAATTTGATAGTCCTATTGTGAGTATGATGACTGAGATGCTACTGCTG
CAGGTGTGACGCGCGTGTGGTTGCTTCCCCGCCCCGAAGAGTACGAAGAC
TTGTTCACTCCCCGCTTAACAAACGCCTCTTTTTGCGGCTGGCGTGGGTA
GTCAAAGCGTGAAGCCGCCGCTCGTTTTTTTTTTTCTCTGTAAGGTGCAT
CATCTGCATCGACTGGGGCGGGCGGCAAGGGCCGGGAGAACTGGGAGAGC
CACCAACTTTTTCGACAGCTCCACCAAGGCAAGCAAGGAATGCCTGACCG
GCCCCATGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10216:4105..11615-

>mRNA_P-canaliculata_contig10216.342.1 ID=mRNA_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig10216:4105..11615- (Pelvetia canaliculata dioecious)
ATGGTATTCGCCAACACCGCTGCCTCGTGTAAGATGGTATTCGCCAACAC
CGCTGCCTCGTGTAAGCTGGCGTGCGAGGCTCTCGCCGAGGAAGGGTTCT
CCTTCGTATCATACCACAAGGAAGTGGCTCCCAGGGATCGCCTGGAGAAT
CTGAAGGCTCTCAAGAGCGGGAGTGCCAAGATCCTCGTCTGCACCGACCT
CGCCTCAAGCTGGCGTGCGAGGCTCTCGCCGAGGAAGGGTTCTCCTTCGT
ATCATACCACAAGGAAGTGGCTCCCAGGGATCGCCTGGAGAATCTGAAGG
CTCTCAAGAGCGGGAGTGCCAAGATCCTCGTCTGCACCGACCTCGCCTCA
AGGGGAATCGACGTGCCCTCGGTGACGCGCATCGTACAGATGGAAATGGC
CACCAACGTGGGGAATCGACGTGCCCTCGGTGACGCGCATCGTACAGATG
GAAATGGCCACCAACGTGGTGCATCATCTGCATCGACTGGGGCGGGCGGC
AAGGGCCGGGAGAACTGGGAGAGCCACCAACTTTTTCGACAGCTCCACCA
AGGCAAGCAAGGAATGCCTGACCGGCCCCATGTAAGTGCATCATCTGCAT
CGACTGGGGCGGGCGGCAAGGGCCGGGAGAACTGGGAGAGCCACCAACTT
TTTCGACAGCTCCACCAAGGCAAGCAAGGAATGCCTGACCGGCCCCATGT
AA
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