mRNA_P-canaliculata_contig99600.24075.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99600.24075.1
Unique NamemRNA_P-canaliculata_contig99600.24075.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99600.24075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99600contigP-canaliculata_contig99600:323..871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size549
Cds size549
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.5090988-CDS-P-canaliculata_contig99600:322..8711622817355.5090988-CDS-P-canaliculata_contig99600:322..871Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99600 323..871 +
1693495243.5811093-CDS-P-canaliculata_contig99600:322..8711693495243.5811093-CDS-P-canaliculata_contig99600:322..871Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99600 323..871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99600.24075.1prot_P-canaliculata_contig99600.24075.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99600 323..871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99600.24075.1

>prot_P-canaliculata_contig99600.24075.1 ID=prot_P-canaliculata_contig99600.24075.1|Name=mRNA_P-canaliculata_contig99600.24075.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=183bp
MRGIEHAVMLAAVSILLSGGTAHAKDLSGRIGVGALQTVGGVSGISARFQ
ATPKIGVQTVVNLGVASPDGEDFGYGVGLGLRGLYSIIDAGDFNGSVGLG
VDFAYQNFGGSLMQFGFHVPVRMEYFFTNWFALNLEMGLRFNIVGDDGQL
LNAPGNGLLAGKGFGVDLNHTLFGGGGFSFYF*
back to top

mRNA from alignment at P-canaliculata_contig99600:323..871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99600.24075.1 ID=mRNA_P-canaliculata_contig99600.24075.1|Name=mRNA_P-canaliculata_contig99600.24075.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at P-canaliculata_contig99600:323..871+ (Pelvetia canaliculata dioecious)
ATGCGAGGAATAGAACACGCTGTCATGCTAGCGGCGGTGAGCATTTTGCT
TTCGGGCGGAACGGCTCATGCCAAGGACCTGAGTGGACGCATTGGCGTCG
GAGCTCTACAAACCGTTGGAGGCGTATCTGGTATCTCAGCACGTTTTCAA
GCGACACCGAAAATCGGTGTGCAAACCGTCGTGAATCTAGGAGTTGCCAG
TCCTGATGGAGAAGACTTCGGCTACGGTGTCGGCCTTGGTCTACGCGGCC
TCTACTCCATAATTGACGCTGGAGACTTTAACGGCAGTGTTGGCCTCGGT
GTTGATTTTGCCTACCAAAACTTTGGCGGAAGCCTAATGCAGTTCGGTTT
TCACGTCCCAGTGCGGATGGAGTACTTCTTCACAAACTGGTTTGCTTTGA
ATCTCGAAATGGGTCTTCGTTTTAATATCGTGGGCGATGACGGGCAGTTA
CTAAATGCACCTGGCAATGGCCTGTTGGCCGGCAAGGGCTTTGGCGTAGA
CCTTAACCACACACTCTTTGGTGGTGGCGGATTTTCTTTCTACTTCTAG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig99600:323..871+

>mRNA_P-canaliculata_contig99600.24075.1 ID=mRNA_P-canaliculata_contig99600.24075.1|Name=mRNA_P-canaliculata_contig99600.24075.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at P-canaliculata_contig99600:323..871+ (Pelvetia canaliculata dioecious)
ATGCGAGGAATAGAACACGCTGTCATGCTAGCGGCGGTGAGCATTTTGCT
TTCGGGCGGAACGGCTCATGCCAAGGACCTGAGTGGACGCATTGGCGTCG
GAGCTCTACAAACCGTTGGAGGCGTATCTGGTATCTCAGCACGTTTTCAA
GCGACACCGAAAATCGGTGTGCAAACCGTCGTGAATCTAGGAGTTGCCAG
TCCTGATGGAGAAGACTTCGGCTACGGTGTCGGCCTTGGTCTACGCGGCC
TCTACTCCATAATTGACGCTGGAGACTTTAACGGCAGTGTTGGCCTCGGT
GTTGATTTTGCCTACCAAAACTTTGGCGGAAGCCTAATGCAGTTCGGTTT
TCACGTCCCAGTGCGGATGGAGTACTTCTTCACAAACTGGTTTGCTTTGA
ATCTCGAAATGGGTCTTCGTTTTAATATCGTGGGCGATGACGGGCAGTTA
CTAAATGCACCTGGCAATGGCCTGTTGGCCGGCAAGGGCTTTGGCGTAGA
CCTTAACCACACACTCTTTGGTGGTGGCGGATTTTCTTTCTACTTCTAGA
TGCGAGGAATAGAACACGCTGTCATGCTAGCGGCGGTGAGCATTTTGCTT
TCGGGCGGAACGGCTCATGCCAAGGACCTGAGTGGACGCATTGGCGTCGG
AGCTCTACAAACCGTTGGAGGCGTATCTGGTATCTCAGCACGTTTTCAAG
CGACACCGAAAATCGGTGTGCAAACCGTCGTGAATCTAGGAGTTGCCAGT
CCTGATGGAGAAGACTTCGGCTACGGTGTCGGCCTTGGTCTACGCGGCCT
CTACTCCATAATTGACGCTGGAGACTTTAACGGCAGTGTTGGCCTCGGTG
TTGATTTTGCCTACCAAAACTTTGGCGGAAGCCTAATGCAGTTCGGTTTT
CACGTCCCAGTGCGGATGGAGTACTTCTTCACAAACTGGTTTGCTTTGAA
TCTCGAAATGGGTCTTCGTTTTAATATCGTGGGCGATGACGGGCAGTTAC
TAAATGCACCTGGCAATGGCCTGTTGGCCGGCAAGGGCTTTGGCGTAGAC
CTTAACCACACACTCTTTGGTGGTGGCGGATTTTCTTTCTACTTCTAG
back to top