mRNA_P-canaliculata_contig99515.24061.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99515.24061.1
Unique NamemRNA_P-canaliculata_contig99515.24061.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99515.24061.1 vs. uniprot
Match: A0A5C0E433_9PROT (DUF4365 domain-containing protein n=1 Tax=Aliarcobacter cryaerophilus TaxID=28198 RepID=A0A5C0E433_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 4.200e-11
Identity = 58/245 (23.67%), Postives = 116/245 (47.35%), Query Frame = 1 
Query:   31 SKKLNAVAASYHYSAANVIRTYRDESKRSCVRHYRKAVELDPEYLQKPYWWQEMGSAFFQIHRYKASVGCYSKAISLGMADETLALRADALLHAGLYSKAADGF-EIYLRHKEKLTQEAGGSEFTPGLGGWYLKSWCINTVIENLEITERPSITRSLTYTGALDDIGAMINHLKMYGIWQKNI-------WFNVAIALGKSGDLEGSLVGFVMEAMINPSDMEAQGNALSLAMNTQNAFVMGHLM 741
            ++K++   A Y+Y  AN +R    +  +     Y KA++ +  Y  + Y ++EM    + + R++ S  CY K + L     ++ L ADAL+  G Y ++ + F E + + KE +  E            W+LK   +  ++++L+I E+    +    T  + +        + Y     NI        FN+AI+     +  G++V F++ A++N  D E+  N++  A+N Q+  V+ +++
Sbjct:  349 NEKMHLGIAYYNY--ANFLRM---KDLKKSFHFYNKALKYNTHYCTEDYIFKEMAGLLWDLDRFEMSAKCYKKGLELKEDLNSIVLYADALMFQGKYLESKNKFIEYFEKKKEDIHPE------------WHLKESILGIIVDDLKIKEQKRNYKKAMNTKTIKNCNGQKIPDEEYEFIIDNIDALNPLCHFNLAISCSNEDEHFGTMVHFLISALVNRKDKESWLNSIKGALNCQSYNVIPNMI 576
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BLAST of mRNA_P-canaliculata_contig99515.24061.1 vs. uniprot
Match: X1KIJ1_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1KIJ1_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 5.180e-5
Identity = 23/70 (32.86%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:   43 NAVAASYHYSAANVIRTYRDESKRSCVRHYRKAVELDPEYLQKPYWWQEMGSAFFQIHRYKASVGCYSKA 252
            N + A + Y+ AN  R+    + R  +++Y +A  L+P+YL + YWW E+    F +  Y  +  CY KA
Sbjct:   87 NILKAVFSYNLANSYRS--SHNVRKAIKYYMQAKRLEPDYLNRDYWWYELAGVLFMVKHYGWAESCYLKA 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99515.24061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5C0E433_9PROT4.200e-1123.67DUF4365 domain-containing protein n=1 Tax=Aliarcob... [more]
X1KIJ1_9ZZZZ5.180e-532.86Uncharacterized protein n=1 Tax=marine sediment me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99515contigP-canaliculata_contig99515:280..1044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue7.9e-07
Seed eggNOG ortholog1218108.KB908302_gene2783
EggNOG free text desc.Domain of unknown function (DUF4365)
EggNOG OGs1I3G5@117743,4NKSS@976,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size765
Cds size762
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.501883-UTR-P-canaliculata_contig99515:279..2821622817354.501883-UTR-P-canaliculata_contig99515:279..282Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99515 280..282 +
1693495242.875545-UTR-P-canaliculata_contig99515:279..2821693495242.875545-UTR-P-canaliculata_contig99515:279..282Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99515 280..282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.5159082-CDS-P-canaliculata_contig99515:282..10441622817354.5159082-CDS-P-canaliculata_contig99515:282..1044Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99515 283..1044 +
1693495242.888409-CDS-P-canaliculata_contig99515:282..10441693495242.888409-CDS-P-canaliculata_contig99515:282..1044Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99515 283..1044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99515.24061.1prot_P-canaliculata_contig99515.24061.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99515 283..1044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99515.24061.1

>prot_P-canaliculata_contig99515.24061.1 ID=prot_P-canaliculata_contig99515.24061.1|Name=mRNA_P-canaliculata_contig99515.24061.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=254bp
MLRLADEFESKKLNAVAASYHYSAANVIRTYRDESKRSCVRHYRKAVELD
PEYLQKPYWWQEMGSAFFQIHRYKASVGCYSKAISLGMADETLALRADAL
LHAGLYSKAADGFEIYLRHKEKLTQEAGGSEFTPGLGGWYLKSWCINTVI
ENLEITERPSITRSLTYTGALDDIGAMINHLKMYGIWQKNIWFNVAIALG
KSGDLEGSLVGFVMEAMINPSDMEAQGNALSLAMNTQNAFVMGHLMDEVP
FRHG
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mRNA from alignment at P-canaliculata_contig99515:280..1044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99515.24061.1 ID=mRNA_P-canaliculata_contig99515.24061.1|Name=mRNA_P-canaliculata_contig99515.24061.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=765bp|location=Sequence derived from alignment at P-canaliculata_contig99515:280..1044+ (Pelvetia canaliculata dioecious)
CTCATGCTCCGTCTTGCGGATGAGTTTGAATCTAAAAAATTAAATGCGGT
TGCGGCGTCATACCACTATTCTGCAGCTAACGTAATTAGAACCTACCGTG
ATGAAAGCAAACGCAGTTGCGTTCGACATTATCGTAAAGCTGTTGAACTA
GATCCTGAGTATTTGCAGAAGCCGTACTGGTGGCAAGAGATGGGTTCCGC
TTTCTTTCAAATACACAGATACAAGGCCTCGGTAGGTTGTTACAGCAAAG
CTATATCTTTAGGCATGGCTGACGAGACTCTAGCATTGAGGGCCGATGCA
TTACTTCATGCTGGGCTATACAGCAAGGCTGCTGATGGTTTCGAAATCTA
CTTGCGACATAAGGAAAAGCTGACGCAGGAAGCAGGAGGCAGCGAATTTA
CACCAGGATTAGGTGGCTGGTATCTAAAGAGCTGGTGCATAAACACTGTC
ATTGAAAACCTAGAAATTACAGAGAGACCATCAATCACCAGATCATTAAC
TTACACTGGTGCGCTGGATGACATAGGTGCCATGATTAATCATTTAAAGA
TGTATGGCATATGGCAAAAAAATATATGGTTTAACGTAGCGATCGCTTTG
GGCAAGAGTGGGGATTTAGAAGGGTCTCTAGTTGGTTTTGTAATGGAAGC
TATGATCAATCCTAGCGACATGGAAGCTCAGGGAAACGCATTGAGTTTGG
CAATGAATACTCAGAACGCTTTCGTTATGGGTCACCTAATGGACGAAGTA
CCATTCCGACACGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig99515:280..1044+

>mRNA_P-canaliculata_contig99515.24061.1 ID=mRNA_P-canaliculata_contig99515.24061.1|Name=mRNA_P-canaliculata_contig99515.24061.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at P-canaliculata_contig99515:280..1044+ (Pelvetia canaliculata dioecious)
ATGCTCCGTCTTGCGGATGAGTTTGAATCTAAAAAATTAAATGCGGTTGC
GGCGTCATACCACTATTCTGCAGCTAACGTAATTAGAACCTACCGTGATG
AAAGCAAACGCAGTTGCGTTCGACATTATCGTAAAGCTGTTGAACTAGAT
CCTGAGTATTTGCAGAAGCCGTACTGGTGGCAAGAGATGGGTTCCGCTTT
CTTTCAAATACACAGATACAAGGCCTCGGTAGGTTGTTACAGCAAAGCTA
TATCTTTAGGCATGGCTGACGAGACTCTAGCATTGAGGGCCGATGCATTA
CTTCATGCTGGGCTATACAGCAAGGCTGCTGATGGTTTCGAAATCTACTT
GCGACATAAGGAAAAGCTGACGCAGGAAGCAGGAGGCAGCGAATTTACAC
CAGGATTAGGTGGCTGGTATCTAAAGAGCTGGTGCATAAACACTGTCATT
GAAAACCTAGAAATTACAGAGAGACCATCAATCACCAGATCATTAACTTA
CACTGGTGCGCTGGATGACATAGGTGCCATGATTAATCATTTAAAGATGT
ATGGCATATGGCAAAAAAATATATGGTTTAACGTAGCGATCGCTTTGGGC
AAGAGTGGGGATTTAGAAGGGTCTCTAGTTGGTTTTGTAATGGAAGCTAT
GATCAATCCTAGCGACATGGAAGCTCAGGGAAACGCATTGAGTTTGGCAA
TGAATACTCAGAACGCTTTCGTTATGGGTCACCTAATGGACGAAGTACCA
TTCCGACACGGGATGCTCCGTCTTGCGGATGAGTTTGAATCTAAAAAATT
AAATGCGGTTGCGGCGTCATACCACTATTCTGCAGCTAACGTAATTAGAA
CCTACCGTGATGAAAGCAAACGCAGTTGCGTTCGACATTATCGTAAAGCT
GTTGAACTAGATCCTGAGTATTTGCAGAAGCCGTACTGGTGGCAAGAGAT
GGGTTCCGCTTTCTTTCAAATACACAGATACAAGGCCTCGGTAGGTTGTT
ACAGCAAAGCTATATCTTTAGGCATGGCTGACGAGACTCTAGCATTGAGG
GCCGATGCATTACTTCATGCTGGGCTATACAGCAAGGCTGCTGATGGTTT
CGAAATCTACTTGCGACATAAGGAAAAGCTGACGCAGGAAGCAGGAGGCA
GCGAATTTACACCAGGATTAGGTGGCTGGTATCTAAAGAGCTGGTGCATA
AACACTGTCATTGAAAACCTAGAAATTACAGAGAGACCATCAATCACCAG
ATCATTAACTTACACTGGTGCGCTGGATGACATAGGTGCCATGATTAATC
ATTTAAAGATGTATGGCATATGGCAAAAAAATATATGGTTTAACGTAGCG
ATCGCTTTGGGCAAGAGTGGGGATTTAGAAGGGTCTCTAGTTGGTTTTGT
AATGGAAGCTATGATCAATCCTAGCGACATGGAAGCTCAGGGAAACGCAT
TGAGTTTGGCAATGAATACTCAGAACGCTTTCGTTATGGGTCACCTAATG
GACGAAGTACCATTCCGACACGGG
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