mRNA_P-canaliculata_contig10155.243.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10155.243.1
Unique NamemRNA_P-canaliculata_contig10155.243.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10155.243.1 vs. uniprot
Match: A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 8.050e-25
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 2 
Query:  389 MATNGSELFLDRATRVRKIHQIAQFLASIENKDPQDRNLHTLAQKFENQIFSAAMNVEDYNNRIHKKLTKVQKVRQQQA 625
            MA NGSELFLDR TRVRKI QIA FLA IE KDPQDR+LH LAQKFENQIF+AAMNVEDYN RI+KKL+KV   R QQA
Sbjct:    1 MAANGSELFLDRNTRVRKIQQIATFLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNTRINKKLSKV---RHQQA 76
[Close]
BLAST of mRNA_P-canaliculata_contig10155.243.1 vs. uniprot
Match: A0A836CHY1_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.560e-8
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:  401 GSEL-FLDRATRVRKIHQIAQFLASIENKDPQDRNLHTLAQKFENQIFSAAMNVEDYNNRIHKKLTKVQKV 610
            GS+L  +DR    R   QIA+FLA++E KD  D +LH LA +FENQIFS A++ +DY  RI+KKL++V+K+
Sbjct:    7 GSDLQHVDRHACTR---QIAEFLANLEGKDKNDASLHELAGRFENQIFSVAVDFKDYQERINKKLSRVRKL 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10155.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNQ0_9PHAE8.050e-2579.75KIX_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CHY1_9STRA7.560e-852.11KIX_2 domain-containing protein n=1 Tax=Tribonema ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10155contigP-canaliculata_contig10155:2207..8801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size808
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10155.243.1prot_P-canaliculata_contig10155.243.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10155 2207..7300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.6851327-CDS-P-canaliculata_contig10155:2206..24071622815588.6851327-CDS-P-canaliculata_contig10155:2206..2407Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10155 2207..2407 -
1693494153.1347222-CDS-P-canaliculata_contig10155:2206..24071693494153.1347222-CDS-P-canaliculata_contig10155:2206..2407Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10155 2207..2407 -
1622815588.69942-CDS-P-canaliculata_contig10155:5888..60021622815588.69942-CDS-P-canaliculata_contig10155:5888..6002Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10155 5889..6002 -
1693494153.1430914-CDS-P-canaliculata_contig10155:5888..60021693494153.1430914-CDS-P-canaliculata_contig10155:5888..6002Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10155 5889..6002 -
1622815588.7144194-CDS-P-canaliculata_contig10155:7195..73001622815588.7144194-CDS-P-canaliculata_contig10155:7195..7300Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10155 7196..7300 -
1693494153.1514325-CDS-P-canaliculata_contig10155:7195..73001693494153.1514325-CDS-P-canaliculata_contig10155:7195..7300Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10155 7196..7300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.7255394-UTR-P-canaliculata_contig10155:7300..74341622815588.7255394-UTR-P-canaliculata_contig10155:7300..7434Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10155 7301..7434 -
1693494153.1597755-UTR-P-canaliculata_contig10155:7300..74341693494153.1597755-UTR-P-canaliculata_contig10155:7300..7434Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10155 7301..7434 -
1622815588.736614-UTR-P-canaliculata_contig10155:8547..88011622815588.736614-UTR-P-canaliculata_contig10155:8547..8801Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10155 8548..8801 -
1693494153.1698277-UTR-P-canaliculata_contig10155:8547..88011693494153.1698277-UTR-P-canaliculata_contig10155:8547..8801Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10155 8548..8801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10155.243.1

>prot_P-canaliculata_contig10155.243.1 ID=prot_P-canaliculata_contig10155.243.1|Name=mRNA_P-canaliculata_contig10155.243.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp
MATNGSELFLDRATRVRKIHQIAQFLASIENKDPQDRNLHTLAQKFENQI
FSAAMNVEDYNNRIHKKLTKVQKVRQQQAAAVQAKQGSQSLEQARLHQHQ
QQQQALQQRRRAPHQRQPHQQVTGGSLLQQQGLPIQTSTA
back to top

mRNA from alignment at P-canaliculata_contig10155:2207..8801-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10155.243.1 ID=mRNA_P-canaliculata_contig10155.243.1|Name=mRNA_P-canaliculata_contig10155.243.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6595bp|location=Sequence derived from alignment at P-canaliculata_contig10155:2207..8801- (Pelvetia canaliculata dioecious)
AAAGGCTCGAAAGTGTGATCCGAGGAGAAACTCCTCATCGAGAGATAGCT
TTCGGGCGTGAAGGTGTAGAGAGCTGAGGGGCAAAAAATCTTGCTTCGGA
CCCGCAGCTGATCTAAGAAAGCCGTTTTGACTGAGGGCGAAAAGGAGGAC
ATTTCCAAATCGGCTGAGCTGGGGACTAGCGTTTGCGCTATTGTCGCTGG
AGAGGTCGTAGGCGGAGCGTCAGGGCAATCTCACTCGAGAGTTCGCTGTC
AAGGGTAAGCACGTTGATAGGCGGCTGGGGAGGGCGTGTCTCGCCAACTA
CGAAGTAGCGAAGAACAGGATAGGATCGAAAAGACAGCGAGCGCCGCGAC
AGGTAGTTTTGTGTGTGGAGAGCACATAACCTTTTCGACCTTACTTTTGT
CCGAGACAGACGCCGCACCATACCTCGCCCCGACTCGGCTGTGATAAAAA
CGCTCACGTTACACATGCGAAGAGTATAGATAGGGCCTAAGATCCGCGAC
ACCCTTGCGGCGATGTCAATTTCCTCGTGATGTCCCCAATTTGAAGGTCC
GCGATATTTAGGTCGTTTCGGTTGTACTATACAGTTCGTACTCGGCGTCC
CCTCGACAACGGCGGGTGTAAGGCGCTCCGGCGGTAGCTGTGGGGTAGAC
GTAATCCTTTGACTTGAAGGCGTGAGTACTTGCTCCATGTGGAGTTTTCT
ACTTGAACTTGCACACGCTAGTGAAGGGTAGGCGTGACCCGAGAGTGGAG
AGGAAAGTATTGGGCACTTTCATTCCTTTTACATTCCCCAGCGGCCCACT
CGTCTCCCTGTAGTTTTTCTCTCCTAGCTGTAACCCAACGAACGCGCTTC
AAGCTTAGCGCAGATTTCCAATTTTTTGTTGGGGAGCCGGCACGACTCAA
CATATCGAAGTGGGCTCATACCGTTGCTGGATAGATGGGTGCTCGAGGTA
GACCTTGGTCGGAACGGCCATAGGGTACCTTCTCTTCAATTTTTAATAGA
CGAACGTTTCCATGGTGGCTCTCCCTTTTTACACTCCGTTTCCCAAGCGT
ATGAATTGCTAAGTTCTCTCAACCCAGTTCACCGCTGAATCATTTCTCAC
CAATACTGGTATATTCTCTAAGCGCATTGTCTATAGGAGCATTTTCATGG
TGGCGTTTGCTTCACTGCTGAGGTTGTTGTTCTTCCTCCACTCTTTTTCA
AAACTCATTTCATGACTATCATACCCGTCCCCCACACAAAACTTTTGAGG
CTGCTCTAAACCTTCGAGGCTTTGCTCAAGTAAAGAACCACAACCGCTCA
GCTCTGTGAGGTCTGATTCCATCCCAATTTTGTACGGTATAATACTCATT
TTTACTTCCTCTGGCAGATAAGGGGATCTTTGAAGCGGGTTCGTGGTCGC
AGTCCGCTTTTTGTGGTGGTGTCCTTCCCTGCTCCCTTCTGGGGAGGGCC
TCTCAAATCTGGCGAGAGGTGCGAGGAGCACCCTTGCCTTCGTCCCACAC
CATGGCGACGAACGGGAGTGAACTATTCCTGGACCGGGCCACGCGCGTCC
GCAAGATTCATCAAATTGCCCAGTTTCTAGCGTCAATCGAGAACAAGGAT
CCCCAGGTAAACTCACTCGCGGCTTATTTCAAAGTTACTAACAAAAACGA
TGTAAAACAAATAATACCAGGTATGAATTTAAGTAAAGGCACAAAGCAAA
GGAGACACACGTGCCTGCCCGAGCTCCCACCCAGACCCGACATACTCTAT
TGAAGTATTGCCTCGATTTTTGCGCTCGAGCGTTCGTGCTTCTCCACCAT
GAAACTTCAGGGAAAGTATTCGCCTCGATTCGTTTAGAGATCTAACGTTT
CCCTTTCCGCCGGAGCCAATTCTGCGCCGAGGTTGTGACCTGCTTCGATC
GTCGATCTAGTCTTGGCTTTAACCTCAGCGGGAATATTTTTAGATTTCTC
TTTTTCGAAGTAATTTGTACGACGTTCGATGTTGTTGTATTCTTCACATA
CCGTACTATTGTCGACATCATCTGAGCATTTTTTTCTGGATGTACTGGCA
CGTGGCACACTCCCTACCCTCATCCCTTAATATCCGTAATATTCTATCAA
AAGGATCGCAAGTTACTGCACTACGATTCCTTTTTCTCTTGATCTTTTCC
CTTTTTTACGTACCACCTTCACGGTTGTATCTCTGTACTATAGTGTATAC
CTGTTGACGTTTGGTGGTGCCGGAGGCTTAAGGCAGAAAGAGACTCTGAT
GTCCCTGGCAAGTAAAAATTGGGGCAAGTCTACCGTACTGCTCTAGTTTA
CTGATGAGATGCACTCACCCTCCTTTATCCATGCGTCGGCAGCGGCGATT
GTGTCTGACTTAACCCACGCGCCTGGGAAGTCGTTTGATTTATTTTCATG
GATGTGGCCTCTGCTTCAAGTATTTCCCTTCAAGTTTGCCATGGTCTTTA
TGAAGCTTCCCCTCGCGTGGACCGCTTTTGGTACTGCAGGTCAAACTATA
GTACTTCTCTGTGGCAGTACAAAAAAGCAGTAGTCGTTTTTTTTTCAGTA
GAAGAACCGATGGAATCCCGGCACCGTCTTTGGTTATATTTTCTGTTTTT
GATATGTAGTAATATTATGTAGTGGGGGGTATCAGTCTAAGCCTTTCACT
TTCCCACGCAAAACAGGCTTACTCTGGCTTTCATTCAAACCTTAGATATT
TTTTTACCCGTACGGAGAGTACTTTGTTATAAGTTTCTCCCGTTCCTCTC
GGCGCATGCCCGTTTCCGTCTACTGGACATGTCTCGTTCATCATGGCAGG
ATCGAAACCTGCACACCCTTGCTCAAAAGTTCGAGAACCAAATTTTCTCG
GCGGCTATGAATGTTGAGGACTATAACAATAGGATACACAAGAAGCTCAC
CAAGGTTCAGAAGGTGCGTCGATCCCTTATTGTTTTTTTTTTCTACTACT
GTGTGTAGCCAGTCTTGTGACCTGCCCTGCTACCGCTGCTGTACATAAAC
ACCAAGTAAACAAAAGGAAACGTCGATTAAGGAAAGTGTACAGTTTGTGT
GTTTTTTTTCCGACATTTGACTGTTGACCCTATGCTACTACCATTGAGGA
ACCCGTCTAAATGCCATGAAGAGGTTTTGTCTTTGCAGCCCATGTTCCCA
CCCAAACGTTTCGACATTTTCCCCCTTGCCTGGAGGTATGCTCAGAAGGT
TTGGACGCGTTCATACTTTCTTACAAACAATACATAAGTACAGCAGTGCA
GTTTAACTCCTACGAGTTTTTTTTTCTCCCTCTTTGATAACCAAGAGTCT
ACAGAGGACCTAAACCTACACAGCTGTTTGTGTACACATACTGCTGTACA
GCAACTTAGTTGTCGGGATTTTTTTATCTTTGTATTCAAGATGGCAAAAT
GTACGTTTCGCCGCCCGTGTGGAACTCGACTCCTGCATGGTGTCTGCTTC
AGACAGCATCCCCGACGACATCCTGCCGCCCGTAGTATACAGAGTGTCGA
CGCAGCTTCGGTCTAAACGTGGGTAAATGGCACCGTTCTCGTACTCGCAT
CCCCTCGTTTCAAAGGCGTCTAATCGTGGGTAAATTACACCGTTCTCGTA
CTTGCATATCCCCTCGTGTTTCAAAGGCGTCTAATCGTGGGTAAATTACA
CCGTTCTCGTACTTGCATATCCCCTCGTGTTTCAAAGGCGTCTAATCGTG
GATAAATGACACCGTTCTCGTACTCGCATCCCCTCGTGTTTCAAAGGCGT
CTATTCGTGGGTAAAATGCACCGTTTCCGTACTCGCATCCCCTCGTGTTT
CAAAGGCGTCTATTCGTGGGTAAATGACACCGTTCTCGTACTTGCATCCC
CTCGTGTTTCAAAGGCGTCTAATCGTGGGTAAATGACATCGTTCTCGTAC
TCGCATCCCCTCGTGTTTCAAGGCGTCTGATCGTGGGTAAATGACATCGT
TCTCGTACTCGCATTCCCTCGTGTTTCAAAGGCGTGTATTCTTGGGTAAA
TTACACCATTCTCGTACTCGCATCCCCTCGTGTTTCAAAGGTGTGTATTC
GTGGGTAAATTACACCGTTCTCGTACTCGCATACCCTCGTGTTTCAAAGG
CGTCATTTACTTACAAAAGCCCCGATTCTCAATTTATACCCCGCTTTAGT
TGGCACTGACTGCACTATATACAACACGAGTAGGAACTGTACTCCATTTT
TTTCATTTACTTTTTCCGATACCCTCCGCTACCAACTTCGTTCTAGAAAC
GGGATCTCTCCGTGTTCGTTTCCTCGGGGTCAGATATTACTGTCGGTACC
TTTTCCCAATCAACAAACGTCCTTGGACTTGACTTTTGGTTTCTCTTACT
CTGCCCCAAATGCAAACCTGTCCACAAAGCATTAGCCCAGCCAAATTAGT
TTTTTTAGGTTTTTGTGTAGTGTGTTTTCGCCCCATTTATTGGTTCCCTA
CGTGTTTCTGTAGCCCTATGCAAACATCAGTAAAACGGTGGGTGTTTCCC
TGATAATGGAGAGAGCCCGAGTAAATTTCTTGTGGAGTTTTTGTTCTCTA
ATATACAAAATAATATAGCAGGCAATGTTCCCACCTCTACACGTAAACTT
TTCGACACAGCTTCACACCGATCGATCAATCGATTGTGTTGATTCTACAG
TGCAGGTAAAAACAGCTACCAGGTAGCTGTAAGGAGATTCAGATCCTTCT
TGTATTACACCTACTAATGTTGTATTTTCCTCATCTATGGTATAAACCGA
ACTGGTTCAAAAACAAAATGTACGAGCAGCCCCTCTCTTCGATATGTAAT
GTATTGTATTGTAACCTTCCCATTTAGTTGCCCTCCCCTTCCGATAAAAT
GGCAGCAGCAGTACACCCGGAAGGCACACGTTGCTTTTTCGTTGTCCCCG
GGGGACGTAAGCTTATTTCGTTCGTTTTACATCTGTGCTACAAAGAAGTG
GTGCAGTAGTCATGAGGAAAAAATCGGAGGAAATGAATCACTCCCACTCA
AAAGTTGAGGGGTATCTTCACAGACTTGCTTGAGAGTTTCGAGAACTGTT
CTATTTAGACTAGACTAATCATACAGCAGTAGTGTTGGCGTCTATTCAAC
GTGCGAATGCGGCTCCTCCAGACGTGAAAGCACGAGTAAAAAGAAGCTCT
ACAGCTGTACCACGTTATTGAAAGTCTCATCGAGCGAAAAACACATCTTT
TTTTGTCCCGGTTCTACTAACAATACATCAGTACTCCTGCAATTTTCCAT
TTTTTCCCCTGGAAAGGCATCTCGGTCGACGGGGCGCATAGGTCCTACTA
ATGATACAGAGTACTGCTGCAATTTTACATTTTCCCCCCGGAAAGACATC
TCGGTCGACTGGGCGCATAAAAGCCGAAGCAACGGGTTCGCGCGCGAGCC
GTCGCGTACGCTGTCGCCACGCCGTGCCCGCGATGTTGTTGAAAGTGTTG
ACGGAAATTGGGAATTTCGATTTCAGCGATGTGCGATTTTTATTTGTGCA
GCACCTTGAGTCAATATTGAATACGAAGTACTGTATTCAGAGTTCGGTGT
AAAAGAGCACCTAACTCTGTATGTCCGTTGATCTTACAAACGCTCCCGAT
TCACTGTTCGTTTCCTGTGTTTGTACACTCAAAGCGAAGAAAAACTATTT
ATAGTGTACTACTAATATATCAATCTAAAATGATAATATCGTCGTATGAT
ACAGGAATCTCAACAATTCTTAGACTGAAACAGCAGCGTACCTGTGTACA
ACTCTGCACCGAGTACTACTAAAATAATACGCCTTTGGCCTGCACACTGC
GACGGTTCGCTCGCCTCTACGTACGTAAGCTGTAAAATTACTTCTTTTCT
GAAGACGAACAGTAGTAGTGGCCAGGAATTCCCCGTTGGATTTTCCACCG
GAAAGTTCTGGTAAGATTACGTATCTTGTGCTCGCTGCTCGTACCCTTGC
GGTATTTCAGTAAAAGGTACTTGTTGTGAAGTACTTAGAGGTATAAATAC
TGTCTGTAGTATAAAGTACCGTCTGTAGCATAAAAACTGTCAGTAGTTTT
TTTGTACAGTACGAGCTCGAGTCTGACGTCACCCGAGGCCCCCGAATTTC
TCACCGCTAAAGCTGGTAAGATCACACTGCTTTTTGTATAGTTCTTCATC
TTTGAAGTTCTAGTAGCACGTCATTTCCGTTTTTGTTCCGTGGCATCTTG
TGCAATATTATCTTCCCTACAACTTGTACAGCACTTAATTTATTTACATC
GGGAACACCAGGAACGAGTAACCGATTCATTTGGCGCTCAACAGTTGGCC
ATTGTGCCCCAATCATGCTCTTACGGATTTGAGATACAGTACACATCCAC
ACAGACAAAAACAACAGCCCACGTGTGCTGCTTCTGTCGCGCAGGTGCGG
CAGCAACAGGCAGCGGCGGTACAAGCAAAGCAGGGCTCTCAGTCCCTCGA
ACAGGCTCGCCTGCATCAGCATCAGCAGCAGCAGCAGGCACTGCAGCAAC
GACGGCGGGCGCCGCACCAACGACAGCCACACCAGCAGGTTACTGGTGGC
AGTCTCTTACAGCAGCAGGGCTTGCCGATACAGACTTCGACGGCG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10155:2207..8801-

>mRNA_P-canaliculata_contig10155.243.1 ID=mRNA_P-canaliculata_contig10155.243.1|Name=mRNA_P-canaliculata_contig10155.243.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at P-canaliculata_contig10155:2207..8801- (Pelvetia canaliculata dioecious)
ATGGCGACGAACGGGAGTGAACTATTCCTGGACCGGGCCACGCGCGTCCG
CAAGATTCATCAAATTGCCCAGTTTCTAGCGTCAATCGAGAACAAGGATC
CCCAGATGGCGACGAACGGGAGTGAACTATTCCTGGACCGGGCCACGCGC
GTCCGCAAGATTCATCAAATTGCCCAGTTTCTAGCGTCAATCGAGAACAA
GGATCCCCAGGATCGAAACCTGCACACCCTTGCTCAAAAGTTCGAGAACC
AAATTTTCTCGGCGGCTATGAATGTTGAGGACTATAACAATAGGATACAC
AAGAAGCTCACCAAGGTTCAGAAGGATCGAAACCTGCACACCCTTGCTCA
AAAGTTCGAGAACCAAATTTTCTCGGCGGCTATGAATGTTGAGGACTATA
ACAATAGGATACACAAGAAGCTCACCAAGGTTCAGAAGGTGCGGCAGCAA
CAGGCAGCGGCGGTACAAGCAAAGCAGGGCTCTCAGTCCCTCGAACAGGC
TCGCCTGCATCAGCATCAGCAGCAGCAGCAGGCACTGCAGCAACGACGGC
GGGCGCCGCACCAACGACAGCCACACCAGCAGGTTACTGGTGGCAGTCTC
TTACAGCAGCAGGGCTTGCCGATACAGACTTCGACGGCGGTGCGGCAGCA
ACAGGCAGCGGCGGTACAAGCAAAGCAGGGCTCTCAGTCCCTCGAACAGG
CTCGCCTGCATCAGCATCAGCAGCAGCAGCAGGCACTGCAGCAACGACGG
CGGGCGCCGCACCAACGACAGCCACACCAGCAGGTTACTGGTGGCAGTCT
CTTACAGCAGCAGGGCTTGCCGATACAGACTTCGACGGCG
back to top