mRNA_P-canaliculata_contig101640.254.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101640.254.1
Unique NamemRNA_P-canaliculata_contig101640.254.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI00058D053C (hypothetical protein n=1 Tax=Psychroserpens damuponensis TaxID=943936 RepID=UPI00058D053C)

HSP 1 Score: 58.2 bits (139), Expect = 6.550e-8
Identity = 66/79 (83.54%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDAVKEGA 237
            MKKLILNI   +AL+VSV+SCR+TKEGA+NAAD+I NA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG+D+VKEGA
Sbjct:    1 MKKLILNIALALALVVSVTSCRETKEGAENAADAIENAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDSVKEGA 79
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI001F506EE0 (hypothetical protein n=1 Tax=Arcticiflavibacter luteus TaxID=1434066 RepID=UPI001F506EE0)

HSP 1 Score: 56.6 bits (135), Expect = 2.510e-7
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNAV 117
            MKKLILNI  V+AL+VSV+SCR+TKEGA+NAAD++ NA 
Sbjct:    1 MKKLILNIALVLALVVSVTSCRETKEGAENAADALENAA 39
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI000478D4D8 (hypothetical protein n=1 Tax=Sediminibacter sp. Hel_I_10 TaxID=1392490 RepID=UPI000478D4D8)

HSP 1 Score: 53.9 bits (128), Expect = 7.270e-7
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
            MKK ILN+   +AL+VSVSSCR+TKEGADNAAD++ N+
Sbjct:    1 MKKPILNLALAIALVVSVSSCRETKEGADNAADAVENS 38
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI001E48C850 (hypothetical protein n=1 Tax=Psychroserpens sp. XSD401 TaxID=2855840 RepID=UPI001E48C850)

HSP 1 Score: 54.3 bits (129), Expect = 1.360e-6
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
            MKKLILNI  V+AL+VSV+SCR+TKEGA++AAD + NA
Sbjct:    1 MKKLILNIALVLALVVSVTSCRETKEGAEDAADKVENA 38
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: A0A5C7B8S8_9FLAO (Uncharacterized protein n=2 Tax=Psychroserpens burtonensis TaxID=49278 RepID=A0A5C7B8S8_9FLAO)

HSP 1 Score: 52.8 bits (125), Expect = 2.020e-6
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
            MKKLILNI  V+AL+VSV+SCR+TKEGA++A D++ NA
Sbjct:    1 MKKLILNIALVLALVVSVASCRETKEGAEDAPDAVENA 38
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI0006455ED9 (hypothetical protein n=1 Tax=Psychroserpens sp. Hel_I_66 TaxID=1250004 RepID=UPI0006455ED9)

HSP 1 Score: 52.8 bits (125), Expect = 2.020e-6
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGN 111
            MKKLILNI   +AL+VSV+SCRDTK+GA+NA+D++ N
Sbjct:    1 MKKLILNIALALALVVSVTSCRDTKDGAENASDAVEN 37
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI0019531AD2 (hypothetical protein n=1 Tax=Flavihalobacter algicola TaxID=1719034 RepID=UPI0019531AD2)

HSP 1 Score: 52.4 bits (124), Expect = 2.900e-6
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNAV 117
            MKK+ILNI  V+AL+VSV+SCR+TKEGA+ A D++ NA 
Sbjct:    1 MKKIILNIALVLALVVSVTSCRETKEGAEKAGDAVENAA 39
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI001953335C (hypothetical protein n=1 Tax=Flavihalobacter algicola TaxID=1719034 RepID=UPI001953335C)

HSP 1 Score: 52.8 bits (125), Expect = 4.830e-6
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
            MKKLILNI  V+AL+VSV+SCR+TKEGA+ A D++ NA
Sbjct:    1 MKKLILNIALVLALVVSVTSCRETKEGAEKAGDAVENA 38
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI000AFE1EA4 (hypothetical protein n=1 Tax=Psychroserpens mesophilus TaxID=325473 RepID=UPI000AFE1EA4)

HSP 1 Score: 50.8 bits (120), Expect = 3.110e-5
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
            MKKL+LNIV V+AL+VSVS CR+TKEGA++AAD++ NA
Sbjct:    1 MKKLLLNIVLVLALIVSVS-CRETKEGAESAADAVENA 37
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BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: A0A5C6ZN41_9FLAO (Uncharacterized protein n=2 Tax=Subsaximicrobium wynnwilliamsii TaxID=291179 RepID=A0A5C6ZN41_9FLAO)

HSP 1 Score: 48.5 bits (114), Expect = 9.000e-5
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGN 111
            MKKL+LN    +ALLVSVSSCR+T+E  DNAAD++ N
Sbjct:    2 MKKLVLNSALALALLVSVSSCRETEESNDNAADAVEN 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI00058D053C6.550e-883.54hypothetical protein n=1 Tax=Psychroserpens damupo... [more]
UPI001F506EE02.510e-771.79hypothetical protein n=1 Tax=Arcticiflavibacter lu... [more]
UPI000478D4D87.270e-768.42hypothetical protein n=1 Tax=Sediminibacter sp. He... [more]
UPI001E48C8501.360e-671.05hypothetical protein n=1 Tax=Psychroserpens sp. XS... [more]
A0A5C7B8S8_9FLAO2.020e-668.42Uncharacterized protein n=2 Tax=Psychroserpens bur... [more]
UPI0006455ED92.020e-667.57hypothetical protein n=1 Tax=Psychroserpens sp. He... [more]
UPI0019531AD22.900e-664.10hypothetical protein n=1 Tax=Flavihalobacter algic... [more]
UPI001953335C4.830e-668.42hypothetical protein n=1 Tax=Flavihalobacter algic... [more]
UPI000AFE1EA43.110e-571.05hypothetical protein n=1 Tax=Psychroserpens mesoph... [more]
A0A5C6ZN41_9FLAO9.000e-564.86Uncharacterized protein n=2 Tax=Subsaximicrobium w... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101640contigP-canaliculata_contig101640:445..885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size441
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.5764017-CDS-P-canaliculata_contig101640:444..8851622815589.5764017-CDS-P-canaliculata_contig101640:444..885Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101640 445..885 -
1693494153.6132095-CDS-P-canaliculata_contig101640:444..8851693494153.6132095-CDS-P-canaliculata_contig101640:444..885Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101640 445..885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101640.254.1prot_P-canaliculata_contig101640.254.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101640 445..885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101640.254.1

>prot_P-canaliculata_contig101640.254.1 ID=prot_P-canaliculata_contig101640.254.1|Name=mRNA_P-canaliculata_contig101640.254.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=147bp
MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNAVDNAGDAIGDAA
EATGDAIEDAAEATGDAIEDGVDAVKEGAENAAEATGNVIDSTGSAIKEG
ANKIKDGAKEIANDAKDAMNNAKDGAKNKAKDVKDAANSAANKTKED
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mRNA from alignment at P-canaliculata_contig101640:445..885-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101640.254.1 ID=mRNA_P-canaliculata_contig101640.254.1|Name=mRNA_P-canaliculata_contig101640.254.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at P-canaliculata_contig101640:445..885- (Pelvetia canaliculata dioecious)
ATGAAAAAATTAATTTTGAACATCGTATTTGTAGTGGCACTTTTAGTGTC
TGTATCCTCATGTAGAGATACTAAAGAGGGAGCAGACAATGCTGCTGATT
CAATTGGCAACGCTGTTGATAATGCAGGAGATGCTATTGGAGATGCTGCT
GAAGCTACAGGCGATGCTATTGAAGATGCTGCCGAAGCAACAGGCGACGC
TATTGAAGATGGTGTTGATGCTGTAAAAGAAGGCGCTGAAAATGCTGCTG
AAGCCACAGGAAATGTCATTGACTCAACAGGATCAGCTATTAAAGAAGGT
GCTAATAAGATCAAAGACGGTGCTAAAGAAATTGCAAACGATGCTAAGGA
TGCTATGAATAACGCAAAAGATGGTGCTAAAAATAAGGCGAAGGATGTGA
AAGATGCTGCCAATAGTGCAGCAAATAAAACTAAAGAAGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig101640:445..885-

>mRNA_P-canaliculata_contig101640.254.1 ID=mRNA_P-canaliculata_contig101640.254.1|Name=mRNA_P-canaliculata_contig101640.254.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at P-canaliculata_contig101640:445..885- (Pelvetia canaliculata dioecious)
ATGAAAAAATTAATTTTGAACATCGTATTTGTAGTGGCACTTTTAGTGTC
TGTATCCTCATGTAGAGATACTAAAGAGGGAGCAGACAATGCTGCTGATT
CAATTGGCAACGCTGTTGATAATGCAGGAGATGCTATTGGAGATGCTGCT
GAAGCTACAGGCGATGCTATTGAAGATGCTGCCGAAGCAACAGGCGACGC
TATTGAAGATGGTGTTGATGCTGTAAAAGAAGGCGCTGAAAATGCTGCTG
AAGCCACAGGAAATGTCATTGACTCAACAGGATCAGCTATTAAAGAAGGT
GCTAATAAGATCAAAGACGGTGCTAAAGAAATTGCAAACGATGCTAAGGA
TGCTATGAATAACGCAAAAGATGGTGCTAAAAATAAGGCGAAGGATGTGA
AAGATGCTGCCAATAGTGCAGCAAATAAAACTAAAGAAGATATGAAAAAA
TTAATTTTGAACATCGTATTTGTAGTGGCACTTTTAGTGTCTGTATCCTC
ATGTAGAGATACTAAAGAGGGAGCAGACAATGCTGCTGATTCAATTGGCA
ACGCTGTTGATAATGCAGGAGATGCTATTGGAGATGCTGCTGAAGCTACA
GGCGATGCTATTGAAGATGCTGCCGAAGCAACAGGCGACGCTATTGAAGA
TGGTGTTGATGCTGTAAAAGAAGGCGCTGAAAATGCTGCTGAAGCCACAG
GAAATGTCATTGACTCAACAGGATCAGCTATTAAAGAAGGTGCTAATAAG
ATCAAAGACGGTGCTAAAGAAATTGCAAACGATGCTAAGGATGCTATGAA
TAACGCAAAAGATGGTGCTAAAAATAAGGCGAAGGATGTGAAAGATGCTG
CCAATAGTGCAGCAAATAAAACTAAAGAAGAT
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