mRNA_P-canaliculata_contig10190.280.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10190.280.1
Unique NamemRNA_P-canaliculata_contig10190.280.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10190.280.1 vs. uniprot
Match: A0A1V8TK25_9PEZI (RNA-directed DNA polymerase n=1 Tax=Rachicladosporium antarcticum TaxID=1507870 RepID=A0A1V8TK25_9PEZI)

HSP 1 Score: 116 bits (291), Expect = 3.390e-23
Identity = 82/259 (31.66%), Postives = 136/259 (52.51%), Query Frame = 3 
Query:  447 PAGAFNVHQVPSFAGSAKEDAKRWLDKLTFEERTHGVS-PGQMVWSFNVLLVEKVAEWADTNHLLQTILFKPIHEVTAENWTTVKNGFLLRWKKPARERMNPVQEVNSLRQGMEESLESYYSRANNLL----GWMNIPDSVQAGATLLQFVTQAFVKGLQDEDIQIRLMRVMPQEE---RTLMETFEAVSRVFQLRDMEDALEREHDQDRELEILRRFYDAYTGRSGEDPSEVSAEALSIRSRTSGACVSMEGPSRHPQ 1199
            PA      Q+  F G+  +DAKRW  +L    +  GV+ P   +  FN  L +K AEWA+ +HL++ +L +   EV   +  TVK+ F+  W K  R   N + E+ +L+Q  +E+L  YY+RA NLL    G  N   + QA  ++L   T A+ +G+ DE++++R+MR+   ++   RTL  T+E    + +L   E A+  E  +++ELE+L+ +           PS    E +++ +    A   + GPS+H Q
Sbjct:   66 PAPQVTASQMEVFIGAPHQDAKRWWARLVANLQRDGVTEPRAKLDQFNSFLGDKPAEWAEDDHLVKRLLDEENDEVREADVKTVKDAFIADWGKKPRAAPNAIPEIQTLKQKSDETLRQYYNRAMNLLRSAGGDDNTATASQASKSILSLATTAYKRGIFDEELRLRVMRMAEPDDGNVRTLQNTYEKAESMERLIRDEHAMIGESRKEKELEVLKAY--VMDRSMNRQPSAAIMEQVALITGVPFARQEVAGPSQHHQ 322
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10190.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1V8TK25_9PEZI3.390e-2331.66RNA-directed DNA polymerase n=1 Tax=Rachicladospor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10190contigP-canaliculata_contig10190:9936..11805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score83.2
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog1047171.Mycgr3P97873
EggNOG OGs20740@147541,2943U@1,2RB0R@2759,38MGB@33154,3MNY1@451867,3PPCI@4751,3R8NC@4890
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1870
Cds size1419
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10190.280.1prot_P-canaliculata_contig10190.280.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10190 10367..11785 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.321298-UTR-P-canaliculata_contig10190:9935..103661622815591.321298-UTR-P-canaliculata_contig10190:9935..10366Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 9936..10366 +
1693494154.4684427-UTR-P-canaliculata_contig10190:9935..103661693494154.4684427-UTR-P-canaliculata_contig10190:9935..10366Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 9936..10366 +
1622815591.348475-UTR-P-canaliculata_contig10190:11785..118051622815591.348475-UTR-P-canaliculata_contig10190:11785..11805Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 11786..11805 +
1693494154.4877353-UTR-P-canaliculata_contig10190:11785..118051693494154.4877353-UTR-P-canaliculata_contig10190:11785..11805Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 11786..11805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.333841-CDS-P-canaliculata_contig10190:10366..117851622815591.333841-CDS-P-canaliculata_contig10190:10366..11785Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10190 10367..11785 +
1693494154.4796522-CDS-P-canaliculata_contig10190:10366..117851693494154.4796522-CDS-P-canaliculata_contig10190:10366..11785Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10190 10367..11785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10190.280.1

>prot_P-canaliculata_contig10190.280.1 ID=prot_P-canaliculata_contig10190.280.1|Name=mRNA_P-canaliculata_contig10190.280.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=473bp
MAQPPPAGAFNVHQVPSFAGSAKEDAKRWLDKLTFEERTHGVSPGQMVWS
FNVLLVEKVAEWADTNHLLQTILFKPIHEVTAENWTTVKNGFLLRWKKPA
RERMNPVQEVNSLRQGMEESLESYYSRANNLLGWMNIPDSVQAGATLLQF
VTQAFVKGLQDEDIQIRLMRVMPQEERTLMETFEAVSRVFQLRDMEDALE
REHDQDRELEILRRFYDAYTGRSGEDPSEVSAEALSIRSRTSGACVSMEG
PSRHPQQQHAWYQAPPPQQMPPAWYYYRGPLSSQPGPSSSSQQAPPPMPL
SPTEIAPAPASPVEETPAEDNEEPEPMEVQAAEPPARDPPPPVGPEEPTT
ENEADALPAPKVAPTTESVGECWSPPGVLQVAGSVQTESDGATKIAVIRV
SPPPPPEPPPWLVTGRLFVRFFPLSLCVNREVDVWGEGVARGLGKEVRLI
GRHTRKGGYGQPMGIWRVPPRR*
back to top

mRNA from alignment at P-canaliculata_contig10190:9936..11805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10190.280.1 ID=mRNA_P-canaliculata_contig10190.280.1|Name=mRNA_P-canaliculata_contig10190.280.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1870bp|location=Sequence derived from alignment at P-canaliculata_contig10190:9936..11805+ (Pelvetia canaliculata dioecious)
TTCCCTCTTTCGCTGGTGACCGTGCCAGGGGGTCCCTTCGATCCAGCACC
GTCTGGCGAGGGTGACCTAGGAGAAAAACCCCGTTCTTGTTTGAATTGTT
CTTGCACAGGCACCTGGAATTGTTCGCCGCATCGCACGGCATTGTTCGCC
GTACCGCACGGCACCTGGCTCTCGTTCGCCGCATCGCACGGCACTGTTCG
CCGTATCGCACGGCACCTGTTCCCGTTCGCCGCTTCGCACGGCACCTGTC
CTCGTTCGCCGCATCACCGGCACCTGTTCCCGTTCGCCGCACCGCACGGC
ACCTGTTCCCGTTCGCCGCTTCGCACGGCACCTGTCCTCATTCGCCGCAT
CACCGGCACCTGTTCCCGTTTGCCGCACCGCACGGCACCTGTTCTCGTTC
ATCGCATCTCTCGACAGTCCCTACAGTCACCATGGCCCAGCCGCCACCGG
CAGGGGCATTCAATGTGCACCAAGTCCCTTCATTCGCAGGAAGTGCAAAG
GAAGACGCCAAGCGATGGCTGGACAAGCTGACCTTTGAAGAGAGGACACA
TGGGGTTTCTCCTGGGCAAATGGTATGGTCCTTCAACGTACTACTGGTCG
AGAAGGTGGCGGAGTGGGCGGACACAAACCACCTACTGCAAACGATTCTC
TTCAAGCCCATACATGAGGTCACCGCTGAGAACTGGACAACAGTGAAGAA
TGGGTTCTTGTTGCGGTGGAAGAAGCCAGCGAGGGAGAGAATGAACCCGG
TCCAGGAGGTCAACAGCCTCCGACAAGGAATGGAAGAGAGCCTTGAGTCC
TACTACTCTCGCGCCAACAACCTCCTGGGGTGGATGAACATACCGGACTC
AGTTCAGGCCGGAGCAACGTTGCTGCAATTCGTCACTCAAGCATTTGTCA
AGGGCCTGCAGGACGAAGACATCCAGATCCGGTTGATGAGGGTGATGCCA
CAAGAGGAGAGGACGTTGATGGAAACGTTCGAAGCTGTCAGCAGGGTGTT
TCAGCTCCGGGATATGGAAGATGCGTTGGAAAGGGAGCACGACCAGGATA
GAGAGTTGGAGATTCTGCGACGTTTCTATGACGCATACACGGGCCGCAGC
GGGGAAGATCCATCAGAGGTGTCGGCAGAGGCGCTGTCCATCCGGAGCCG
CACGAGTGGTGCATGTGTGAGCATGGAGGGTCCGAGCCGTCATCCCCAGC
AGCAGCACGCGTGGTATCAAGCTCCACCGCCACAGCAAATGCCCCCGGCC
TGGTATTACTATCGAGGTCCGTTGTCGTCGCAACCGGGACCGTCGTCATC
GTCGCAACAGGCTCCCCCGCCAATGCCGCTATCACCAACTGAGATTGCTC
CAGCACCAGCATCGCCAGTGGAGGAGACTCCAGCGGAGGACAACGAAGAG
CCAGAGCCAATGGAGGTCCAAGCAGCAGAACCGCCGGCGCGAGATCCGCC
ACCACCAGTCGGGCCAGAGGAGCCGACAACGGAGAACGAGGCGGATGCAC
TGCCTGCACCAAAGGTTGCCCCCACGACCGAGAGTGTCGGAGAGTGCTGG
TCGCCACCGGGAGTGTTACAAGTCGCCGGGAGTGTCCAGACCGAGAGTGA
CGGAGCCACAAAAATTGCTGTCATCAGAGTGTCGCCGCCACCACCACCGG
AACCACCGCCGTGGCTAGTGACCGGAAGGCTCTTTGTTCGTTTCTTTCCT
TTGTCTCTCTGTGTCAACCGGGAGGTTGACGTCTGGGGTGAGGGAGTAGC
GAGAGGATTGGGAAAGGAAGTGCGCCTAATTGGTCGGCACACCCGAAAAG
GGGGATACGGGCAGCCGATGGGTATATGGAGGGTCCCCCCTCGCAGGTAG
CTCTGAAGACACATCCCTCC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10190:9936..11805+

>mRNA_P-canaliculata_contig10190.280.1 ID=mRNA_P-canaliculata_contig10190.280.1|Name=mRNA_P-canaliculata_contig10190.280.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2838bp|location=Sequence derived from alignment at P-canaliculata_contig10190:9936..11805+ (Pelvetia canaliculata dioecious)
ATGGCCCAGCCGCCACCGGCAGGGGCATTCAATGTGCACCAAGTCCCTTC
ATTCGCAGGAAGTGCAAAGGAAGACGCCAAGCGATGGCTGGACAAGCTGA
CCTTTGAAGAGAGGACACATGGGGTTTCTCCTGGGCAAATGGTATGGTCC
TTCAACGTACTACTGGTCGAGAAGGTGGCGGAGTGGGCGGACACAAACCA
CCTACTGCAAACGATTCTCTTCAAGCCCATACATGAGGTCACCGCTGAGA
ACTGGACAACAGTGAAGAATGGGTTCTTGTTGCGGTGGAAGAAGCCAGCG
AGGGAGAGAATGAACCCGGTCCAGGAGGTCAACAGCCTCCGACAAGGAAT
GGAAGAGAGCCTTGAGTCCTACTACTCTCGCGCCAACAACCTCCTGGGGT
GGATGAACATACCGGACTCAGTTCAGGCCGGAGCAACGTTGCTGCAATTC
GTCACTCAAGCATTTGTCAAGGGCCTGCAGGACGAAGACATCCAGATCCG
GTTGATGAGGGTGATGCCACAAGAGGAGAGGACGTTGATGGAAACGTTCG
AAGCTGTCAGCAGGGTGTTTCAGCTCCGGGATATGGAAGATGCGTTGGAA
AGGGAGCACGACCAGGATAGAGAGTTGGAGATTCTGCGACGTTTCTATGA
CGCATACACGGGCCGCAGCGGGGAAGATCCATCAGAGGTGTCGGCAGAGG
CGCTGTCCATCCGGAGCCGCACGAGTGGTGCATGTGTGAGCATGGAGGGT
CCGAGCCGTCATCCCCAGCAGCAGCACGCGTGGTATCAAGCTCCACCGCC
ACAGCAAATGCCCCCGGCCTGGTATTACTATCGAGGTCCGTTGTCGTCGC
AACCGGGACCGTCGTCATCGTCGCAACAGGCTCCCCCGCCAATGCCGCTA
TCACCAACTGAGATTGCTCCAGCACCAGCATCGCCAGTGGAGGAGACTCC
AGCGGAGGACAACGAAGAGCCAGAGCCAATGGAGGTCCAAGCAGCAGAAC
CGCCGGCGCGAGATCCGCCACCACCAGTCGGGCCAGAGGAGCCGACAACG
GAGAACGAGGCGGATGCACTGCCTGCACCAAAGGTTGCCCCCACGACCGA
GAGTGTCGGAGAGTGCTGGTCGCCACCGGGAGTGTTACAAGTCGCCGGGA
GTGTCCAGACCGAGAGTGACGGAGCCACAAAAATTGCTGTCATCAGAGTG
TCGCCGCCACCACCACCGGAACCACCGCCGTGGCTAGTGACCGGAAGGCT
CTTTGTTCGTTTCTTTCCTTTGTCTCTCTGTGTCAACCGGGAGGTTGACG
TCTGGGGTGAGGGAGTAGCGAGAGGATTGGGAAAGGAAGTGCGCCTAATT
GGTCGGCACACCCGAAAAGGGGGATACGGGCAGCCGATGGGTATATGGAG
GGTCCCCCCTCGCAGGTAGATGGCCCAGCCGCCACCGGCAGGGGCATTCA
ATGTGCACCAAGTCCCTTCATTCGCAGGAAGTGCAAAGGAAGACGCCAAG
CGATGGCTGGACAAGCTGACCTTTGAAGAGAGGACACATGGGGTTTCTCC
TGGGCAAATGGTATGGTCCTTCAACGTACTACTGGTCGAGAAGGTGGCGG
AGTGGGCGGACACAAACCACCTACTGCAAACGATTCTCTTCAAGCCCATA
CATGAGGTCACCGCTGAGAACTGGACAACAGTGAAGAATGGGTTCTTGTT
GCGGTGGAAGAAGCCAGCGAGGGAGAGAATGAACCCGGTCCAGGAGGTCA
ACAGCCTCCGACAAGGAATGGAAGAGAGCCTTGAGTCCTACTACTCTCGC
GCCAACAACCTCCTGGGGTGGATGAACATACCGGACTCAGTTCAGGCCGG
AGCAACGTTGCTGCAATTCGTCACTCAAGCATTTGTCAAGGGCCTGCAGG
ACGAAGACATCCAGATCCGGTTGATGAGGGTGATGCCACAAGAGGAGAGG
ACGTTGATGGAAACGTTCGAAGCTGTCAGCAGGGTGTTTCAGCTCCGGGA
TATGGAAGATGCGTTGGAAAGGGAGCACGACCAGGATAGAGAGTTGGAGA
TTCTGCGACGTTTCTATGACGCATACACGGGCCGCAGCGGGGAAGATCCA
TCAGAGGTGTCGGCAGAGGCGCTGTCCATCCGGAGCCGCACGAGTGGTGC
ATGTGTGAGCATGGAGGGTCCGAGCCGTCATCCCCAGCAGCAGCACGCGT
GGTATCAAGCTCCACCGCCACAGCAAATGCCCCCGGCCTGGTATTACTAT
CGAGGTCCGTTGTCGTCGCAACCGGGACCGTCGTCATCGTCGCAACAGGC
TCCCCCGCCAATGCCGCTATCACCAACTGAGATTGCTCCAGCACCAGCAT
CGCCAGTGGAGGAGACTCCAGCGGAGGACAACGAAGAGCCAGAGCCAATG
GAGGTCCAAGCAGCAGAACCGCCGGCGCGAGATCCGCCACCACCAGTCGG
GCCAGAGGAGCCGACAACGGAGAACGAGGCGGATGCACTGCCTGCACCAA
AGGTTGCCCCCACGACCGAGAGTGTCGGAGAGTGCTGGTCGCCACCGGGA
GTGTTACAAGTCGCCGGGAGTGTCCAGACCGAGAGTGACGGAGCCACAAA
AATTGCTGTCATCAGAGTGTCGCCGCCACCACCACCGGAACCACCGCCGT
GGCTAGTGACCGGAAGGCTCTTTGTTCGTTTCTTTCCTTTGTCTCTCTGT
GTCAACCGGGAGGTTGACGTCTGGGGTGAGGGAGTAGCGAGAGGATTGGG
AAAGGAAGTGCGCCTAATTGGTCGGCACACCCGAAAAGGGGGATACGGGC
AGCCGATGGGTATATGGAGGGTCCCCCCTCGCAGGTAG
back to top