mRNA_P-canaliculata_contig98949.24009.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98949.24009.1
Unique NamemRNA_P-canaliculata_contig98949.24009.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: UPI0019C03526 (Type II secretion system protein GspD n=2 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0019C03526)

HSP 1 Score: 402 bits (1032), Expect = 1.170e-134
Identity = 207/243 (85.19%), Postives = 228/243 (93.83%), Query Frame = 1
Query:    1 LSDATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEILNP 729
            LS+ T+S+FETAA+SSIAG+DGG+FGVGGNS DTLFGLI+NALETD DSNILSTPFVTTLDNVPATFLVGQEIPIT GESLG  N+NPFRTFERQEVGIQLDVLPQIS+GDV+RLEIEQIVSSISGVLT+ AGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQV VAKVP+LGDIP+AGKLF+S+G+TRNKTNLMVFLRPTIIR+AADARPLT +RLNQ R  D+NQ+GR VSKID +L P
Sbjct:  387 LSETTRSAFETAAVSSIAGIDGGSFGVGGNSGDTLFGLIINALETDEDSNILSTPFVTTLDNVPATFLVGQEIPITTGESLGGTNINPFRTFERQEVGIQLDVLPQISDGDVVRLEIEQIVSSISGVLTSAAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVNVAKVPILGDIPVAGKLFQSKGRTRNKTNLMVFLRPTIIRNAADARPLTQERLNQIRIEDLNQSGRTVSKIDNLLAP 629          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A8J3CS24_9PROT (Type II secretion system protein GspD n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CS24_9PROT)

HSP 1 Score: 330 bits (846), Expect = 1.190e-106
Identity = 168/226 (74.34%), Postives = 191/226 (84.51%), Query Frame = 1
Query:   55 GLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEILNPP 732
            GL GG  G+GG S D LFG I+NA+ETD DSN+LSTPFVTTLDN  ATFLVGQEIPIT GE+LG+ N+NPFRTFER+EVGIQLDV PQIS+GDVIRLEI Q VSSI+GVLT+ AGDFV NKR+I TTVLANDGEIIVLGGL+QDDEQ+ + KVP  GD+P+ G+ FRSEGKTR KTNLMVFLRPTIIR+A DARPLT  RLN+ R  D+NQ+GR  SKID+IL  P
Sbjct:  395 GLGGGTLGIGGQSGDVLFGAILNAVETDDDSNVLSTPFVTTLDNQSATFLVGQEIPITTGETLGSSNLNPFRTFERKEVGIQLDVTPQISDGDVIRLEISQEVSSIAGVLTSAAGDFVTNKRQIETTVLANDGEIIVLGGLLQDDEQIDIEKVPFFGDLPLIGRAFRSEGKTRTKTNLMVFLRPTIIRNAEDARPLTQSRLNRMRLEDMNQSGRTTSKIDDILIEP 620          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: UPI0004091F02 (hypothetical protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0004091F02)

HSP 1 Score: 326 bits (835), Expect = 6.210e-105
Identity = 168/230 (73.04%), Postives = 200/230 (86.96%), Query Frame = 1
Query:   40 ISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLG--TDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723
            ++S+ GLDGG  G+ G SNDTL+ ++VNALETD DSNILSTPFVTTLDNVPATFLVGQEIPIT GESLG  T NVNPFRTFER+EVGI+L+VLPQISEGDVIRLEI+Q VSSI+G L++ + DFV NKREI TTVLANDGEIIVLGGL+QDDEQ+ +AKVP+LGDIP+ G+ F+S+GK+R KTNLMVFLRP IIR+A+DARPLT D LN++R  D+ Q+GR  SKID+ +
Sbjct:  397 VNSLVGLDGGIGGISGVSNDTLYSVVVNALETDEDSNILSTPFVTTLDNVPATFLVGQEIPITTGESLGLGTTNVNPFRTFEREEVGIKLEVLPQISEGDVIRLEIKQEVSSIAGALSSLSSDFVTNKREIETTVLANDGEIIVLGGLLQDDEQIDLAKVPILGDIPVIGRAFQSKGKSRKKTNLMVFLRPKIIRTASDARPLTQDLLNRARFEDMQQSGRPSSKIDDYV 626          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A420WMB2_9PROT (Type II secretion system protein D (GspD) n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WMB2_9PROT)

HSP 1 Score: 320 bits (820), Expect = 1.120e-102
Identity = 167/241 (69.29%), Postives = 200/241 (82.99%), Query Frame = 1
Query:    1 LSDATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723
            L + TQ+S + AAISSI GL GG  G+GG   D++F  IVNALE D +SNILSTPFVTTLDNVPATFLVGQEIPIT GESLG   VNPFRTF+R EVGI+L+VLPQISEGDV+RLEI Q VSSI+G +T+ + DFV NKREI TTVLAN+ EIIVLGGLVQDDEQ+T+ KVP+LGD P+ G+LFR++ K+R KTNL+VF+RPTIIR+  DARPLT +RL+Q R  DI+Q+GR  SK+DEI+
Sbjct:  389 LDETTQTSLQAAAISSITGLTGGTIGIGGVEGDSVFSAIVNALEKDENSNILSTPFVTTLDNVPATFLVGQEIPITTGESLGATTVNPFRTFDRIEVGIKLNVLPQISEGDVVRLEIAQEVSSIAGAITSLSQDFVTNKREIETTVLANNKEIIVLGGLVQDDEQITIEKVPVLGDAPLIGELFRNKDKSRVKTNLVVFIRPTIIRNGEDARPLTQERLDQIRREDISQSGRTYSKLDEII 629          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: UPI0003A88D91 (type II secretion system secretin GspD n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0003A88D91)

HSP 1 Score: 313 bits (801), Expect = 4.320e-100
Identity = 159/239 (66.53%), Postives = 194/239 (81.17%), Query Frame = 1
Query:    7 DATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723
            DA   +   AA+SS+ GL+GG  G  G S +TLF +I+NA+ETD +SN+LSTPFVTT+DNVPATFLVGQEIPIT GESLG +NVNPFRTFERQEVGI+L+VLPQISEGDVIRL I Q VSSI+G +T ++ DF+LNKREITTTVLANDGE+IVLGGL+QDDE++ + KVP LGD PI G+LF+S GK R +TNLMVFLRPTIIRSA DARP+T +R+   R  +I  +    SK+D ++
Sbjct:  378 DAANPNIPAAALSSLFGLEGGILGGAGISGNTLFSVILNAVETDDNSNVLSTPFVTTVDNVPATFLVGQEIPITTGESLGANNVNPFRTFERQEVGIKLEVLPQISEGDVIRLTIAQEVSSINGAVTGSSADFILNKREITTTVLANDGEVIVLGGLIQDDEEINIDKVPGLGDAPIIGRLFQSRGKARTRTNLMVFLRPTIIRSAEDARPITRERMEYMRRYEIENSEDGTSKLDRVM 616          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A2G2J4D0_9PROT (Type II secretion system protein GspD n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J4D0_9PROT)

HSP 1 Score: 285 bits (730), Expect = 3.920e-89
Identity = 147/236 (62.29%), Postives = 180/236 (76.27%), Query Frame = 1
Query:   16 QSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723
            Q   + AAISS+ GL GG FG+GG  +  LFG ++NA+  DT+SN+LSTPFVTTLDNVPATFLVGQEIP+T GE+LGT+N NPFRT  R+E+GI+L+VLPQI+EGDVIRLEI Q VSSIS   +      V NKREI+TTVLANDGE+IVLGGL+QDDEQ+  +KVP LGDIP+ G LF+S   TR +TNLMVF+RPTIIRS  D  PLT  +L+  R  +  +TG   S++D  L
Sbjct:  403 QGDLQNAAISSLLGLQGGTFGIGGYGSSGLFGAVLNAVSNDTNSNVLSTPFVTTLDNVPATFLVGQEIPVTSGEALGTNNSNPFRTITREEIGIKLEVLPQINEGDVIRLEIRQEVSSISADASVLVSGLVTNKREISTTVLANDGEVIVLGGLMQDDEQLFTSKVPFLGDIPVIGNLFKSHNNTRKRTNLMVFIRPTIIRSREDMMPLTQQKLDIMRRQERRKTGGTSSRLDGAL 638          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A2G2GIX6_9PROT (Type II secretion system protein GspD n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GIX6_9PROT)

HSP 1 Score: 274 bits (701), Expect = 7.270e-85
Identity = 142/239 (59.41%), Postives = 182/239 (76.15%), Query Frame = 1
Query:    7 DATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723
            DA   S + AAISS+ GL GG  G+GG+ +  +FG+++NA++ D DSN+LSTPFVTTLDNV ATFLVGQE+P T GE+LGT N NPFRT  R+E+GI+L+VLPQI EG V+RLEI+Q VSSIS   TA A   V NKREI TTVLANDGEIIVLGGL+QDDEQ++  +VPLLG +P+ G LF+S   TR +TNLMVF+RPTIIR+  DA P+T  +L+  R  +  ++G   +++D+ L
Sbjct:  399 DAVAQSTQEAAISSLLGLQGGTIGIGGSGSSGMFGVVLNAVQNDADSNVLSTPFVTTLDNVAATFLVGQEVPFTSGETLGTSNSNPFRTITREEIGIKLEVLPQIIEGGVVRLEIKQEVSSISVDATAIASGLVTNKREIETTVLANDGEIIVLGGLMQDDEQLSQTQVPLLGGLPVIGNLFKSHSNTRRRTNLMVFIRPTIIRNGQDAIPITQQKLDIMRQEEFKKSG--TTRLDDTL 635          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A520XE36_9ACTN (Type II secretion system protein GspD n=2 Tax=Bacteria TaxID=2 RepID=A0A520XE36_9ACTN)

HSP 1 Score: 270 bits (689), Expect = 6.090e-83
Identity = 138/230 (60.00%), Postives = 175/230 (76.09%), Query Frame = 1
Query:   34 AAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723
            AA+ ++ G  GG  G  G  ND LFG ++NA+++DTDSN+LSTPFVTT+DNVPA FLVGQE+P + GE+LG +N NPFRT  R+EVGI+L+VLPQI+EGDV+RLEI Q VSSI+   +A A D V NKREITTTVLA+DGE+IVLGGL++DDE++   KVP+LGDIPI G LF+S   TR +TNLMVF+RPTI+RSA DA P+T  +L+  R  +  + G     ID  L
Sbjct:  407 AALQTLLGAQGGTIGTVGIGNDGLFGAVLNAVQSDTDSNVLSTPFVTTMDNVPAIFLVGQEVPFSSGETLGNNNSNPFRTITREEVGIRLEVLPQITEGDVVRLEIVQEVSSIAPAASAIATDLVTNKREITTTVLADDGEMIVLGGLIEDDEELIDTKVPVLGDIPIVGNLFKSTSDTRTRTNLMVFIRPTILRSAQDAAPVTQQKLDLVRMEEYRRNGEGPLAIDNAL 636          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A2G2MNS3_9PROT (Type II secretion system protein GspD n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MNS3_9PROT)

HSP 1 Score: 260 bits (665), Expect = 1.980e-79
Identity = 132/232 (56.90%), Postives = 176/232 (75.86%), Query Frame = 1
Query:   28 ETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEIL 723
            + AA++S+ GL GG  G   + +D LFG I++A+E DTDSN+LSTPF+TTLDNVPATFLVGQE+P T GE+LG +N NPFRT  R+E+GI+L++LPQI++GDV+RLEI Q VSSIS   +  A D V NKRE +TT+L +DGEIIVLGGL+QDDEQ+  ++VP LGD+P+ G LF+++  +R +TNLMVF+R TI+R   DA PLT  +L+  R  +  + G + S IDE L
Sbjct:  420 QDAAVNSLLGLQGGTVGFASSGSDGLFGAILSAVENDTDSNVLSTPFITTLDNVPATFLVGQEVPFTSGETLGNNNNNPFRTINREEIGIKLEILPQINQGDVVRLEIIQEVSSISPDASLIASDLVTNKREFSTTMLLDDGEIIVLGGLMQDDEQLFRSQVPFLGDLPVVGNLFKTKNTSRKRTNLMVFIRATILRDGDDAAPLTQQKLDLIRREERLKNGENSSLIDEAL 651          
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Match: A0A4S2H4P9_9PROT (Type II secretion system protein GspD n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4S2H4P9_9PROT)

HSP 1 Score: 252 bits (644), Expect = 3.440e-76
Identity = 134/232 (57.76%), Postives = 172/232 (74.14%), Query Frame = 1
Query:   34 AAISSIAGLDGGAFGVGGNSND-TLFGLIVNALETDTDSNILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQLDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLANDGEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFLRPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEILN 726
            AAI+S+ G  GG  GVGG ++D TLFGLI+NALETD+DSN+LS P VT LDN  A+ LVGQEIPIT GE+LG +N NPFR  ERQ+VG+QLDV PQI+EGD IRL I Q VSSI+G ++A   + + N+REITTTVLA+DGEIIVLGGL++ D+Q    +VPLLGDIP+AG+LFR+E  +  + NLMVF+RP IIRSA D R +T        +     T  + S +++I++
Sbjct:  421 AAIASLLGSRGGLLGVGGQTDDGTLFGLILNALETDSDSNVLSKPSVTVLDNEEASILVGQEIPITTGEALGANNTNPFRQIERQDVGVQLDVTPQINEGDTIRLTIRQEVSSIAGPVSANFQELITNQREITTTVLADDGEIIVLGGLIESDQQYRDDQVPLLGDIPVAGRLFRNESNSERRRNLMVFIRPQIIRSAEDMRQVTRQNYGSMTAAQRRATRGNGSSLEDIVD 652          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98949.24009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C035261.170e-13485.19Type II secretion system protein GspD n=2 Tax=Lito... [more]
A0A8J3CS24_9PROT1.190e-10674.34Type II secretion system protein GspD n=1 Tax=Algi... [more]
UPI0004091F026.210e-10573.04hypothetical protein n=1 Tax=Hellea balneolensis T... [more]
A0A420WMB2_9PROT1.120e-10269.29Type II secretion system protein D (GspD) n=1 Tax=... [more]
UPI0003A88D914.320e-10066.53type II secretion system secretin GspD n=1 Tax=Rob... [more]
A0A2G2J4D0_9PROT3.920e-8962.29Type II secretion system protein GspD n=1 Tax=Robi... [more]
A0A2G2GIX6_9PROT7.270e-8559.41Type II secretion system protein GspD n=1 Tax=Robi... [more]
A0A520XE36_9ACTN6.090e-8360.00Type II secretion system protein GspD n=2 Tax=Bact... [more]
A0A2G2MNS3_9PROT1.980e-7956.90Type II secretion system protein GspD n=1 Tax=Robi... [more]
A0A4S2H4P9_9PROT3.440e-7657.76Type II secretion system protein GspD n=1 Tax=Mari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98949contigP-canaliculata_contig98949:314..1054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score326.2
Seed ortholog evalue1.3e-86
Seed eggNOG ortholog1121948.AUAC01000007_gene315
Preferred namegspD
KEGG koko:K02453,ko:K03219
KEGG TC3.A.15,3.A.6.1,3.A.6.3
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331,M00332,M00542
EggNOG free text desc.general secretion pathway protein D
EggNOG OGs1MUUA@1224,2TT8A@28211,43WBK@69657,COG1450@1,COG1450@2
COG Functional cat.NU
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Hectar predicted targeting categoryother localisation
Exons1
Model size741
Cds size741
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.9039817-CDS-P-canaliculata_contig98949:313..10541622817350.9039817-CDS-P-canaliculata_contig98949:313..1054Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98949 314..1054 -
1693495240.5701616-CDS-P-canaliculata_contig98949:313..10541693495240.5701616-CDS-P-canaliculata_contig98949:313..1054Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98949 314..1054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98949.24009.1prot_P-canaliculata_contig98949.24009.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98949 314..1054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98949.24009.1

>prot_P-canaliculata_contig98949.24009.1 ID=prot_P-canaliculata_contig98949.24009.1|Name=mRNA_P-canaliculata_contig98949.24009.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=247bp
LSDATQSSFETAAISSIAGLDGGAFGVGGNSNDTLFGLIVNALETDTDSN
ILSTPFVTTLDNVPATFLVGQEIPITVGESLGTDNVNPFRTFERQEVGIQ
LDVLPQISEGDVIRLEIEQIVSSISGVLTATAGDFVLNKREITTTVLAND
GEIIVLGGLVQDDEQVTVAKVPLLGDIPIAGKLFRSEGKTRNKTNLMVFL
RPTIIRSAADARPLTLDRLNQSRSIDINQTGRDVSKIDEILNPPPR*
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mRNA from alignment at P-canaliculata_contig98949:314..1054-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98949.24009.1 ID=mRNA_P-canaliculata_contig98949.24009.1|Name=mRNA_P-canaliculata_contig98949.24009.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=741bp|location=Sequence derived from alignment at P-canaliculata_contig98949:314..1054- (Pelvetia canaliculata dioecious)
CTCAGCGACGCAACGCAAAGCAGTTTTGAGACAGCGGCCATTAGCTCAAT TGCCGGGCTGGACGGCGGCGCTTTCGGCGTTGGCGGCAATAGCAATGACA CGCTGTTCGGCCTTATCGTCAACGCGCTCGAAACCGATACTGATAGCAAT ATTTTATCGACGCCTTTCGTAACAACGCTGGATAATGTCCCGGCGACATT CCTCGTCGGTCAGGAGATTCCCATCACCGTCGGGGAGAGCTTAGGCACCG ATAATGTCAACCCTTTCCGGACGTTCGAGCGCCAAGAGGTTGGCATTCAG TTGGATGTCCTTCCGCAAATTTCTGAAGGTGATGTTATTAGATTGGAAAT CGAACAAATTGTGTCCTCAATCTCGGGCGTTTTGACGGCGACGGCCGGCG ATTTTGTTTTGAATAAGCGGGAAATTACGACCACCGTTTTGGCCAATGAC GGCGAAATTATCGTCCTTGGCGGGTTGGTTCAGGACGACGAGCAAGTCAC CGTCGCAAAGGTCCCCCTCTTGGGCGATATTCCGATCGCCGGTAAGCTCT TCCGGTCGGAAGGAAAAACGCGCAATAAAACGAACCTCATGGTTTTCTTA CGTCCGACGATTATTCGTTCAGCGGCAGATGCGCGTCCTCTCACATTAGA TCGTTTAAATCAGAGCCGGTCGATTGATATTAATCAAACCGGACGGGATG TCTCTAAGATCGACGAAATTCTGAATCCGCCGCCGCGTTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig98949:314..1054-

>mRNA_P-canaliculata_contig98949.24009.1 ID=mRNA_P-canaliculata_contig98949.24009.1|Name=mRNA_P-canaliculata_contig98949.24009.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at P-canaliculata_contig98949:314..1054- (Pelvetia canaliculata dioecious)
CTCAGCGACGCAACGCAAAGCAGTTTTGAGACAGCGGCCATTAGCTCAAT
TGCCGGGCTGGACGGCGGCGCTTTCGGCGTTGGCGGCAATAGCAATGACA
CGCTGTTCGGCCTTATCGTCAACGCGCTCGAAACCGATACTGATAGCAAT
ATTTTATCGACGCCTTTCGTAACAACGCTGGATAATGTCCCGGCGACATT
CCTCGTCGGTCAGGAGATTCCCATCACCGTCGGGGAGAGCTTAGGCACCG
ATAATGTCAACCCTTTCCGGACGTTCGAGCGCCAAGAGGTTGGCATTCAG
TTGGATGTCCTTCCGCAAATTTCTGAAGGTGATGTTATTAGATTGGAAAT
CGAACAAATTGTGTCCTCAATCTCGGGCGTTTTGACGGCGACGGCCGGCG
ATTTTGTTTTGAATAAGCGGGAAATTACGACCACCGTTTTGGCCAATGAC
GGCGAAATTATCGTCCTTGGCGGGTTGGTTCAGGACGACGAGCAAGTCAC
CGTCGCAAAGGTCCCCCTCTTGGGCGATATTCCGATCGCCGGTAAGCTCT
TCCGGTCGGAAGGAAAAACGCGCAATAAAACGAACCTCATGGTTTTCTTA
CGTCCGACGATTATTCGTTCAGCGGCAGATGCGCGTCCTCTCACATTAGA
TCGTTTAAATCAGAGCCGGTCGATTGATATTAATCAAACCGGACGGGATG
TCTCTAAGATCGACGAAATTCTGAATCCGCCGCCGCGTTAGCTCAGCGAC
GCAACGCAAAGCAGTTTTGAGACAGCGGCCATTAGCTCAATTGCCGGGCT
GGACGGCGGCGCTTTCGGCGTTGGCGGCAATAGCAATGACACGCTGTTCG
GCCTTATCGTCAACGCGCTCGAAACCGATACTGATAGCAATATTTTATCG
ACGCCTTTCGTAACAACGCTGGATAATGTCCCGGCGACATTCCTCGTCGG
TCAGGAGATTCCCATCACCGTCGGGGAGAGCTTAGGCACCGATAATGTCA
ACCCTTTCCGGACGTTCGAGCGCCAAGAGGTTGGCATTCAGTTGGATGTC
CTTCCGCAAATTTCTGAAGGTGATGTTATTAGATTGGAAATCGAACAAAT
TGTGTCCTCAATCTCGGGCGTTTTGACGGCGACGGCCGGCGATTTTGTTT
TGAATAAGCGGGAAATTACGACCACCGTTTTGGCCAATGACGGCGAAATT
ATCGTCCTTGGCGGGTTGGTTCAGGACGACGAGCAAGTCACCGTCGCAAA
GGTCCCCCTCTTGGGCGATATTCCGATCGCCGGTAAGCTCTTCCGGTCGG
AAGGAAAAACGCGCAATAAAACGAACCTCATGGTTTTCTTACGTCCGACG
ATTATTCGTTCAGCGGCAGATGCGCGTCCTCTCACATTAGATCGTTTAAA
TCAGAGCCGGTCGATTGATATTAATCAAACCGGACGGGATGTCTCTAAGA
TCGACGAAATTCTGAATCCGCCGCCGCGTTAG
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