mRNA_P-canaliculata_contig99818.24098.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99818.24098.1
Unique NamemRNA_P-canaliculata_contig99818.24098.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99818.24098.1 vs. uniprot
Match: A0A423S3E3_9BURK (Uncharacterized protein n=1 Tax=Pusillimonas sp. NJUB218 TaxID=2023230 RepID=A0A423S3E3_9BURK)

HSP 1 Score: 52.8 bits (125), Expect = 2.460e-6
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 MALTVEDGSGTDTSVNSYVSVTEFTEFLTNRNLSVTAGSE---EALILRATDIIEQQN-YKGNKTTTTQALSFPR 213
            MAL VEDG+G++ S  SY+SV + T +    NL  T GSE   EA + RAT  ++ +  YKG + T +QAL++PR
Sbjct:    1 MALIVEDGTGSNPSAESYISVADCTTYAAAHNLVFT-GSESEQEARLRRATQYLDAEYAYKGEQLTASQALAWPR 74
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BLAST of mRNA_P-canaliculata_contig99818.24098.1 vs. uniprot
Match: A0A5H2QAA3_9CAUD (Structural protein n=1 Tax=Achromobacter phage vB_Ade_ART TaxID=2292880 RepID=A0A5H2QAA3_9CAUD)

HSP 1 Score: 50.8 bits (120), Expect = 1.720e-5
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    1 MALTVEDGSGTDTSVNSYVSVTEFTEFLTNRNLSVTAGSE--EALILRATDIIEQ--QNYKGNKTTTTQALSFPRSNIY-DKENISYDENSIPKSIKIS 282
            MAL VEDG+G +T+ NSY+ V     +  +R L ++      E  I+ A D +E   + +KG + T+TQALS+PR+++  D E  ++ ++ IP  +K++
Sbjct:    1 MALIVEDGTGKETA-NSYIDVQFARAYAQSRGLPISDDDAVVEGWIVMACDYVESFAEQFKGKRKTSTQALSWPRTDVVIDGE--AFPDDKIPTQLKLA 96
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BLAST of mRNA_P-canaliculata_contig99818.24098.1 vs. uniprot
Match: UPI000E20F2BA (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000E20F2BA)

HSP 1 Score: 49.7 bits (117), Expect = 4.450e-5
Identity = 29/93 (31.18%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 MALTVEDGSGTDTSVNSYVSVTEFTEF--LTNRNLSVTAGSEEALILRATDIIEQQ---NYKGNKTTTTQALSFPRSNIYDKENISYDENSIP 264
            MAL +E GS    + N+++S+ +F  +  L    +  T     A ++R+ + +E +    + G+K +  QALS+PR N+YD+++ SYD + +P
Sbjct:    1 MALIIETGSVVP-NANTFISLDDFKAYCILVGYLIETTDDEVSAALVRSANYLENRYRTRWVGSKASRDQALSWPRKNVYDEDDYSYDSDVVP 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99818.24098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A423S3E3_9BURK2.460e-645.33Uncharacterized protein n=1 Tax=Pusillimonas sp. N... [more]
A0A5H2QAA3_9CAUD1.720e-535.35Structural protein n=1 Tax=Achromobacter phage vB_... [more]
UPI000E20F2BA4.450e-531.18hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99818contigP-canaliculata_contig99818:79..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score63.2
Seed ortholog evalue8.4e-08
Seed eggNOG ortholog1476390.A0A060RF73_9CAUD
EggNOG OGs4QBSW@10239,4QN72@10699,4QQDX@28883,4QVFT@35237
Best tax levelSiphoviridae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.3787212-CDS-P-canaliculata_contig99818:78..3871622817357.3787212-CDS-P-canaliculata_contig99818:78..387Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99818 79..387 -
1693495244.8869982-CDS-P-canaliculata_contig99818:78..3871693495244.8869982-CDS-P-canaliculata_contig99818:78..387Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99818 79..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99818.24098.1prot_P-canaliculata_contig99818.24098.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99818 79..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99818.24098.1

>prot_P-canaliculata_contig99818.24098.1 ID=prot_P-canaliculata_contig99818.24098.1|Name=mRNA_P-canaliculata_contig99818.24098.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
MALTVEDGSGTDTSVNSYVSVTEFTEFLTNRNLSVTAGSEEALILRATDI
IEQQNYKGNKTTTTQALSFPRSNIYDKENISYDENSIPKSIKISVIYLAW
YIN
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mRNA from alignment at P-canaliculata_contig99818:79..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99818.24098.1 ID=mRNA_P-canaliculata_contig99818.24098.1|Name=mRNA_P-canaliculata_contig99818.24098.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at P-canaliculata_contig99818:79..387- (Pelvetia canaliculata dioecious)
ATGGCACTGACAGTTGAAGACGGTAGTGGAACTGATACCTCAGTTAACAG
TTACGTAAGCGTAACTGAATTTACTGAGTTTCTTACTAACCGAAATTTGT
CAGTAACCGCTGGTTCGGAAGAAGCACTTATCTTACGCGCGACTGATATA
ATAGAACAACAAAATTATAAAGGAAATAAAACAACAACTACGCAGGCGTT
ATCGTTTCCTCGTTCTAATATATATGATAAAGAAAATATTTCATATGATG
AAAATAGTATTCCAAAATCAATAAAAATATCTGTAATATACCTTGCGTGG
TATATCAAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig99818:79..387-

>mRNA_P-canaliculata_contig99818.24098.1 ID=mRNA_P-canaliculata_contig99818.24098.1|Name=mRNA_P-canaliculata_contig99818.24098.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig99818:79..387- (Pelvetia canaliculata dioecious)
ATGGCACTGACAGTTGAAGACGGTAGTGGAACTGATACCTCAGTTAACAG
TTACGTAAGCGTAACTGAATTTACTGAGTTTCTTACTAACCGAAATTTGT
CAGTAACCGCTGGTTCGGAAGAAGCACTTATCTTACGCGCGACTGATATA
ATAGAACAACAAAATTATAAAGGAAATAAAACAACAACTACGCAGGCGTT
ATCGTTTCCTCGTTCTAATATATATGATAAAGAAAATATTTCATATGATG
AAAATAGTATTCCAAAATCAATAAAAATATCTGTAATATACCTTGCGTGG
TATATCAATATGGCACTGACAGTTGAAGACGGTAGTGGAACTGATACCTC
AGTTAACAGTTACGTAAGCGTAACTGAATTTACTGAGTTTCTTACTAACC
GAAATTTGTCAGTAACCGCTGGTTCGGAAGAAGCACTTATCTTACGCGCG
ACTGATATAATAGAACAACAAAATTATAAAGGAAATAAAACAACAACTAC
GCAGGCGTTATCGTTTCCTCGTTCTAATATATATGATAAAGAAAATATTT
CATATGATGAAAATAGTATTCCAAAATCAATAAAAATATCTGTAATATAC
CTTGCGTGGTATATCAAT
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