mRNA_P-canaliculata_contig10180.268.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10180.268.1
Unique NamemRNA_P-canaliculata_contig10180.268.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: A0A835YV88_9STRA (Flavoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV88_9STRA)

HSP 1 Score: 214 bits (546), Expect = 2.310e-63
Identity = 100/156 (64.10%), Postives = 122/156 (78.21%), Query Frame = 1 
Query:    4 VKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILKELGVVVIPPASKLLACGDRGIGALAAVDDI 471
            VK++VT+AS+ F+D +R Y+  +Y A++AL+PP+ VL D  EWG W  VGDPV H+QLR+WAD++L+APLSANTLGKLANGLCDNLLTC+ARAWD    KP +VAPAMNTHMW HP+T RH++ L  LGV  I P  K LACGD G GALA V DI
Sbjct:   42 VKIIVTKASRAFLDCARDYDRPSYDAWSALEPPMEVLADEGEWGMWSKVGDPVQHVQLREWADLLLIAPLSANTLGKLANGLCDNLLTCVARAWDVT--KPLIVAPAMNTHMWSHPLTARHLASLGVLGVTTISPVVKTLACGDTGTGALADVADI 195
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: A0A4D9D302_9STRA (Flavoprotein domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D302_9STRA)

HSP 1 Score: 211 bits (536), Expect = 9.670e-62
Identity = 96/164 (58.54%), Postives = 131/164 (79.88%), Query Frame = 1 
Query:    1 QVKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILK-ELGVVVIPPASKLLACGDRGIGALAAVDDICNVAKD 489
            +VKV +T+A++HF + +++YNP A+A++  L   + VL+D  EW AW+A+GDPVLHIQLRDWAD++L+APLSANTLGKLA+GLCDNL+T I RAWD + +KP ++APAMNTHMW+HP T + + +L+ +L   VIPP SKLLACGDRG G LAA++D+    +D
Sbjct:   41 EVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWNAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDVK-RKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIEDLVRAVQD 203
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: A0A067CM62_SAPPC (Flavoprotein domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CM62_SAPPC)

HSP 1 Score: 199 bits (506), Expect = 1.120e-57
Identity = 92/158 (58.23%), Postives = 122/158 (77.22%), Query Frame = 1 
Query:    1 QVKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILKE-LGVVVIPPASKLLACGDRGIGALAAVDDI 471
            +V+VV+T+++  F+ ++  YNP  +AA+ AL+  + +  D  EW AW+ +GDP+LHIQLRDWADV +VAPLSAN++ KLANGLCDNLLTC+ARAW     KP +VAPAMNT MW HP T +H++IL++  G  VIPP SK+LACG+ G GALAA+DDI
Sbjct:   34 EVQVVLTKSANFFLPKAAAYNPTMFAAFEALN--VTIHRDEDEWNAWNVIGDPILHIQLRDWADVCVVAPLSANSMAKLANGLCDNLLTCVARAWS--QSKPLLVAPAMNTQMWAHPCTGKHVTILQDDFGYRVIPPVSKMLACGETGNGALAAIDDI 187
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: W4GS25_9STRA (Flavoprotein domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GS25_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.230e-53
Identity = 90/156 (57.69%), Postives = 118/156 (75.64%), Query Frame = 1 
Query:    4 VKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILKELGVVVIPPASKLLACGDRGIGALAAVDDI 471
            V+VVVT+A++ F+D++  Y+P+A+AA+ AL  PI  L D  EW AW ++GDPVLHI LRDWADV+ +APLSANT+ KLA GLCDNL+TC+ARAW     KP +VAPAMNT M+ HP T+ H+ +L+  G  ++ P SK LACG+ G GALA+VD I
Sbjct:  164 VRVVVTKAAQFFLDKAATYDPEAHAAFIALSLPI--LRDDDEWNAWSSLGDPVLHIHLRDWADVMCIAPLSANTMAKLAGGLCDNLVTCVARAWS--TAKPLIVAPAMNTQMYAHPATESHLHLLRSFGYSIVSPVSKTLACGEVGNGALASVDTI 315
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: A0A024TQ70_9STRA (Flavoprotein domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQ70_9STRA)

HSP 1 Score: 192 bits (489), Expect = 3.240e-53
Identity = 92/156 (58.97%), Postives = 118/156 (75.64%), Query Frame = 1 
Query:    4 VKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILKELGVVVIPPASKLLACGDRGIGALAAVDDI 471
            V+++VT+A+  F+D +  Y+P A+AA+ AL  PI  L D  EW AW ++GDPVLHIQLRDWADV+ +APLSANT+ KLA+GLCDNLLTC+ARAW     KP +VAPAMNT M+QH +T   +++L+  G  V+PP SK LACG+ G GALAAVD I
Sbjct:  163 VRILVTKAATFFLDMAAAYDPVAHAAFDALALPI--LHDDDEWSAWSSLGDPVLHIQLRDWADVLCIAPLSANTMAKLAHGLCDNLLTCVARAWS--PTKPVIVAPAMNTQMYQHRVTSSQLALLRSFGYTVVPPVSKTLACGEVGNGALAAVDTI 314
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: A0A1V9ZY52_9STRA (Phosphopantothenoylcysteine decarboxylase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY52_9STRA)

HSP 1 Score: 187 bits (474), Expect = 8.220e-53
Identity = 87/163 (53.37%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:    4 VKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILK-ELGVVVIPPASKLLACGDRGIGALAAVDDICNVAKD 489
            V++V+T+++  F++++  YNP+ YAA+  L   I  LDD  EW  W+A+GD +LHIQLR+WA+V +VAPLSANT+ KL NG+CDNLLTC+ARAW   + KP ++APAMNT MW HP T + + IL+ + G  +IPP SK+LACG+ G GALAAV  IC + ++
Sbjct:   40 VQIVLTKSANFFLEKAEKYNPEVYAAFQTLGVKI-YLDD-NEWDTWNAIGDDILHIQLREWAEVFVVAPLSANTMAKLTNGICDNLLTCVARAW--ASSKPLLIAPAMNTQMWNHPCTKKQLQILENDYGYEIIPPMSKMLACGETGNGALAAVKTICTLVQN 198
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: A0A0G4I9D1_9ALVE (Flavoprotein domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9D1_9ALVE)

HSP 1 Score: 186 bits (471), Expect = 1.510e-52
Identity = 92/157 (58.60%), Postives = 106/157 (67.52%), Query Frame = 1 
Query:    1 QVKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILKELGVVVIPPASKLLACGDRGIGALAAVDDI 471
            +++VV T  SKHF D             TAL   +    D  EWG W   GDPV+HI LR WADV +VAPLSANTL KLANGL DNLLTC+ARAWD Q  KPF+V PAMNT MW+H  T RHI+ + ELG VV+PP SK LACGD G+GAL  VDD+
Sbjct:   38 EIRVVFTSKSKHFCDP------------TALPSNVQSFTDEDEWGHWKQKGDPVVHIDLRRWADVFVVAPLSANTLAKLANGLSDNLLTCVARAWDVQ--KPFIVFPAMNTLMWEHAFTSRHIATIVELGTVVVPPVSKELACGDTGVGALPPVDDV 180
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: K3WBB5_GLOUD (Flavoprotein domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBB5_GLOUD)

HSP 1 Score: 183 bits (465), Expect = 1.340e-51
Identity = 87/147 (59.18%), Postives = 107/147 (72.79%), Query Frame = 1 
Query:    1 QVKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILKELGVVVIPPASKLLACGDRG 441
            +VK+VVT+A   F+ +   YNP A+ A+TA   PI V+ D  EW AW  VGD VLHI+L+DWADV+L+AP+SANTL K+ANGL DNLLTCIARAW+   +K FV APAMNT MW HP+T RH+  L E G  +IPP  K+LACG  G
Sbjct:   39 EVKLVVTKAGDFFLQKVSEYNPSAWGAFTARAEPIEVIRDEHEWDAWRVVGDSVLHIELKDWADVLLLAPMSANTLAKIANGLSDNLLTCIARAWNV--RKSFVYAPAMNTDMWDHPVTARHLRTLGEFGYEMIPPVEKMLACGVVG 183
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BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: F0YJ52_AURAN (Flavoprotein domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ52_AURAN)

HSP 1 Score: 189 bits (480), Expect = 2.480e-51
Identity = 92/156 (58.97%), Postives = 116/156 (74.36%), Query Frame = 1 
Query:    4 VKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILKELGVVVIPPASKLLACGDRGIGALAAVDDI 471
            V+VVVTE +K F+ ++  Y+  A+A + A    I VL DA EW AW  +GD V+H++LR WAD++++APLSAN+L KLANGLCD+LL+C ARAWDF   KPFVVAPAMNT MW HP+T  H++ L+ LGV  +PPASK LACGD G GALA V  I
Sbjct:  237 VRVVVTEKAKTFLAKAEAYDAAAWATFQASG--IEVLSDADEWDAWQEIGDDVVHVELRKWADLLVIAPLSANSLAKLANGLCDDLLSCTARAWDFD--KPFVVAPAMNTAMWTHPLTATHLADLRVLGVAAVPPASKKLACGDVGPGALADVPAI 388
[Close]
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Match: A0A1V9YYZ2_9STRA (Phosphopantothenoylcysteine decarboxylase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYZ2_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.890e-51
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 1 
Query:    1 QVKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAVGDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNKKPFVVAPAMNTHMWQHPMTDRHISILK-ELGVVVIPPASKLLACGDRGI--------------GALAAVDDI 471
            +V++V+T+A+  F++++  YNP  +AAY AL+  I +  D  EW +W+A+GDP+LHIQLRDWADV +VAPLSAN++ KLANGL DNLLTC+ARAW   + KP +VAPAMNT MW HP TD+H+ +L+ E    +I P SK+LACG+ G               GALA VDDI
Sbjct:   38 EVQLVLTKAAAFFLEKAASYNPSMFAAYEALN--ITIHRDEDEWSSWNAIGDPILHIQLRDWADVFVVAPLSANSMAKLANGLSDNLLTCVARAWS--SAKPLLVAPAMNTQMWLHPCTDKHLRVLEGEYVYRIIRPVSKMLACGETGARTSCWLRITTFVGYGALAHVDDI 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10180.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YV88_9STRA2.310e-6364.10Flavoprotein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A4D9D302_9STRA9.670e-6258.54Flavoprotein domain-containing protein n=3 Tax=Mon... [more]
A0A067CM62_SAPPC1.120e-5758.23Flavoprotein domain-containing protein n=2 Tax=Sap... [more]
W4GS25_9STRA1.230e-5357.69Flavoprotein domain-containing protein n=11 Tax=Ap... [more]
A0A024TQ70_9STRA3.240e-5358.97Flavoprotein domain-containing protein n=2 Tax=Aph... [more]
A0A1V9ZY52_9STRA8.220e-5353.37Phosphopantothenoylcysteine decarboxylase n=1 Tax=... [more]
A0A0G4I9D1_9ALVE1.510e-5258.60Flavoprotein domain-containing protein n=1 Tax=Chr... [more]
K3WBB5_GLOUD1.340e-5159.18Flavoprotein domain-containing protein n=1 Tax=Glo... [more]
F0YJ52_AURAN2.480e-5158.97Flavoprotein domain-containing protein n=1 Tax=Aur... [more]
A0A1V9YYZ2_9STRA5.890e-5152.91Phosphopantothenoylcysteine decarboxylase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10180contigP-canaliculata_contig10180:5245..8378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue2.4e-47
Seed eggNOG ortholog112098.XP_008611307.1
Preferred namePPCDC
KEGG rclassRC00004,RC00039,RC00219,RC00332,RC00822,RC02725
KEGG koko:K00560,ko:K00652,ko:K01598
KEGG ReactionR02101,R03210,R03269,R10124
KEGG Pathwayko00240,ko00670,ko00770,ko00780,ko01100,ko01523,map00240,map00670,map00770,map00780,map01100,map01523
KEGG ModuleM00053,M00120,M00123,M00573,M00577
GOsGO:0000166,GO:0001558,GO:0003674,GO:0003824,GO:0004633,GO:0004799,GO:0004857,GO:0004864,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006220,GO:0006221,GO:0006231,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006950,GO:0006970,GO:0006972,GO:0007346,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009150,GO:0009152,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009259,GO:0009260,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009628,GO:0009651,GO:0009892,GO:0009966,GO:0009987,GO:0010181,GO:0010563,GO:0010605,GO:0010646,GO:0010921,GO:0010923,GO:0015936,GO:0015937,GO:0016043,GO:0016740,GO:0016741,GO:0016829,GO:0016830,GO:0016831,GO:0017076,GO:0018130,GO:0019208,GO:0019212,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0019725,GO:0019888,GO:0022607,GO:0023051,GO:0030003,GO:0030004,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032259,GO:0032268,GO:0032269,GO:0032515,GO:0032553,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0036094,GO:0040008,GO:0042083,GO:0042538,GO:0042592,GO:0042802,GO:0043086,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043666,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045936,GO:0046073,GO:0046385,GO:0046390,GO:0046483,GO:0048037,GO:0048519,GO:0048523,GO:0048583,GO:0048878,GO:0050662,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051186,GO:0051188,GO:0051246,GO:0051248,GO:0051259,GO:0051260,GO:0051336,GO:0051346,GO:0051726,GO:0055067,GO:0055080,GO:0055082,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070206,GO:0070207,GO:0071513,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0072527,GO:0072528,GO:0080090,GO:0090407,GO:0097159,GO:0097367,GO:0098771,GO:0098772,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990143
EggNOG free text desc.phosphopantothenoylcysteine decarboxylase activity
EggNOG OGsCOG0452@1,KOG0672@2759
EC2.1.1.45,2.3.1.47,4.1.1.36
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Exons5
Model size1541
Cds size516
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10180.268.1prot_P-canaliculata_contig10180.268.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10180 6270..8378 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.4488916-UTR-P-canaliculata_contig10180:5244..62691622815590.4488916-UTR-P-canaliculata_contig10180:5244..6269Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10180 5245..6269 -
1693494154.0451612-UTR-P-canaliculata_contig10180:5244..62691693494154.0451612-UTR-P-canaliculata_contig10180:5244..6269Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10180 5245..6269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.4655278-CDS-P-canaliculata_contig10180:6269..63461622815590.4655278-CDS-P-canaliculata_contig10180:6269..6346Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 6270..6346 -
1693494154.0658286-CDS-P-canaliculata_contig10180:6269..63461693494154.0658286-CDS-P-canaliculata_contig10180:6269..6346Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 6270..6346 -
1622815590.4816835-CDS-P-canaliculata_contig10180:6798..68751622815590.4816835-CDS-P-canaliculata_contig10180:6798..6875Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 6799..6875 -
1693494154.08245-CDS-P-canaliculata_contig10180:6798..68751693494154.08245-CDS-P-canaliculata_contig10180:6798..6875Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 6799..6875 -
1622815590.5036585-CDS-P-canaliculata_contig10180:7042..71401622815590.5036585-CDS-P-canaliculata_contig10180:7042..7140Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 7043..7140 -
1693494154.097553-CDS-P-canaliculata_contig10180:7042..71401693494154.097553-CDS-P-canaliculata_contig10180:7042..7140Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 7043..7140 -
1622815590.5147216-CDS-P-canaliculata_contig10180:7646..77361622815590.5147216-CDS-P-canaliculata_contig10180:7646..7736Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 7647..7736 -
1693494154.1128457-CDS-P-canaliculata_contig10180:7646..77361693494154.1128457-CDS-P-canaliculata_contig10180:7646..7736Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 7647..7736 -
1622815590.5252945-CDS-P-canaliculata_contig10180:8204..83781622815590.5252945-CDS-P-canaliculata_contig10180:8204..8378Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 8205..8378 -
1693494154.125854-CDS-P-canaliculata_contig10180:8204..83781693494154.125854-CDS-P-canaliculata_contig10180:8204..8378Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10180 8205..8378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10180.268.1

>prot_P-canaliculata_contig10180.268.1 ID=prot_P-canaliculata_contig10180.268.1|Name=mRNA_P-canaliculata_contig10180.268.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=172bp
QVKVVVTEASKHFIDRSRIYNPQAYAAYTALDPPIAVLDDAQEWGAWDAV
GDPVLHIQLRDWADVILVAPLSANTLGKLANGLCDNLLTCIARAWDFQNK
KPFVVAPAMNTHMWQHPMTDRHISILKELGVVVIPPASKLLACGDRGIGA
LAAVDDICNVAKDSCCFHPPR*
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mRNA from alignment at P-canaliculata_contig10180:5245..8378-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10180.268.1 ID=mRNA_P-canaliculata_contig10180.268.1|Name=mRNA_P-canaliculata_contig10180.268.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3134bp|location=Sequence derived from alignment at P-canaliculata_contig10180:5245..8378- (Pelvetia canaliculata dioecious)
CAGGTCAAGGTAGTAGTGACGGAGGCGAGCAAACACTTCATCGACAGGAG
CCGAATCTACAACCCTCAAGCCTACGCGGCGTACACGGCGCTTGACCCGC
CGATCGCTGTGCTTGACGACGCGCAAGAGTGGGGGGCTTGGGACGCGGTG
GGCGACCCTGTCCTGCACATACAGGTGAGGTGATGGTCGTGTCAGTCCAA
CCTCCTAAGGCACACCGTTTCGCTGCCAACTGTTACAAAAGTAGACTCTT
ATTCCCCCTCTGTCGGCTAGTGACTTTGCTGGCTTGACGAAAATATTACG
CCATGTGTTTCGCGTCACATTAGCTGCCGCTCTAGAGCTAGAGGGTTTGC
GTTGTCACTTGGGTCGGGTATAGGGAGATTTATGCAAGTTCAAACACAAC
ATAGTAGTTTCGACGAAGGCGGTTGTGCAATCGTCTCAGACCAACCACAT
CACCCCGGGCGTAGAAGGCGAAATTGTGTATGCTGTTGAGGGACAAGGAC
CCCTGTGGGCGTGATATCTTCTCAACTGTTATAACAAGTAATTTTGTGAT
CACGTACCTCACTTGACGTTCTTCTCACAAAACCTTTTTCCGGCGGGTAA
ACTCGGGGTTGTGCCGTGGACTGGGCGCGATCGAGCGCGCAGCTTCGGGA
CTGGGCAGATGTGATACTGGTGGCGCCGTTGTCGGCGAATACTCTCGGGA
AGCTCGCCAACGGCTTGTGCGACAACCTCCTGGTGATGATGGGTTCGTAT
ATTTTGCCGATAATCTGCATTGCCTTCAATACAGAACCTGGTACAACGCA
GACCCCCACTGGGAAGGAAAAACACCTGTCAACAGTTGTGTTAAAGGCAG
TAATCTCATCACGGACGAAGTGAAATTGACCTCTCCGTTCCCTGAGGTCT
GAGTCCACCACGTTGACCTCATTCGCTTGTGGGGTTTTCAAGGAAGCTTG
GCTTTCTTGAGCAGCAGCATTGCTGATCGGTGAGCTTGGTTTTCTCGGAT
TCATACGAATTTGGAGTGTCACCTGATCGAGGACATATTTCTGTTGCGTA
GCTCCCCCTTAAATGGTACTATGAAACTATATTGCCTGATGACAACCAAA
AATGTATAATTACAATTATCAACAAGCGCCTCTAGATGTTTTCTCAAATC
GGGCCTCCTCGCCAATCGCCCTCGATGCCCCCACCCCCCGTGTTGTTGTT
GTTGTTGTGATGGCTGTTTCTATTGCCGCCTCCGTCAGACTTGCATCGCC
CGGGCGTGGGATTTCCAAAACAAGAAGCCGTTTGTTGTCGCCCCCGCGAT
GAACACCCATATGTGGCAACACCCCATGACCGATCGGTGAGGAATCGCGC
GCGCATTTTTTTTTCCTCAAGAGCTTGTCCTAATTCCCGCTACAGTATTA
TTTCGGTTTCCCTACTTGGGTGCTCTCTAGCTGTGGCAAGATCACCTCTT
CCCCAGCGACCCGGTTTGGCTCACCGGTGTGAACCACTTTGCGCTGATAC
CAGGCATATTTCGATCTTGAAGGAGCTGGGCGTGGTGGTCATACCTCCGG
CATCTAAGCTGTTGGCCTGCGGTGACCGAGGTATGTGGTCTGCACGTGTA
CTACAACCGCGATCGAAACAAGACAGTCTGCTCCACGATCCATCCCGCCC
ACATATACCAGTTCTTCCCGCGTTCGGTGTCTGTTCCAATTCGGCTCTAC
TGGGTCGTATGCATCAGACCTTTGACAACACGTGCTGCTCTCGTCGACTG
CGCTTACAAACACCCCGCTCAATGTGGCCGTTAATGTCAACACGAAGATA
TGATACCGAGCAAGTTGTCGCGGGTCTTCGGGTCCGACGGAACGTCTTCT
CCTTTGGAAGGAACGATCTTAGAGGGGCACATCACACACTACTCTCCTTG
GAAGGAACGATCTTAGATAGACACGTGATACATTGCTCACTACTACTACT
TCTGTTGTGTACTGTATATTAGTCTTGCCCTTTCCAAATCCAATCCCCCG
GTTGACTTGTCTTACCTCGCATTTCTCGAAAGGGATTGGGGCGCTCGCGG
CCGTCGACGACATCTGCAACGTTGCAAAGGACTCCTGCTGTTTTCACCCC
CCGAGATAGCGGCGCGACGTTTCACGTCTTGCATCAGCAACGGCACACTT
ACTATTGATATCAATAGTGTAGATCCGATAGAATGGTGTGTTCTTATTTT
CCGTGTTTGTCTGGGCTCCTCGACATATGAAAATAAAAGTAATTTGTACA
AGGTACTGTACCTGCCAGCAGTCGCAGTATTATTAGTACTACAGCACAGG
TTTTCCGCGGTTCGGCTTTAGCATTATTAATACTGGTAGGTGATATTGAT
CGTTGATAAGGTCGAGCGATAGGGGGTGGATGGCATCAGCCTGTGTGTCC
CTCTTAGACGGGAAGGGCAGAGCCTTTGCAGCTACAGTAGTGCGCTCTTC
TCTATTTCCATCCGTTTACTTCCGCGGTTTCCGACCGTCAGAAGTTTTCT
TCAGTCGGGCCTCTCTCGTCATTCATGAGTTTTGAAAGTGGACGTGAAGG
CAAGGGGGAGGCAACATTTTGCGCGCAGTTTGAACGATAAAAGCCGCCGC
TGTCGTCGTCGTAAAGCGCAGAGCACGTTTCTGCCTGAGGGAGGGTCGAC
GGAGGATAAATCGAGGCCTTGCAGAGCTCCTGAGCTTCTAGACGAGTACT
GTAGATAGTTTTTATTGATATTATTTTTTCAGAAATCCGCTTGGAAAATT
GTCCCTGGCCCGCTGAAAACACCCCGGGGCGTGGACTCCTCCCGATGTCA
TATACCAGAGTATATATGTACGGTCACACATATAGCAAGAGTATGGATTA
ACCGGGTAAGGTTTCCAGTCCTGCTCGTGGTCAGTGTATTCGTGGAGTCC
TTTACCGTCGGGTTCCCCACTGGTGTAATGGAAAGTCTCTGTGTGGGGAT
GGGTCTTATACGGGAGAGATGGTGCTGTGCTTGGGGCTGGTTGATGATTG
CCGTGCTCACAGGAGATAATGGAACCTTGTTTTATTATTGTTTCTTCGTA
TGCCCACATCATGGGCATACACTCGTGACCTTATCAACTCATCATACCAG
CATACACACATACGTGCACACTAACTGGTAGGGT
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Coding sequence (CDS) from alignment at P-canaliculata_contig10180:5245..8378-

>mRNA_P-canaliculata_contig10180.268.1 ID=mRNA_P-canaliculata_contig10180.268.1|Name=mRNA_P-canaliculata_contig10180.268.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at P-canaliculata_contig10180:5245..8378- (Pelvetia canaliculata dioecious)
CAGGTCAAGGTAGTAGTGACGGAGGCGAGCAAACACTTCATCGACAGGAG
CCGAATCTACAACCCTCAAGCCTACGCGGCGTACACGGCGCTTGACCCGC
CGATCGCTGTGCTTGACGACGCGCAAGAGTGGGGGGCTTGGGACGCGGTG
GGCGACCCTGTCCTGCACATACAGCAGGTCAAGGTAGTAGTGACGGAGGC
GAGCAAACACTTCATCGACAGGAGCCGAATCTACAACCCTCAAGCCTACG
CGGCGTACACGGCGCTTGACCCGCCGATCGCTGTGCTTGACGACGCGCAA
GAGTGGGGGGCTTGGGACGCGGTGGGCGACCCTGTCCTGCACATACAGCT
TCGGGACTGGGCAGATGTGATACTGGTGGCGCCGTTGTCGGCGAATACTC
TCGGGAAGCTCGCCAACGGCTTGTGCGACAACCTCCTGCTTCGGGACTGG
GCAGATGTGATACTGGTGGCGCCGTTGTCGGCGAATACTCTCGGGAAGCT
CGCCAACGGCTTGTGCGACAACCTCCTGACTTGCATCGCCCGGGCGTGGG
ATTTCCAAAACAAGAAGCCGTTTGTTGTCGCCCCCGCGATGAACACCCAT
ATGTGGCAACACCCCATGACCGATCGACTTGCATCGCCCGGGCGTGGGAT
TTCCAAAACAAGAAGCCGTTTGTTGTCGCCCCCGCGATGAACACCCATAT
GTGGCAACACCCCATGACCGATCGGCATATTTCGATCTTGAAGGAGCTGG
GCGTGGTGGTCATACCTCCGGCATCTAAGCTGTTGGCCTGCGGTGACCGA
GGCATATTTCGATCTTGAAGGAGCTGGGCGTGGTGGTCATACCTCCGGCA
TCTAAGCTGTTGGCCTGCGGTGACCGAGGGATTGGGGCGCTCGCGGCCGT
CGACGACATCTGCAACGTTGCAAAGGACTCCTGCTGTTTTCACCCCCCGA
GATAGGGATTGGGGCGCTCGCGGCCGTCGACGACATCTGCAACGTTGCAA
AGGACTCCTGCTGTTTTCACCCCCCGAGATAG
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