mRNA_P-canaliculata_contig99181.24033.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99181.24033.1
Unique NamemRNA_P-canaliculata_contig99181.24033.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99181.24033.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.010e-17
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   19 WRESYGIDTILDEDLSDFDLSKVFFWCGFDRGGRPCLVYRVCEHIKPDSKKERPTAENKV 198
            WR +Y +DTILDEDLS   +S  F+W GFDR GRPCLV+R CEH K DS    PT E KV
Sbjct:   79 WRTTYKLDTILDEDLSGTGVSHEFYWSGFDRDGRPCLVFRACEHRKSDSDGGSPTVEEKV 138
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BLAST of mRNA_P-canaliculata_contig99181.24033.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.510e-17
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   19 WRESYGIDTILDEDLSDFDLSKVFFWCGFDRGGRPCLVYRVCEHIKPDSKKERPTAENKV 198
            WR +Y +DTILDEDLS   +S  F+W GFDR GRPCLV+R CEH K DS    PT E K+
Sbjct:   79 WRITYKLDTILDEDLSGTGVSHEFYWSGFDRDGRPCLVFRACEHRKSDSDGASPTVEEKL 138
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BLAST of mRNA_P-canaliculata_contig99181.24033.1 vs. uniprot
Match: A0A7S2GJ01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJ01_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.810e-7
Identity = 19/44 (43.18%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:   19 WRESYGIDTILDEDLSDFDLSKVFFWCGFDRGGRPCLVYRVCEH 150
            WR+++G++ +L ED SD DL +  +W GFD  G P LV     H
Sbjct:   60 WRDTFGLEQLLQEDFSDMDLRREVYWEGFDLAGHPVLVINAARH 103
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BLAST of mRNA_P-canaliculata_contig99181.24033.1 vs. uniprot
Match: A0A7S4P273_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P273_GUITH)

HSP 1 Score: 48.1 bits (113), Expect = 9.740e-5
Identity = 20/58 (34.48%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:   19 WRESYGIDTILDEDLSDFDLSKVFFWCGFDRGGRPCLVYRVCEH------IKPDSKKE 174
            WR+ Y +DTI++ED S++D     + CG D+ GRP   +    H      + P+S  E
Sbjct:  130 WRQEYKVDTIMEEDWSEYDKRGEMYPCGLDKDGRPTWTWHTQRHGRTINSVPPNSSPE 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99181.24033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK06_ECTSI1.010e-1761.67CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAS6_9PHAE3.510e-1760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GJ01_9STRA2.810e-743.18Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4P273_GUITH9.740e-534.48Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99181contigP-canaliculata_contig99181:152..355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D7FK06
KEGG koko:K15335,ko:K19625
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
EC2.1.1.203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-18_002930.1
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.6309001-CDS-P-canaliculata_contig99181:151..3551622817352.6309001-CDS-P-canaliculata_contig99181:151..355Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99181 152..355 -
1693495241.6710896-CDS-P-canaliculata_contig99181:151..3551693495241.6710896-CDS-P-canaliculata_contig99181:151..355Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99181 152..355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99181.24033.1prot_P-canaliculata_contig99181.24033.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99181 152..355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99181.24033.1

>prot_P-canaliculata_contig99181.24033.1 ID=prot_P-canaliculata_contig99181.24033.1|Name=mRNA_P-canaliculata_contig99181.24033.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=68bp
LGRQKIWRESYGIDTILDEDLSDFDLSKVFFWCGFDRGGRPCLVYRVCEH
IKPDSKKERPTAENKVG*
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mRNA from alignment at P-canaliculata_contig99181:152..355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99181.24033.1 ID=mRNA_P-canaliculata_contig99181.24033.1|Name=mRNA_P-canaliculata_contig99181.24033.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at P-canaliculata_contig99181:152..355- (Pelvetia canaliculata dioecious)
CTTGGACGTCAAAAGATCTGGCGGGAGTCGTACGGGATCGACACCATCTT
GGACGAAGATCTGTCCGATTTCGATCTGAGTAAGGTGTTCTTCTGGTGCG
GCTTCGACCGCGGCGGGAGACCCTGCCTGGTGTACCGCGTTTGCGAGCAC
ATCAAGCCGGACTCGAAGAAAGAGAGACCTACGGCGGAGAACAAGGTTGG
TTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99181:152..355-

>mRNA_P-canaliculata_contig99181.24033.1 ID=mRNA_P-canaliculata_contig99181.24033.1|Name=mRNA_P-canaliculata_contig99181.24033.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at P-canaliculata_contig99181:152..355- (Pelvetia canaliculata dioecious)
CTTGGACGTCAAAAGATCTGGCGGGAGTCGTACGGGATCGACACCATCTT
GGACGAAGATCTGTCCGATTTCGATCTGAGTAAGGTGTTCTTCTGGTGCG
GCTTCGACCGCGGCGGGAGACCCTGCCTGGTGTACCGCGTTTGCGAGCAC
ATCAAGCCGGACTCGAAGAAAGAGAGACCTACGGCGGAGAACAAGGTTGG
TTGACTTGGACGTCAAAAGATCTGGCGGGAGTCGTACGGGATCGACACCA
TCTTGGACGAAGATCTGTCCGATTTCGATCTGAGTAAGGTGTTCTTCTGG
TGCGGCTTCGACCGCGGCGGGAGACCCTGCCTGGTGTACCGCGTTTGCGA
GCACATCAAGCCGGACTCGAAGAAAGAGAGACCTACGGCGGAGAACAAGG
TTGGTTGA
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