prot_P-canaliculata_contig99183.24034.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig99183.24034.1
Unique Nameprot_P-canaliculata_contig99183.24034.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length204
Homology
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BLAST of mRNA_P-canaliculata_contig99183.24034.1 vs. uniprot
Match: A0A5C6B0A3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6B0A3_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 1.900e-19
Identity = 56/173 (32.37%), Postives = 93/173 (53.76%), Query Frame = 0 
Query:   24 SGIDYTEDSPTSGRVTAGMFVLGMPILLGFGFLVSTCIAYIARRMGAWVAWPLTAMVFAMLIYLSAVSSSPWNRLADVLNVDLQ-NVRICRLKQMDSFGDGITTLALIDGDDELFDRICLANGLRKTSDLTPSFFNWLYEDKTPFLEPVTVFENDRLTCYNDAANNRLFIYHR 195
            S +D++      GR TAG FVLG+P+L+    L +   + +ARR    +AW    ++F  L++ +   S+P  RL   L+V++  +V+I RL++ DSF DGITT+     D E  + +   + L  + D+T  + +    D    ++ V  + NDRLTCY+D+    L+   R
Sbjct:    2 SSMDFSTALAGDGRKTAGWFVLGLPMLVPIAMLSTMPFSMVARRGRRAIAWLAMCVLFGALMWFAYSQSTPLARLEWALDVEIPTDVKIIRLRETDSFNDGITTVGACIADREFINDLVAHHSL--SEDITGGYISPYLPDANISVDGVG-YRNDRLTCYHDSKTKTLYFVRR 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99183.24034.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5C6B0A3_9BACT1.900e-1932.37Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..65
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 66..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..203
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..89
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..19
score: 0.55
NoneNo IPR availableTMHMMTMhelixcoord: 71..90
NoneNo IPR availableTMHMMTMhelixcoord: 42..64
NoneNo IPR availableTMHMMTMhelixcoord: 5..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99183contigP-canaliculata_contig99183:328..939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99183.24034.1mRNA_P-canaliculata_contig99183.24034.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig99183 328..939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig99183.24034.1 ID=prot_P-canaliculata_contig99183.24034.1|Name=mRNA_P-canaliculata_contig99183.24034.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=204bp
LLRPFSLFATSMICFLVWAWFSTSGIDYTEDSPTSGRVTAGMFVLGMPIL
LGFGFLVSTCIAYIARRMGAWVAWPLTAMVFAMLIYLSAVSSSPWNRLAD
VLNVDLQNVRICRLKQMDSFGDGITTLALIDGDDELFDRICLANGLRKTS
DLTPSFFNWLYEDKTPFLEPVTVFENDRLTCYNDAANNRLFIYHRSRSYP
GED*
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