mRNA_P-canaliculata_contig99756.24093.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99756.24093.1
Unique NamemRNA_P-canaliculata_contig99756.24093.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99756.24093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99756contigP-canaliculata_contig99756:11..592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.0350006-CDS-P-canaliculata_contig99756:10..5921622817357.0350006-CDS-P-canaliculata_contig99756:10..592Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99756 11..592 +
1693495244.7043872-CDS-P-canaliculata_contig99756:10..5921693495244.7043872-CDS-P-canaliculata_contig99756:10..592Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99756 11..592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99756.24093.1prot_P-canaliculata_contig99756.24093.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99756 11..592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99756.24093.1

>prot_P-canaliculata_contig99756.24093.1 ID=prot_P-canaliculata_contig99756.24093.1|Name=mRNA_P-canaliculata_contig99756.24093.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=194bp
YERRRSFGATEKIEDDIQLRVIDHLYPHVLAGLFAGRINSIPEGALRQAK
IAVKANELTQRDIASHEYLDSEQPGVNLNYVHLMRAWLLYKQEPDPNTRL
RKYLDWSYKKSLNSKQIALFMSIFLSNNRLPRMIKGLDGKDPEKLLANIR
NAAWDVFYLGSVETLTKKPAGETNTCWCLVTRDKLLARLGADIL
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mRNA from alignment at P-canaliculata_contig99756:11..592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99756.24093.1 ID=mRNA_P-canaliculata_contig99756.24093.1|Name=mRNA_P-canaliculata_contig99756.24093.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at P-canaliculata_contig99756:11..592+ (Pelvetia canaliculata dioecious)
TATGAGCGACGAAGGTCTTTTGGAGCAACCGAAAAAATTGAGGACGATAT
TCAACTCAGAGTAATCGACCATCTCTATCCACATGTTCTCGCCGGTTTAT
TTGCAGGGAGAATTAATTCGATCCCAGAGGGCGCATTACGGCAAGCTAAA
ATTGCGGTCAAAGCAAATGAGCTTACTCAGAGAGATATAGCATCACACGA
ATATCTTGATAGTGAACAACCAGGTGTGAATCTTAACTATGTCCACCTGA
TGCGTGCATGGCTTCTCTACAAGCAAGAACCCGATCCCAATACTAGACTT
CGCAAGTATTTGGATTGGAGCTATAAAAAATCTTTAAATTCAAAACAAAT
TGCTTTGTTTATGTCAATATTTCTTTCAAACAACAGATTGCCACGAATGA
TAAAGGGTCTCGATGGAAAGGATCCAGAAAAGCTGCTCGCAAATATTAGG
AATGCAGCTTGGGATGTATTTTATTTAGGTTCGGTCGAAACGCTTACAAA
GAAACCGGCAGGTGAAACTAACACATGCTGGTGTCTGGTAACCCGAGATA
AATTGCTAGCACGCTTAGGAGCAGACATACTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig99756:11..592+

>mRNA_P-canaliculata_contig99756.24093.1 ID=mRNA_P-canaliculata_contig99756.24093.1|Name=mRNA_P-canaliculata_contig99756.24093.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at P-canaliculata_contig99756:11..592+ (Pelvetia canaliculata dioecious)
TATGAGCGACGAAGGTCTTTTGGAGCAACCGAAAAAATTGAGGACGATAT
TCAACTCAGAGTAATCGACCATCTCTATCCACATGTTCTCGCCGGTTTAT
TTGCAGGGAGAATTAATTCGATCCCAGAGGGCGCATTACGGCAAGCTAAA
ATTGCGGTCAAAGCAAATGAGCTTACTCAGAGAGATATAGCATCACACGA
ATATCTTGATAGTGAACAACCAGGTGTGAATCTTAACTATGTCCACCTGA
TGCGTGCATGGCTTCTCTACAAGCAAGAACCCGATCCCAATACTAGACTT
CGCAAGTATTTGGATTGGAGCTATAAAAAATCTTTAAATTCAAAACAAAT
TGCTTTGTTTATGTCAATATTTCTTTCAAACAACAGATTGCCACGAATGA
TAAAGGGTCTCGATGGAAAGGATCCAGAAAAGCTGCTCGCAAATATTAGG
AATGCAGCTTGGGATGTATTTTATTTAGGTTCGGTCGAAACGCTTACAAA
GAAACCGGCAGGTGAAACTAACACATGCTGGTGTCTGGTAACCCGAGATA
AATTGCTAGCACGCTTAGGAGCAGACATACTCTATGAGCGACGAAGGTCT
TTTGGAGCAACCGAAAAAATTGAGGACGATATTCAACTCAGAGTAATCGA
CCATCTCTATCCACATGTTCTCGCCGGTTTATTTGCAGGGAGAATTAATT
CGATCCCAGAGGGCGCATTACGGCAAGCTAAAATTGCGGTCAAAGCAAAT
GAGCTTACTCAGAGAGATATAGCATCACACGAATATCTTGATAGTGAACA
ACCAGGTGTGAATCTTAACTATGTCCACCTGATGCGTGCATGGCTTCTCT
ACAAGCAAGAACCCGATCCCAATACTAGACTTCGCAAGTATTTGGATTGG
AGCTATAAAAAATCTTTAAATTCAAAACAAATTGCTTTGTTTATGTCAAT
ATTTCTTTCAAACAACAGATTGCCACGAATGATAAAGGGTCTCGATGGAA
AGGATCCAGAAAAGCTGCTCGCAAATATTAGGAATGCAGCTTGGGATGTA
TTTTATTTAGGTTCGGTCGAAACGCTTACAAAGAAACCGGCAGGTGAAAC
TAACACATGCTGGTGTCTGGTAACCCGAGATAAATTGCTAGCACGCTTAG
GAGCAGACATACTC
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