mRNA_P-canaliculata_contig101939.284.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101939.284.1
Unique NamemRNA_P-canaliculata_contig101939.284.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101939.284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101939contigP-canaliculata_contig101939:362..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size590
Cds size486
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.5687826-UTR-P-canaliculata_contig101939:361..4651622815591.5687826-UTR-P-canaliculata_contig101939:361..465Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101939 362..465 +
1693494154.5787048-UTR-P-canaliculata_contig101939:361..4651693494154.5787048-UTR-P-canaliculata_contig101939:361..465Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101939 362..465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.580057-CDS-P-canaliculata_contig101939:465..9511622815591.580057-CDS-P-canaliculata_contig101939:465..951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101939 466..951 +
1693494154.5968735-CDS-P-canaliculata_contig101939:465..9511693494154.5968735-CDS-P-canaliculata_contig101939:465..951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101939 466..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101939.284.1prot_P-canaliculata_contig101939.284.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101939 466..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101939.284.1

>prot_P-canaliculata_contig101939.284.1 ID=prot_P-canaliculata_contig101939.284.1|Name=mRNA_P-canaliculata_contig101939.284.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=162bp
MQMERHVFTLSSRVSDPKNHVSNILTTVLSASSDIKKDFISKATQSKSNV
VQQYTLRWRKIEMVNAPLLIQRFVHLARLDCSYRLSYLVRQICGHDGRIY
NNRRQAKKHKGKKQRANRQKYIRQTFLSVRKVTSSFFADPYQIAYSARST
TRSSLAAGASS*
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mRNA from alignment at P-canaliculata_contig101939:362..951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101939.284.1 ID=mRNA_P-canaliculata_contig101939.284.1|Name=mRNA_P-canaliculata_contig101939.284.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at P-canaliculata_contig101939:362..951+ (Pelvetia canaliculata dioecious)
CTTGGCACTCTGATGACCTCGTACAGGTCGTATCTAATTCGTGCATAACG
TATTCTTATCTGACGACTCAATTTCGACATTCTACATCCTCCGTACCGTA
GAAAATGCAGATGGAAAGACATGTTTTTACCTTATCGTCAAGAGTTTCTG
ATCCGAAAAATCATGTCTCAAATATATTGACTACAGTACTATCTGCCAGT
TCAGACATCAAGAAAGACTTCATTTCAAAGGCAACGCAATCAAAGAGCAA
CGTTGTACAACAGTATACCCTTCGTTGGCGAAAAATCGAGATGGTGAATG
CTCCTCTCCTGATACAGCGGTTCGTGCATCTGGCACGCCTCGATTGCTCC
TATCGCCTTTCGTACCTGGTTCGGCAAATTTGCGGACATGACGGAAGAAT
ATACAACAATCGAAGACAGGCAAAAAAACACAAGGGAAAAAAACAACGCG
CAAACAGACAGAAGTACATACGACAAACATTTCTCTCTGTCAGAAAAGTA
ACGAGTTCATTCTTTGCCGACCCCTATCAAATTGCCTATTCTGCTCGTTC
GACCACGCGGTCATCCCTCGCTGCTGGCGCTTCTTCGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101939:362..951+

>mRNA_P-canaliculata_contig101939.284.1 ID=mRNA_P-canaliculata_contig101939.284.1|Name=mRNA_P-canaliculata_contig101939.284.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at P-canaliculata_contig101939:362..951+ (Pelvetia canaliculata dioecious)
ATGCAGATGGAAAGACATGTTTTTACCTTATCGTCAAGAGTTTCTGATCC
GAAAAATCATGTCTCAAATATATTGACTACAGTACTATCTGCCAGTTCAG
ACATCAAGAAAGACTTCATTTCAAAGGCAACGCAATCAAAGAGCAACGTT
GTACAACAGTATACCCTTCGTTGGCGAAAAATCGAGATGGTGAATGCTCC
TCTCCTGATACAGCGGTTCGTGCATCTGGCACGCCTCGATTGCTCCTATC
GCCTTTCGTACCTGGTTCGGCAAATTTGCGGACATGACGGAAGAATATAC
AACAATCGAAGACAGGCAAAAAAACACAAGGGAAAAAAACAACGCGCAAA
CAGACAGAAGTACATACGACAAACATTTCTCTCTGTCAGAAAAGTAACGA
GTTCATTCTTTGCCGACCCCTATCAAATTGCCTATTCTGCTCGTTCGACC
ACGCGGTCATCCCTCGCTGCTGGCGCTTCTTCGTAGATGCAGATGGAAAG
ACATGTTTTTACCTTATCGTCAAGAGTTTCTGATCCGAAAAATCATGTCT
CAAATATATTGACTACAGTACTATCTGCCAGTTCAGACATCAAGAAAGAC
TTCATTTCAAAGGCAACGCAATCAAAGAGCAACGTTGTACAACAGTATAC
CCTTCGTTGGCGAAAAATCGAGATGGTGAATGCTCCTCTCCTGATACAGC
GGTTCGTGCATCTGGCACGCCTCGATTGCTCCTATCGCCTTTCGTACCTG
GTTCGGCAAATTTGCGGACATGACGGAAGAATATACAACAATCGAAGACA
GGCAAAAAAACACAAGGGAAAAAAACAACGCGCAAACAGACAGAAGTACA
TACGACAAACATTTCTCTCTGTCAGAAAAGTAACGAGTTCATTCTTTGCC
GACCCCTATCAAATTGCCTATTCTGCTCGTTCGACCACGCGGTCATCCCT
CGCTGCTGGCGCTTCTTCGTAG
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