mRNA_P-canaliculata_contig10179.266.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10179.266.1
Unique NamemRNA_P-canaliculata_contig10179.266.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10179.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10179contigP-canaliculata_contig10179:5682..6569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size888
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10179.266.1prot_P-canaliculata_contig10179.266.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10179 5934..6221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.3863533-UTR-P-canaliculata_contig10179:5681..59331622815590.3863533-UTR-P-canaliculata_contig10179:5681..5933Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10179 5682..5933 +
1693494154.0127273-UTR-P-canaliculata_contig10179:5681..59331693494154.0127273-UTR-P-canaliculata_contig10179:5681..5933Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10179 5682..5933 +
1622815590.4121182-UTR-P-canaliculata_contig10179:6221..65691622815590.4121182-UTR-P-canaliculata_contig10179:6221..6569Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10179 6222..6569 +
1693494154.032054-UTR-P-canaliculata_contig10179:6221..65691693494154.032054-UTR-P-canaliculata_contig10179:6221..6569Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10179 6222..6569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.3978677-CDS-P-canaliculata_contig10179:5933..62211622815590.3978677-CDS-P-canaliculata_contig10179:5933..6221Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10179 5934..6221 +
1693494154.0237324-CDS-P-canaliculata_contig10179:5933..62211693494154.0237324-CDS-P-canaliculata_contig10179:5933..6221Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10179 5934..6221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10179.266.1

>prot_P-canaliculata_contig10179.266.1 ID=prot_P-canaliculata_contig10179.266.1|Name=mRNA_P-canaliculata_contig10179.266.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp
MEGMVKDIFRCDEDGCSEQPNYGVAGSRMPSLCAEHVLEGMASLASKTCA
DDGCTKQQRRNSRHQEDGICHESFSGGCGPLSFQDMRQGWMLYAA*
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mRNA from alignment at P-canaliculata_contig10179:5682..6569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10179.266.1 ID=mRNA_P-canaliculata_contig10179.266.1|Name=mRNA_P-canaliculata_contig10179.266.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at P-canaliculata_contig10179:5682..6569+ (Pelvetia canaliculata dioecious)
CCGAAGTACGGGGCTGAGCTCGTTTTTGAGGGGATGGTTAGCATGACGAT
AAAGATGTGTGCCAACGATGGATGCTCTAAGCAATCGGGCTTCGGAATTG
TCAGTAGCAGTGAGGCGGAGTACTGCGCCGAGCACGCTCTTGAAGGTAGA
GTTGGCGGTGTTTCAACGGGTTACGCCCGAGATGGCTGCGCTAAGTAGCC
GAGCTACGGAGCAAGTGTTAGCAAGAAACCGGAGTCCTGCGCTGTGGGCT
CAATGGAGGGGATGGTGAAGGATATCTTCAGGTGTGACGAAGATGGATGC
TCAGAGCAGCCGAACTATGGGGTTGCTGGCAGCAGGATGCCAAGTCTTTG
CGCTGAACATGTTCTTGAGGGAATGGCAAGTCTTGCTTCCAAGACGTGTG
CAGATGATGGCTGCACTAAGCAGCAGCGACGGAATAGCCGGCATCAAGAA
GATGGTATTTGTCACGAATCGTTCTCTGGAGGCTGTGGCCCGCTCTCGTT
CCAAGATATGCGGCAAGGATGGATGCTCTACGCAGCCTAGTTACGGAATA
CCCGGTAGTGAGAAGCGGGAGTAATGCGTGAAGCATGCTTTGGAGGGAAT
GGTCAACGTTCCTTCCATGCATTGTTCCAGGGATGGATGCTTCACGCAGC
CGAGCTACGGAATGCCCGGTAGCAAGAGGCTGGAGTATTGCGTCAAGCAT
GCTCTGGAGGGAATGGTAAGTGTTTCTTCCAAACATTGTTCTAGCGGTGG
ATGCTTCACGCGGCCGAGCTACGGAATGCCCGGCAAGAAGCCGGAGTACT
ACGCCAAACATTCTTTGGGGGGTATGATCCGCGTTTCCTCCAAGAGCTGC
TCCGGCTATGGATGCAGTAAGCAGCCGACTTGCGGCTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig10179:5682..6569+

>mRNA_P-canaliculata_contig10179.266.1 ID=mRNA_P-canaliculata_contig10179.266.1|Name=mRNA_P-canaliculata_contig10179.266.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at P-canaliculata_contig10179:5682..6569+ (Pelvetia canaliculata dioecious)
ATGGAGGGGATGGTGAAGGATATCTTCAGGTGTGACGAAGATGGATGCTC
AGAGCAGCCGAACTATGGGGTTGCTGGCAGCAGGATGCCAAGTCTTTGCG
CTGAACATGTTCTTGAGGGAATGGCAAGTCTTGCTTCCAAGACGTGTGCA
GATGATGGCTGCACTAAGCAGCAGCGACGGAATAGCCGGCATCAAGAAGA
TGGTATTTGTCACGAATCGTTCTCTGGAGGCTGTGGCCCGCTCTCGTTCC
AAGATATGCGGCAAGGATGGATGCTCTACGCAGCCTAGATGGAGGGGATG
GTGAAGGATATCTTCAGGTGTGACGAAGATGGATGCTCAGAGCAGCCGAA
CTATGGGGTTGCTGGCAGCAGGATGCCAAGTCTTTGCGCTGAACATGTTC
TTGAGGGAATGGCAAGTCTTGCTTCCAAGACGTGTGCAGATGATGGCTGC
ACTAAGCAGCAGCGACGGAATAGCCGGCATCAAGAAGATGGTATTTGTCA
CGAATCGTTCTCTGGAGGCTGTGGCCCGCTCTCGTTCCAAGATATGCGGC
AAGGATGGATGCTCTACGCAGCCTAG
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