mRNA_P-canaliculata_contig102.303.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102.303.1
Unique NamemRNA_P-canaliculata_contig102.303.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102.303.1 vs. uniprot
Match: UPI0004E9D82F (Pre-rRNA-processing protein ESF2 n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI0004E9D82F)

HSP 1 Score: 51.2 bits (121), Expect = 2.960e-5
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   58 MSARKRNEYLEGYESEDDNANGYDSEAVEDSRT--GHGSKRRRVEADSSDEETLHDGGGVVVVKESRHLGTTDKN 276
            MS RKRNE+LEG E+E++  NGYDSEA E      G G+KRR+V+A S D +     G V  VKE    G   K+
Sbjct:    1 MSTRKRNEFLEGDETEEEIENGYDSEAEEGRGALGGRGNKRRKVDATSDDSD-----GDVENVKEPPKAGAIVKD 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102.303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0004E9D82F2.960e-548.00Pre-rRNA-processing protein ESF2 n=1 Tax=Passalora... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102contigP-canaliculata_contig102:36335..36646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.7441492-CDS-P-canaliculata_contig102:36334..366461622815592.7441492-CDS-P-canaliculata_contig102:36334..36646Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102 36335..36646 +
1693494155.219181-CDS-P-canaliculata_contig102:36334..366461693494155.219181-CDS-P-canaliculata_contig102:36334..36646Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102 36335..36646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102.303.1prot_P-canaliculata_contig102.303.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102 36335..36646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102.303.1

>prot_P-canaliculata_contig102.303.1 ID=prot_P-canaliculata_contig102.303.1|Name=mRNA_P-canaliculata_contig102.303.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=104bp
AQTSDLGPVVQHFHHISNTMSARKRNEYLEGYESEDDNANGYDSEAVEDS
RTGHGSKRRRVEADSSDEETLHDGGGVVVVKESRHLGTTDKNPQESQPAE
QMGA
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mRNA from alignment at P-canaliculata_contig102:36335..36646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102.303.1 ID=mRNA_P-canaliculata_contig102.303.1|Name=mRNA_P-canaliculata_contig102.303.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at P-canaliculata_contig102:36335..36646+ (Pelvetia canaliculata dioecious)
GCTCAAACAAGTGACCTTGGGCCGGTCGTCCAACACTTCCATCACATATC
AAACACAATGTCAGCACGCAAACGCAACGAATATCTGGAAGGGTACGAAA
GCGAGGACGATAACGCAAACGGATACGACTCGGAAGCGGTCGAGGACAGT
CGAACGGGCCATGGCAGCAAACGAAGAAGAGTCGAGGCCGACAGCTCTGA
TGAAGAAACCCTCCACGACGGCGGGGGTGTGGTGGTGGTCAAGGAAAGCC
GGCACCTTGGAACGACCGACAAGAACCCGCAAGAGTCGCAACCGGCCGAG
CAGATGGGCGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig102:36335..36646+

>mRNA_P-canaliculata_contig102.303.1 ID=mRNA_P-canaliculata_contig102.303.1|Name=mRNA_P-canaliculata_contig102.303.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at P-canaliculata_contig102:36335..36646+ (Pelvetia canaliculata dioecious)
GCTCAAACAAGTGACCTTGGGCCGGTCGTCCAACACTTCCATCACATATC
AAACACAATGTCAGCACGCAAACGCAACGAATATCTGGAAGGGTACGAAA
GCGAGGACGATAACGCAAACGGATACGACTCGGAAGCGGTCGAGGACAGT
CGAACGGGCCATGGCAGCAAACGAAGAAGAGTCGAGGCCGACAGCTCTGA
TGAAGAAACCCTCCACGACGGCGGGGGTGTGGTGGTGGTCAAGGAAAGCC
GGCACCTTGGAACGACCGACAAGAACCCGCAAGAGTCGCAACCGGCCGAG
CAGATGGGCGCCGCTCAAACAAGTGACCTTGGGCCGGTCGTCCAACACTT
CCATCACATATCAAACACAATGTCAGCACGCAAACGCAACGAATATCTGG
AAGGGTACGAAAGCGAGGACGATAACGCAAACGGATACGACTCGGAAGCG
GTCGAGGACAGTCGAACGGGCCATGGCAGCAAACGAAGAAGAGTCGAGGC
CGACAGCTCTGATGAAGAAACCCTCCACGACGGCGGGGGTGTGGTGGTGG
TCAAGGAAAGCCGGCACCTTGGAACGACCGACAAGAACCCGCAAGAGTCG
CAACCGGCCGAGCAGATGGGCGCC
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