mRNA_P-canaliculata_contig99957.24106.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99957.24106.1
Unique NamemRNA_P-canaliculata_contig99957.24106.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A7Y2NFT9_9ACTN (PKD domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2NFT9_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 5.740e-11
Identity = 54/155 (34.84%), Postives = 85/155 (54.84%), Query Frame = 1
Query:   37 PVVEVEENNGRTTTAQDIDGAAFNLSANVNIAN-----STTIPHVTILGLGDNSSDFYQFTVPQGADIRIESDSVVGFG-GNVQ----------LRLGSGNNSNVQTSSNGLLIRNN-------VTAGTYTVRVRDLAAGNVPLGASYQLHVSIE 432
            PV EVE N+    TAQ++DG ++NL+ + +I +     STTIPH++ILG G+N+ D+Y FTV  G+    + D    +G G+V           + L S ++S+    + G +   +        +AGTY +RVR+     VP GA+Y L VS++
Sbjct:   32 PVPEVEPNDS-IATAQNVDGESWNLNYSPDIGDTSSNTSTTIPHISILGTGNNTFDYYSFTVAAGSFGIFDIDYGETYGPGSVDTWLHLFDSSGVLLASDDDSSTSWGAGGSVDSYDSYIEYTFASAGTYVIRVREYFDYPVPAGATYTLQVSLD 185          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A5C6EGD1_9BACT (Matrixin n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EGD1_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 7.340e-9
Identity = 49/148 (33.11%), Postives = 68/148 (45.95%), Query Frame = 1
Query:   61 NGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQGAD--------------IRIESDSVVGFGGNVQLRLGSGNNSNVQTSSNGLLIRNNVTA-GTYTVRVR---------DLAAGNVPLGASYQLHVSIE 432
            N    TAQ +DG A+ L  NV+I NSTT PH TI G+GDN+ D++ FTV    D              + +   +     GN      SG+ SN+ +      I +  TA GTY + V           +    VP G  Y+LHVS++
Sbjct: 3185 NDTIATAQSLDGNAWTLQTNVDITNSTTRPHQTINGIGDNTYDYFSFTVQNAGDTATFDIDAGAFDTELHLYDAAGTPLNGNDDAGGDSGSTSNLDS-----FITHTFTAPGTYIIGVAAFPSSTTAGGITGSPVPNGGFYRLHVSLD 3327          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A5C6E826_9BACT (Cadherin domain-containing protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6E826_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.360e-8
Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   61 NGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQ-GADIRIESDSVVGFGGNVQLRLGSGN-------NSNVQTSSNGLL-IRNN------VTAGTYTVRVRDLA--------AGN-VPLGASYQLHVSIE 432
            N    TAQ++DG  ++L  + NI NST  PH++I  LGDN+ D+Y FTV Q GA    + D+   F   + L   SGN       + NV    NG   IR++       T G YT+ V   +        AGN VP G  YQL++S++
Sbjct: 3258 NDSLATAQNLDGEEWSLGFDTNIDNSTARPHLSISALGDNTFDYYSFTVDQAGATAGFDIDAS-SFDTELFLYDSSGNLLAANDDDYNVSPGDNGTTSIRDSYIEYTFATPGVYTIAVGQFSSYDFLGGLAGNPVPFGGVYQLNISLD 3404          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A5C6A3K0_9BACT (Bifunctional hemolysin/adenylate cyclase n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6A3K0_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.360e-8
Identity = 53/157 (33.76%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   40 VVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQGA----DIRIESDSVVGFGGNVQLRLGSGNNSNVQTSSNG-------LLIRNNVTAGTYTVRVR-------------DLAAGNVPLGASYQLHVSIEDH 438
            V E E N+ R T AQDIDG  + L+ N N+  ST+IPHV+I G GDNS D++ FT   G     DI   S     F  +    L + N+ N+  +  G        +     ++GT+ + V              D   G +  G +Y LHVSIE+H
Sbjct: 6028 VAEYEPNDSRLT-AQDIDGENWTLANNPNVEQSTSIPHVSITGTGDNSIDYFSFTANAGDRAIFDIDANSFDTELFLFDEAGMLLAANDDNIGPNDAGQGDGVSSFIDYTFQSSGTFVIGVSGYNSKAENGEIVPDGVGGPIQPGETYTLHVSIENH 6183          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A2N5KJC2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5KJC2_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 5.770e-8
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   28 LDVPVVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQ 213
            L  PV EVE N+  T  AQ+ID   F+L  N  I+NSTT+PH T+ G G+++ D+Y FTVP+
Sbjct:   19 LSAPVNEVEPNDS-TAQAQNID-RYFSLDNNPEISNSTTVPHATVNGTGNDTFDYYSFTVPE 78          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A539DBS3_9BACT (Serralysin (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A539DBS3_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-7
Identity = 45/139 (32.37%), Postives = 66/139 (47.48%), Query Frame = 1
Query:   52 EENNGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQGADIRIESDSV-------VGFGGNVQLRLGSGNNSNVQTSSNGLLIRNNVTAGTYTVRVRDLAAGNVPL-------GASYQLHVS 426
            +  NG   TA  + GA F+L  N  IA+STTIPH T++     + ++Y+ TV  G  +  + D         +  G  V+L     N S+   S++  L     TAGTY ++V    +G+ P        G SY LHVS
Sbjct:  650 DTTNGSIGTAVSLSGA-FDLFENPAIADSTTIPHATVVATSHGNVEYYRVTVTAGETVNFDIDGATFDSTLRLFDGAGVELASNDDNASDGGDSTDSALSHTFATAGTYYIQVGRWVSGSAPFVSGPPPAGQSYTLHVS 787          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A2E8D4E2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D4E2_9PLAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.360e-6
Identity = 50/162 (30.86%), Postives = 78/162 (48.15%), Query Frame = 1
Query:   34 VPVVEVEENNGRTTTAQDIDGAAFNLSANVNIAN-----STTIPHVTILGLGDNSSDFYQFTVPQGADIRIESDSV-----------VGF--GGNVQLRLGSGNNSNVQTSSNGLLIRNNVTAGTYTVRV--------RDLAAGNVP-LGASYQLHVSIEDH 438
            +PVV+ E NN      Q++DG  ++L+++ +I +     S +IPH+TILG GD++ D+YQFTV  G+    + D+            +GF    N      S        +S+  L    +T G YT+ V          +  G+ P  G SY+L VS+E H
Sbjct: 4219 IPVVDAEPNN-TLAAPQNLDGERWSLASDRDIGDTSMNTSMSIPHLTILGSGDSTFDYYQFTVSAGSRGIFDIDAANFDTELFLFDELGFELAANDNAASASDGEGGSTVTSDSFLEFTFLTTGLYTLAVGKFDSSVTAGVLGGSTPDPGDSYELQVSVEGH 4379          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A099K8F1_COLPS (Pseudolysin n=1 Tax=Colwellia psychrerythraea TaxID=28229 RepID=A0A099K8F1_COLPS)

HSP 1 Score: 56.6 bits (135), Expect = 2.450e-6
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   40 VVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTT-----IPHVTILGLGDNSSDFYQF---TVPQGA--DIRIESDSVVGFGGNVQLR------LGSGNNSNVQTSSNG-------LLIRNNVTAGTYTVRVRDLAAGNVPLGASYQLHVSIED 435
            V++ E NN     AQ+ID   FNL+ + NI + TT     +PHV+I+G GD S D+++F   T P  A  D+   S     F   ++L       L S +++N+    +G        L+      GTY ++V   +   +P  A+Y LHVSIE+
Sbjct:  674 VIDTESNNS-IAEAQNID-TGFNLNYSENIGDQTTNTSQVMPHVSIIGSGDESYDYFEFSILTAPSQAIFDVDNGSGGTGSFDSYLRLYDEQGNLLSSNDDANLSYGESGSTSGLDSFLMHTFSEVGTYYIKVSRYSDSIIPNNATYTLHVSIEN 826          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A0P1GKH4_9RHOB (Poly(Beta-D-mannuronate) C5 epimerase 1 n=3 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GKH4_9RHOB)

HSP 1 Score: 55.1 bits (131), Expect = 7.990e-6
Identity = 51/169 (30.18%), Postives = 80/169 (47.34%), Query Frame = 1
Query:   40 VVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQ-GADIRIESDSVVGFGGNVQLRLGSGNNSNVQ--------------TSSNGLLIRNNVTAGTYTVRVRDLAAGN-----VPLGASYQLHVS----IEDHATPTPTTVTIPA 474
            ++E+E NN     AQ++DG  F L+ N NI NS T+P V I+G G+N++D+Y FTV + G  +  + D     GG+    +   N++  +              +S +  L     T GTY + V      +     VP G +Y+L ++    I    T   T +TIPA
Sbjct:  139 IIEIEPNNS-IAQAQNLDGL-FTLNPNPNILNSDTLPSVNIVGTGNNTADYYAFTVTEAGTSMHFDIDFGSSSGGSFDAYIHLWNSAGARISRSDDSPRDPGSVSSLDSELSYTFSTPGTYYISVGRFPGYSNPDNPVPSGGTYELQITTTAQIGGVGTDEDTALTIPA 305          
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A3D0CGC0_COLSX (Uncharacterized protein (Fragment) n=1 Tax=Colwellia sp. TaxID=56799 RepID=A0A3D0CGC0_COLSX)

HSP 1 Score: 55.1 bits (131), Expect = 8.210e-6
Identity = 49/155 (31.61%), Postives = 73/155 (47.10%), Query Frame = 1
Query:   40 VVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTT-----IPHVTILGLGDNSSDFYQF---TVPQGADIRIESDSVVGFGGNVQLRL---------------GSGNNSNVQTSSNGLLIRNNVTAGTYTVRVRDLAAGNVPLGASYQLHVSIED 435
            +++ E NN     AQ+ID A FNL+ + +I + TT     +PHV+I+G GD S D+++F   T P  A   I+  S V    +  LRL                S   S   +S +  L       GTY ++V       +P  A+Y LH+SIE+
Sbjct:  674 IIDTESNNS-IAEAQNID-AGFNLNYSDDIGDQTTNTSQVMPHVSIIGSGDESYDYFEFSIVTAPSRAIFDIDDGSGVSGAFDSYLRLYDDQENLLSSNDDASSSYGESGSTSSLDSFLTYTFSEVGTYYIKVSRYTDSIIPNDATYTLHISIEN 826          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7Y2NFT9_9ACTN5.740e-1134.84PKD domain-containing protein n=1 Tax=Acidimicrobi... [more]
A0A5C6EGD1_9BACT7.340e-933.11Matrixin n=1 Tax=Rubripirellula reticaptiva TaxID=... [more]
A0A5C6E826_9BACT1.360e-836.49Cadherin domain-containing protein n=1 Tax=Novipir... [more]
A0A5C6A3K0_9BACT1.360e-833.76Bifunctional hemolysin/adenylate cyclase n=1 Tax=S... [more]
A0A2N5KJC2_9ACTN5.770e-850.00Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A539DBS3_9BACT1.460e-732.37Serralysin (Fragment) n=1 Tax=bacterium TaxID=1869... [more]
A0A2E8D4E2_9PLAN1.360e-630.86Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A099K8F1_COLPS2.450e-632.26Pseudolysin n=1 Tax=Colwellia psychrerythraea TaxI... [more]
A0A0P1GKH4_9RHOB7.990e-630.18Poly(Beta-D-mannuronate) C5 epimerase 1 n=3 Tax=Tr... [more]
A0A3D0CGC0_COLSX8.210e-631.61Uncharacterized protein (Fragment) n=1 Tax=Colwell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99957contigP-canaliculata_contig99957:234..707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog583355.Caka_2045
Preferred namemurD
KEGG rclassRC00064,RC00090,RC00141
KEGG koko:K01317,ko:K01925,ko:K01928,ko:K01932
KEGG ReactionR02783,R02788
KEGG Pathwayko00300,ko00471,ko00550,ko01100,map00300,map00471,map00550,map01100
EggNOG free text desc.Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
EggNOG OGsCOG0771@1,COG0771@2,COG2911@1,COG2911@2,COG2931@1,COG2931@2
EC3.4.21.10,6.3.2.13,6.3.2.9
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01011,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.78481-CDS-P-canaliculata_contig99957:233..7071622817358.78481-CDS-P-canaliculata_contig99957:233..707Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99957 234..707 +
1693495245.8817687-CDS-P-canaliculata_contig99957:233..7071693495245.8817687-CDS-P-canaliculata_contig99957:233..707Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99957 234..707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99957.24106.1prot_P-canaliculata_contig99957.24106.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99957 234..707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99957.24106.1

>prot_P-canaliculata_contig99957.24106.1 ID=prot_P-canaliculata_contig99957.24106.1|Name=mRNA_P-canaliculata_contig99957.24106.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=158bp
TAAYGADYWLDVPVVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTTIP
HVTILGLGDNSSDFYQFTVPQGADIRIESDSVVGFGGNVQLRLGSGNNSN
VQTSSNGLLIRNNVTAGTYTVRVRDLAAGNVPLGASYQLHVSIEDHATPT
PTTVTIPA
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mRNA from alignment at P-canaliculata_contig99957:234..707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99957.24106.1 ID=mRNA_P-canaliculata_contig99957.24106.1|Name=mRNA_P-canaliculata_contig99957.24106.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at P-canaliculata_contig99957:234..707+ (Pelvetia canaliculata dioecious)
ACCGCCGCTTACGGTGCGGATTATTGGTTGGATGTTCCCGTCGTTGAGGT AGAAGAAAATAATGGACGGACGACAACAGCCCAAGATATTGATGGGGCCG CATTTAACTTGTCCGCCAATGTGAACATTGCAAATTCGACAACGATTCCG CACGTAACCATTCTAGGGTTAGGGGACAATTCGAGCGACTTCTATCAGTT TACTGTTCCTCAAGGTGCAGACATTCGTATTGAGTCCGATTCGGTAGTCG GTTTCGGCGGCAACGTGCAACTGCGATTGGGGTCCGGCAACAATTCAAAC GTTCAAACCAGTAGTAACGGTCTGCTTATTCGCAACAACGTGACAGCCGG TACGTACACGGTTCGTGTCCGCGACTTGGCAGCTGGCAACGTGCCCCTTG GCGCAAGCTACCAACTGCATGTTTCTATCGAAGACCACGCGACCCCGACG CCAACCACGGTCACGATTCCTGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig99957:234..707+

>mRNA_P-canaliculata_contig99957.24106.1 ID=mRNA_P-canaliculata_contig99957.24106.1|Name=mRNA_P-canaliculata_contig99957.24106.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at P-canaliculata_contig99957:234..707+ (Pelvetia canaliculata dioecious)
ACCGCCGCTTACGGTGCGGATTATTGGTTGGATGTTCCCGTCGTTGAGGT
AGAAGAAAATAATGGACGGACGACAACAGCCCAAGATATTGATGGGGCCG
CATTTAACTTGTCCGCCAATGTGAACATTGCAAATTCGACAACGATTCCG
CACGTAACCATTCTAGGGTTAGGGGACAATTCGAGCGACTTCTATCAGTT
TACTGTTCCTCAAGGTGCAGACATTCGTATTGAGTCCGATTCGGTAGTCG
GTTTCGGCGGCAACGTGCAACTGCGATTGGGGTCCGGCAACAATTCAAAC
GTTCAAACCAGTAGTAACGGTCTGCTTATTCGCAACAACGTGACAGCCGG
TACGTACACGGTTCGTGTCCGCGACTTGGCAGCTGGCAACGTGCCCCTTG
GCGCAAGCTACCAACTGCATGTTTCTATCGAAGACCACGCGACCCCGACG
CCAACCACGGTCACGATTCCTGCCACCGCCGCTTACGGTGCGGATTATTG
GTTGGATGTTCCCGTCGTTGAGGTAGAAGAAAATAATGGACGGACGACAA
CAGCCCAAGATATTGATGGGGCCGCATTTAACTTGTCCGCCAATGTGAAC
ATTGCAAATTCGACAACGATTCCGCACGTAACCATTCTAGGGTTAGGGGA
CAATTCGAGCGACTTCTATCAGTTTACTGTTCCTCAAGGTGCAGACATTC
GTATTGAGTCCGATTCGGTAGTCGGTTTCGGCGGCAACGTGCAACTGCGA
TTGGGGTCCGGCAACAATTCAAACGTTCAAACCAGTAGTAACGGTCTGCT
TATTCGCAACAACGTGACAGCCGGTACGTACACGGTTCGTGTCCGCGACT
TGGCAGCTGGCAACGTGCCCCTTGGCGCAAGCTACCAACTGCATGTTTCT
ATCGAAGACCACGCGACCCCGACGCCAACCACGGTCACGATTCCTGCC
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