mRNA_P-canaliculata_contig99738.24089.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99738.24089.1
Unique NamemRNA_P-canaliculata_contig99738.24089.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A431IPZ5_9ACTN (HK97 gp10 family phage protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A431IPZ5_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 1.980e-9
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQGVR 114
            N +PY +RLEYGWS+Q+PAGM+R+ +A +D IVA G +
Sbjct:   89 NGLPYAQRLEYGWSKQAPAGMVRVTVAEFDSIVAAGAQ 126          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A291AX91_9CAUD (Putative tail protein n=12 Tax=root TaxID=1 RepID=A0A291AX91_9CAUD)

HSP 1 Score: 54.3 bits (129), Expect = 4.780e-8
Identity = 19/35 (54.29%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQ 105
            N++PY  RLEYGWS+Q+P GM+R+NIAR++ ++ +
Sbjct:   92 NNLPYAERLEYGWSKQAPTGMIRVNIARFNTLLTE 126          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A0K2FIJ9_9CAUD (Uncharacterized protein n=2 Tax=Viruses TaxID=10239 RepID=A0A0K2FIJ9_9CAUD)

HSP 1 Score: 53.9 bits (128), Expect = 6.750e-8
Identity = 19/33 (57.58%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIV 99
            N++PY  RLEYGWS+Q+P GM+R+NIAR+  ++
Sbjct:   92 NNLPYAERLEYGWSKQAPVGMVRVNIARFQQLI 124          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A291AX54_9CAUD (Uncharacterized protein n=1 Tax=Salmonella phage St161 TaxID=2024311 RepID=A0A291AX54_9CAUD)

HSP 1 Score: 51.2 bits (121), Expect = 7.500e-7
Identity = 18/33 (54.55%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIV 99
            N++PY  RLEYGWS+Q+P G++R+NIAR++ ++
Sbjct:   92 NNLPYAERLEYGWSKQAPQGIVRVNIARFNTLL 124          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A2I7RB56_9CAUD (Coil containing protein n=1 Tax=Vibrio phage 1.151.O._10N.222.46.B1 TaxID=1881430 RepID=A0A2I7RB56_9CAUD)

HSP 1 Score: 50.8 bits (120), Expect = 8.810e-7
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQGVR 114
            N VPYI  LEYG S+Q+PAGM+R+++ +WD IV +  R
Sbjct:   82 NIVPYILALEYGHSKQAPAGMVRLSVNQWDRIVKKATR 119          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A542LGC8_9BURK (Uncharacterized protein n=1 Tax=Herbaspirillum sp. SJZ107 TaxID=2572881 RepID=A0A542LGC8_9BURK)

HSP 1 Score: 50.4 bits (119), Expect = 2.400e-6
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDI---VAQGVRA 117
            N+VPY +RLE GWSRQ+P G++ I +  W++I   V  GV+A
Sbjct:  106 NTVPYAKRLEQGWSRQAPVGVVAITVVEWNNIIENVVNGVKA 147          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: UPI0004622E02 (hypothetical protein n=3 Tax=Pseudomonas TaxID=286 RepID=UPI0004622E02)

HSP 1 Score: 49.3 bits (116), Expect = 4.100e-6
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIV 99
            NS+PYI RLEYG+S+Q+P+GM+R NIAR   IV
Sbjct:   90 NSLPYIDRLEYGYSQQAPSGMVRRNIARVQRIV 122          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A0A1IUN5_9CAUD (Uncharacterized protein n=3 Tax=Abidjanvirus TaxID=1982095 RepID=A0A0A1IUN5_9CAUD)

HSP 1 Score: 48.5 bits (114), Expect = 8.280e-6
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    1 NSVPYIRRLEY-GWSR-QSPAGMLRINIARWDDIVA 102
            N++PY  R+E+ GWSR ++P GM+R N+ARWD+IVA
Sbjct:   89 NNLPYAHRIEFDGWSRYKAPQGMVRKNVARWDEIVA 124          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: B9TMR4_RICCO (Uncharacterized protein n=1 Tax=Ricinus communis TaxID=3988 RepID=B9TMR4_RICCO)

HSP 1 Score: 47.4 bits (111), Expect = 1.190e-5
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIV 99
            NS+PY +RLEYGWS+Q+P GM+R+ +  +   +
Sbjct:   54 NSLPYAKRLEYGWSKQAPGGMVRLAVQNYSQTI 86          
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A857J820_9BURK (HK97 gp10 family phage protein n=1 Tax=Xylophilus rhododendri TaxID=2697032 RepID=A0A857J820_9BURK)

HSP 1 Score: 47.8 bits (112), Expect = 1.560e-5
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 1
Query:    1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQGV 111
            NS+PY +RLEYGWS+Q+PAGM+R   A +   + + +
Sbjct:   91 NSLPYAQRLEYGWSKQAPAGMVRTTTAEYGTYLRKAI 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A431IPZ5_9ACTN1.980e-957.89HK97 gp10 family phage protein n=1 Tax=Acidimicrob... [more]
A0A291AX91_9CAUD4.780e-854.29Putative tail protein n=12 Tax=root TaxID=1 RepID=... [more]
A0A0K2FIJ9_9CAUD6.750e-857.58Uncharacterized protein n=2 Tax=Viruses TaxID=1023... [more]
A0A291AX54_9CAUD7.500e-754.55Uncharacterized protein n=1 Tax=Salmonella phage S... [more]
A0A2I7RB56_9CAUD8.810e-755.26Coil containing protein n=1 Tax=Vibrio phage 1.151... [more]
A0A542LGC8_9BURK2.400e-650.00Uncharacterized protein n=1 Tax=Herbaspirillum sp.... [more]
UPI0004622E024.100e-666.67hypothetical protein n=3 Tax=Pseudomonas TaxID=286... [more]
A0A0A1IUN5_9CAUD8.280e-658.33Uncharacterized protein n=3 Tax=Abidjanvirus TaxID... [more]
B9TMR4_RICCO1.190e-548.48Uncharacterized protein n=1 Tax=Ricinus communis T... [more]
A0A857J820_9BURK1.560e-548.65HK97 gp10 family phage protein n=1 Tax=Xylophilus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99738contigP-canaliculata_contig99738:1..132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.673916-CDS-P-canaliculata_contig99738:0..1321622817356.673916-CDS-P-canaliculata_contig99738:0..132Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99738 1..132 +
1693495244.4437695-CDS-P-canaliculata_contig99738:0..1321693495244.4437695-CDS-P-canaliculata_contig99738:0..132Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99738 1..132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99738.24089.1prot_P-canaliculata_contig99738.24089.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99738 1..132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99738.24089.1

>prot_P-canaliculata_contig99738.24089.1 ID=prot_P-canaliculata_contig99738.24089.1|Name=mRNA_P-canaliculata_contig99738.24089.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=44bp
NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQGVRAAGGS*
back to top

mRNA from alignment at P-canaliculata_contig99738:1..132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99738.24089.1 ID=mRNA_P-canaliculata_contig99738.24089.1|Name=mRNA_P-canaliculata_contig99738.24089.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at P-canaliculata_contig99738:1..132+ (Pelvetia canaliculata dioecious)
AATAGCGTGCCGTACATACGCCGCTTGGAATATGGCTGGTCCCGACAATC GCCTGCCGGGATGCTCCGAATTAACATCGCACGATGGGATGACATTGTTG CACAAGGGGTAAGGGCCGCAGGTGGAAGCTGA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig99738:1..132+

>mRNA_P-canaliculata_contig99738.24089.1 ID=mRNA_P-canaliculata_contig99738.24089.1|Name=mRNA_P-canaliculata_contig99738.24089.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at P-canaliculata_contig99738:1..132+ (Pelvetia canaliculata dioecious)
AATAGCGTGCCGTACATACGCCGCTTGGAATATGGCTGGTCCCGACAATC
GCCTGCCGGGATGCTCCGAATTAACATCGCACGATGGGATGACATTGTTG
CACAAGGGGTAAGGGCCGCAGGTGGAAGCTGAAATAGCGTGCCGTACATA
CGCCGCTTGGAATATGGCTGGTCCCGACAATCGCCTGCCGGGATGCTCCG
AATTAACATCGCACGATGGGATGACATTGTTGCACAAGGGGTAAGGGCCG
CAGGTGGAAGCTGA
back to top